Wall clock time and date at job start Wed Apr 1 2020 03:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.68947 * 2 1 4 4 C 1.53223 * 109.58297 * 239.65476 * 2 1 3 5 5 N 1.47271 * 108.80446 * 240.21020 * 4 2 1 6 6 C 1.47317 * 110.15803 * 299.18552 * 5 4 2 7 7 C 1.53203 * 108.80211 * 60.80859 * 6 5 4 8 8 N 1.47274 * 109.57970 * 120.33575 * 2 1 3 9 9 C 1.47312 * 110.15706 * 58.98148 * 8 2 1 10 10 C 1.47309 * 110.15435 * 60.80929 * 5 4 2 11 11 H 1.08998 * 109.58630 * 59.11720 * 10 5 4 12 12 C 1.50704 * 109.58375 * 179.38829 * 10 5 4 13 13 O 1.21280 * 119.99824 * 355.94743 * 12 10 5 14 14 N 1.34780 * 120.00347 * 175.94158 * 12 10 5 15 15 C 1.46502 * 119.99689 * 184.78107 * 14 12 10 16 16 H 1.08997 * 109.47208 * 328.09973 * 15 14 12 17 17 C 1.53004 * 109.46432 * 208.10373 * 15 14 12 18 18 C 1.50698 * 109.47189 * 65.45641 * 17 15 14 19 19 H 1.07997 * 119.99969 * 5.00880 * 18 17 15 20 20 C 1.37882 * 119.99693 * 185.01268 * 18 17 15 21 21 N 1.31512 * 120.00066 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99911 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46901 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47297 * 119.99671 * 22 20 18 25 25 H 1.48500 * 109.47014 * 240.00068 * 22 20 18 26 26 C 1.50697 * 109.47020 * 88.10725 * 15 14 12 27 27 C 1.38236 * 120.00394 * 39.72045 * 26 15 14 28 28 C 1.38231 * 119.99843 * 179.76561 * 27 26 15 29 29 C 1.38235 * 120.00422 * 0.48777 * 28 27 26 30 30 C 1.38242 * 119.99536 * 359.78748 * 29 28 27 31 31 C 1.38229 * 120.00296 * 359.95882 * 30 29 28 32 32 H 1.08999 * 109.47421 * 299.66403 * 1 2 3 33 33 H 1.08998 * 109.46861 * 59.66125 * 1 2 3 34 34 H 1.08998 * 109.47179 * 179.66122 * 1 2 3 35 35 H 1.08997 * 109.58650 * 0.02562 * 4 2 1 36 36 H 1.09006 * 109.58070 * 120.41798 * 4 2 1 37 37 H 1.08997 * 109.58028 * 180.60420 * 6 5 4 38 38 H 1.08998 * 109.57819 * 301.01113 * 6 5 4 39 39 H 1.09003 * 109.58302 * 240.21204 * 7 6 5 40 40 H 1.09000 * 109.58423 * 119.79703 * 7 6 5 41 41 H 1.08997 * 109.58697 * 180.60100 * 9 8 2 42 42 H 1.08998 * 109.58310 * 301.01456 * 9 8 2 43 43 H 0.96997 * 119.99613 * 4.78461 * 14 12 10 44 44 H 1.09000 * 109.46970 * 185.45670 * 17 15 14 45 45 H 1.09001 * 109.47221 * 305.45012 * 17 15 14 46 46 H 0.96998 * 120.00120 * 179.97438 * 21 20 18 47 47 H 1.07995 * 119.99635 * 359.97438 * 27 26 15 48 48 H 1.07998 * 120.00049 * 180.25345 * 28 27 26 49 49 H 1.07995 * 120.00161 * 179.76449 * 29 28 27 50 50 H 1.07997 * 119.99916 * 179.97438 * 30 29 28 51 51 H 1.07993 * 120.00612 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0263 0.0000 4 6 2.0436 -0.7293 -1.2458 5 7 2.8553 -1.8821 -0.8202 6 6 4.0100 -1.4251 -0.0279 7 6 3.4966 -0.6958 1.2178 8 7 2.0236 -0.7008 1.1976 9 6 1.5223 -2.0859 1.2179 10 6 2.0356 -2.8151 -0.0279 11 1 1.1918 -3.1588 -0.6261 12 6 2.8742 -3.9962 0.3879 13 8 4.0183 -4.0950 -0.0022 14 7 2.3528 -4.9428 1.1934 15 6 3.1978 -6.0350 1.6824 16 1 3.9552 -6.2711 0.9349 17 6 2.3341 -7.2712 1.9413 18 6 1.7684 -7.7709 0.6370 19 1 2.0654 -7.3086 -0.2928 20 6 0.8717 -8.8182 0.6307 21 7 0.5105 -9.3814 1.7629 22 14 0.1699 -9.4373 -0.9860 23 1 0.7313 -8.6407 -2.1065 24 1 0.5285 -10.8671 -1.1662 25 1 -1.3082 -9.2957 -0.9705 26 6 3.8704 -5.6148 2.9638 27 6 3.1709 -4.8802 3.9029 28 6 3.7864 -4.4989 5.0804 29 6 5.1045 -4.8435 5.3145 30 6 5.8058 -5.5733 4.3728 31 6 5.1887 -5.9591 3.1976 32 1 -0.3634 0.5086 0.8930 33 1 -0.3633 0.5191 -0.8869 34 1 -0.3633 -1.0276 -0.0061 35 1 1.1986 -1.0767 -1.8402 36 1 2.6559 -0.0508 -1.8399 37 1 4.6097 -2.2842 0.2729 38 1 4.6168 -0.7448 -0.6255 39 1 3.8584 0.3324 1.2143 40 1 3.8514 -1.2070 2.1127 41 1 1.8841 -2.5923 2.1127 42 1 0.4323 -2.0800 1.2145 43 1 1.4181 -4.9007 1.4492 44 1 2.9441 -8.0519 2.3957 45 1 1.5180 -7.0096 2.6149 46 1 -0.1207 -10.1180 1.7586 47 1 2.1425 -4.6071 3.7181 48 1 3.2387 -3.9285 5.8160 49 1 5.5865 -4.5423 6.2328 50 1 6.8357 -5.8422 4.5554 51 1 5.7366 -6.5288 2.4618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548674282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:52 Heat of formation + Delta-G solvation = -0.239105 kcal Electronic energy + Delta-G solvation = -31818.891235 eV Core-core repulsion = 27910.490138 eV Total energy + Delta-G solvation = -3908.401097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.62528 -40.71490 -39.48869 -36.82037 -34.80857 -34.45779 -33.48566 -33.24614 -31.81595 -31.56506 -30.49256 -28.15436 -26.82936 -25.18231 -24.85765 -23.80462 -23.41109 -23.17876 -21.77458 -21.16162 -19.24214 -18.82666 -18.49081 -17.95850 -17.55096 -17.21165 -16.77737 -16.63341 -16.23844 -16.16954 -15.64930 -15.27935 -14.80066 -14.62132 -14.41222 -14.31725 -14.20550 -14.11344 -14.03916 -13.87324 -13.68936 -13.49360 -13.39318 -13.06035 -12.91118 -12.87284 -12.66034 -12.51429 -12.34458 -12.21529 -12.13620 -11.88565 -11.64614 -11.56795 -11.44114 -11.29497 -10.84702 -10.67006 -10.48929 -9.94149 -9.75913 -9.53184 -8.72013 -8.21293 -6.30956 0.50213 0.55431 1.36609 1.39828 1.51215 1.68411 2.14011 2.38998 2.67901 2.96046 3.10523 3.13220 3.62047 3.63174 3.69363 3.85276 3.98394 4.02268 4.05595 4.18038 4.20521 4.30774 4.31570 4.39816 4.45002 4.46925 4.49208 4.64693 4.65900 4.74798 4.76555 4.79284 4.81432 4.89837 4.93158 4.96370 5.11106 5.12386 5.19599 5.28100 5.32050 5.42707 5.54408 5.61034 5.61571 5.64222 5.70186 5.77180 5.90935 6.01877 6.15511 6.15864 6.20102 6.69792 6.81465 7.34971 7.38225 8.89439 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008272 B = 0.004648 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.247568 B = 6022.367833 C = 8312.975094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.037 3.963 3 H 0.099 0.901 4 C 0.016 3.984 5 N -0.514 5.514 6 C 0.002 3.998 7 C 0.018 3.982 8 N -0.508 5.508 9 C 0.024 3.976 10 C 0.031 3.969 11 H 0.118 0.882 12 C 0.519 3.481 13 O -0.569 6.569 14 N -0.693 5.693 15 C 0.202 3.798 16 H 0.056 0.944 17 C 0.038 3.962 18 C -0.527 4.527 19 H 0.048 0.952 20 C 0.014 3.986 21 N -0.924 5.924 22 Si 0.954 3.046 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.273 1.273 26 C -0.097 4.097 27 C -0.118 4.118 28 C -0.122 4.122 29 C -0.128 4.128 30 C -0.123 4.123 31 C -0.134 4.134 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.406 0.594 44 H 0.000 1.000 45 H 0.016 0.984 46 H 0.264 0.736 47 H 0.120 0.880 48 H 0.145 0.855 49 H 0.150 0.850 50 H 0.142 0.858 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.703 20.525 2.443 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 H 0.117 0.883 4 C -0.113 4.113 5 N -0.235 5.235 6 C -0.127 4.127 7 C -0.112 4.112 8 N -0.229 5.229 9 C -0.107 4.107 10 C -0.082 4.082 11 H 0.136 0.864 12 C 0.305 3.695 13 O -0.448 6.448 14 N -0.342 5.342 15 C 0.097 3.903 16 H 0.074 0.926 17 C 0.000 4.000 18 C -0.565 4.565 19 H 0.066 0.934 20 C -0.185 4.185 21 N -0.564 5.564 22 Si 0.779 3.221 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.098 4.098 27 C -0.136 4.136 28 C -0.140 4.140 29 C -0.146 4.146 30 C -0.140 4.140 31 C -0.153 4.153 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.130 0.870 43 H 0.242 0.758 44 H 0.018 0.982 45 H 0.035 0.965 46 H 0.073 0.927 47 H 0.138 0.862 48 H 0.163 0.837 49 H 0.168 0.832 50 H 0.160 0.840 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.404 20.326 2.232 20.589 hybrid contribution -0.586 -1.212 -0.847 1.590 sum 1.818 19.114 1.385 19.250 Atomic orbital electron populations 1.21882 0.92343 1.02322 1.03097 1.22565 0.97496 0.98698 0.88504 0.88272 1.23151 0.98403 0.91968 0.97747 1.63556 1.07952 1.14480 1.37536 1.23082 0.93942 1.00829 0.94866 1.22845 0.88263 1.02103 0.97950 1.63988 1.07892 1.13009 1.38047 1.22951 1.02539 0.89137 0.96077 1.22332 0.96352 0.92032 0.97520 0.86427 1.20736 0.87497 0.83861 0.77374 1.90572 1.20569 1.77730 1.55941 1.45769 1.14081 1.25023 1.49358 1.19675 0.92374 0.86963 0.91331 0.92599 1.19136 0.93765 0.90813 0.96245 1.21372 1.25338 1.16513 0.93240 0.93383 1.25722 0.96834 0.96634 0.99304 1.70064 1.34256 1.24777 1.27291 0.85570 0.78413 0.78033 0.80043 1.19717 1.20759 1.19835 1.20418 0.94681 0.98098 0.96606 1.21030 0.99902 0.98497 0.94166 1.21422 0.95663 1.00104 0.96822 1.21458 0.94670 0.98505 0.99946 1.21365 1.00852 0.98468 0.93365 1.21159 0.94509 1.00895 0.98697 0.91704 0.90271 0.92704 0.89232 0.88992 0.90469 0.89647 0.88479 0.91607 0.90471 0.87016 0.75797 0.98160 0.96539 0.92689 0.86156 0.83688 0.83204 0.84002 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.63 71.98 0.62 -1.24 16 2 C 0.04 0.61 3.05 44.92 0.14 0.75 16 3 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 4 C 0.02 0.31 5.80 86.31 0.50 0.81 16 5 N -0.51 -13.83 5.03 -870.93 -4.38 -18.21 16 6 C 0.00 0.06 5.69 86.29 0.49 0.55 16 7 C 0.02 0.41 6.13 86.29 0.53 0.94 16 8 N -0.51 -10.52 5.24 -866.53 -4.54 -15.06 16 9 C 0.02 0.53 5.21 86.29 0.45 0.98 16 10 C 0.03 0.86 2.87 44.16 0.13 0.99 16 11 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 12 C 0.52 18.67 6.57 87.66 0.58 19.25 16 13 O -0.57 -24.79 13.51 -3.03 -0.04 -24.83 16 14 N -0.69 -25.26 3.61 -446.08 -1.61 -26.87 16 15 C 0.20 8.56 2.20 44.25 0.10 8.65 16 16 H 0.06 2.70 7.28 -2.39 -0.02 2.69 16 17 C 0.04 1.90 4.51 29.85 0.13 2.03 16 18 C -0.53 -28.76 8.85 25.60 0.23 -28.54 16 19 H 0.05 2.67 7.75 -2.91 -0.02 2.65 16 20 C 0.01 0.77 5.46 84.66 0.46 1.23 16 21 N -0.92 -53.59 13.29 21.45 0.28 -53.30 16 22 Si 0.95 43.65 29.54 68.60 2.03 45.67 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C -0.10 -3.62 4.94 -19.86 -0.10 -3.72 16 27 C -0.12 -3.78 9.33 22.27 0.21 -3.57 16 28 C -0.12 -3.24 10.05 22.27 0.22 -3.01 16 29 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 30 C -0.12 -3.45 10.05 22.27 0.22 -3.22 16 31 C -0.13 -4.71 9.67 22.27 0.22 -4.50 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.80 6.32 -2.39 -0.02 0.78 16 35 H 0.09 1.58 7.61 -2.39 -0.02 1.57 16 36 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.08 2.67 5.34 -2.39 -0.01 2.66 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 1.93 7.38 -2.39 -0.02 1.91 16 42 H 0.11 2.10 6.18 -2.39 -0.01 2.08 16 43 H 0.41 13.48 8.51 -92.71 -0.79 12.69 16 44 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 47 H 0.12 3.63 7.71 -2.91 -0.02 3.61 16 48 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 49 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 50 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 51 H 0.11 3.92 8.04 -2.91 -0.02 3.90 16 Total: -1.00 -68.67 396.59 -2.79 -71.46 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: 0.13 Total: 35.73 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 5.35 Total: -14.58 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -10.25 Total: -113.45 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.04 Total: -24.83 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.67 -2.79 -71.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548674282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.219 kcal (2) G-P(sol) polarization free energy of solvation -68.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds