Wall clock time and date at job start Wed Apr 1 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.69087 * 2 1 4 4 C 1.53199 * 109.58101 * 239.65936 * 2 1 3 5 5 N 1.47312 * 108.80255 * 240.21379 * 4 2 1 6 6 C 1.47312 * 110.08153 * 60.85779 * 5 4 2 7 7 C 1.53211 * 108.79914 * 299.13584 * 6 5 4 8 8 N 1.47312 * 109.58010 * 120.34318 * 2 1 3 9 9 C 1.47275 * 110.15635 * 180.59997 * 8 2 1 10 10 C 1.47271 * 110.16031 * 299.18315 * 5 4 2 11 11 H 1.08994 * 109.58051 * 180.73669 * 10 5 4 12 12 C 1.50697 * 109.58175 * 301.00942 * 10 5 4 13 13 O 1.21277 * 120.00307 * 356.11338 * 12 10 5 14 14 N 1.34777 * 119.99764 * 176.11596 * 12 10 5 15 15 C 1.46505 * 120.00001 * 174.90275 * 14 12 10 16 16 H 1.09006 * 109.47166 * 327.66530 * 15 14 12 17 17 C 1.53001 * 109.46705 * 87.66064 * 15 14 12 18 18 C 1.50701 * 109.47318 * 185.33596 * 17 15 14 19 19 H 1.08003 * 119.99771 * 355.27910 * 18 17 15 20 20 C 1.37876 * 120.00350 * 175.28249 * 18 17 15 21 21 N 1.31516 * 119.99758 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99717 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46974 * 270.00073 * 22 20 18 24 24 H 1.48497 * 109.47486 * 30.00010 * 22 20 18 25 25 H 1.48495 * 109.46928 * 150.00588 * 22 20 18 26 26 C 1.50695 * 109.47251 * 207.66227 * 15 14 12 27 27 C 1.38235 * 120.00238 * 319.72640 * 26 15 14 28 28 C 1.38232 * 120.00137 * 179.81249 * 27 26 15 29 29 C 1.38232 * 119.99720 * 0.41882 * 28 27 26 30 30 C 1.38238 * 120.00331 * 359.81409 * 29 28 27 31 31 C 1.38227 * 119.99645 * 359.97438 * 30 29 28 32 32 H 1.08993 * 109.47319 * 180.34208 * 1 2 3 33 33 H 1.09002 * 109.46998 * 300.34389 * 1 2 3 34 34 H 1.09006 * 109.47191 * 60.33804 * 1 2 3 35 35 H 1.09003 * 109.58364 * 120.41490 * 4 2 1 36 36 H 1.09005 * 109.58549 * 0.02562 * 4 2 1 37 37 H 1.08998 * 109.58558 * 58.92364 * 6 5 4 38 38 H 1.08997 * 109.58581 * 179.34456 * 6 5 4 39 39 H 1.09000 * 109.58591 * 240.21530 * 7 6 5 40 40 H 1.09000 * 109.58392 * 119.80213 * 7 6 5 41 41 H 1.08995 * 109.58295 * 179.38528 * 9 8 2 42 42 H 1.09004 * 109.58148 * 58.97348 * 9 8 2 43 43 H 0.96996 * 120.00296 * 354.90967 * 14 12 10 44 44 H 1.08999 * 109.47018 * 65.33562 * 17 15 14 45 45 H 1.09005 * 109.47491 * 305.33921 * 17 15 14 46 46 H 0.97006 * 119.99283 * 179.97438 * 21 20 18 47 47 H 1.07999 * 119.99734 * 359.97438 * 27 26 15 48 48 H 1.07999 * 119.99850 * 180.21179 * 28 27 26 49 49 H 1.08008 * 119.99570 * 179.78906 * 29 28 27 50 50 H 1.08003 * 119.99805 * 179.97438 * 30 29 28 51 51 H 1.08004 * 119.99744 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0435 -0.7291 -1.2457 5 7 2.8553 -1.8823 -0.8200 6 6 2.0338 -2.8148 -0.0290 7 6 1.5205 -2.0856 1.2169 8 7 2.0237 -0.7012 1.1978 9 6 3.4963 -0.6962 1.2179 10 6 4.0098 -1.4256 -0.0279 11 1 4.6105 -2.2846 0.2708 12 6 4.8488 -0.4851 -0.8540 13 8 4.5603 -0.2740 -2.0129 14 7 5.9198 0.1214 -0.3050 15 6 6.7998 0.9472 -1.1356 16 1 6.8301 0.5421 -2.1471 17 6 6.2657 2.3803 -1.1761 18 6 7.0938 3.1983 -2.1333 19 1 7.9642 2.7634 -2.6020 20 6 6.7403 4.5018 -2.4107 21 7 7.4628 5.2154 -3.2464 22 14 5.2344 5.2537 -1.6005 23 1 4.0416 5.0109 -2.4511 24 1 5.0269 4.6321 -0.2679 25 1 5.4376 6.7157 -1.4386 26 6 8.1891 0.9451 -0.5518 27 6 8.3636 1.0178 0.8175 28 6 9.6379 1.0120 1.3532 29 6 10.7379 0.9423 0.5191 30 6 10.5636 0.8746 -0.8506 31 6 9.2893 0.8759 -1.3860 32 1 -0.3633 -1.0276 0.0061 33 1 -0.3633 0.5192 0.8869 34 1 -0.3634 0.5086 -0.8930 35 1 2.6558 -0.0506 -1.8398 36 1 1.1983 -1.0765 -1.8401 37 1 1.1885 -3.1549 -0.6273 38 1 2.6389 -3.6700 0.2717 39 1 1.8810 -2.5930 2.1117 40 1 0.4305 -2.0781 1.2128 41 1 3.8512 -1.2073 2.1128 42 1 3.8582 0.3320 1.2143 43 1 6.1081 0.0111 0.6401 44 1 6.3240 2.8181 -0.1795 45 1 5.2278 2.3721 -1.5090 46 1 7.2138 6.1324 -3.4418 47 1 7.5042 1.0764 1.4690 48 1 9.7740 1.0653 2.4233 49 1 11.7337 0.9412 0.9375 50 1 11.4232 0.8206 -1.5023 51 1 9.1531 0.8234 -2.4561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548674283.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:57 Heat of formation + Delta-G solvation = 27.995342 kcal Electronic energy + Delta-G solvation = -31548.145499 eV Core-core repulsion = 27640.968740 eV Total energy + Delta-G solvation = -3907.176759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.68235 -39.49017 -38.33624 -35.27951 -33.73183 -33.08648 -32.44209 -31.74136 -30.80682 -30.42052 -29.10035 -27.49542 -25.17587 -24.03794 -23.83738 -22.56481 -22.27312 -21.86877 -20.48553 -19.60620 -18.34640 -17.73601 -17.21132 -16.95328 -16.34268 -16.13275 -15.49865 -15.17549 -14.74437 -14.62503 -14.21406 -14.07226 -13.85763 -13.51520 -13.35413 -13.25020 -13.03489 -12.98615 -12.83429 -12.78610 -12.54395 -12.36813 -12.27010 -12.24989 -11.70237 -11.54564 -11.31442 -11.19253 -10.86907 -10.79370 -10.72234 -10.65898 -10.46895 -10.10944 -9.97096 -9.88035 -9.41336 -9.14710 -8.64878 -8.54079 -8.46960 -8.15434 -7.82802 -6.03751 -4.01273 1.77965 1.83545 2.88441 3.21266 3.31452 3.38351 3.40641 3.57188 3.99571 4.23983 4.45090 4.45627 4.55356 4.58117 4.67433 4.93188 5.04751 5.10868 5.17769 5.19735 5.23825 5.26334 5.32125 5.34326 5.36118 5.43637 5.49422 5.51294 5.56403 5.63538 5.67457 5.85102 5.87443 5.96594 5.98146 6.07799 6.11496 6.29525 6.40851 6.45716 6.50312 6.55397 6.70204 6.82490 6.89808 6.91846 6.97530 7.00983 7.23054 7.27457 7.43251 7.74374 7.85537 8.49808 8.56049 9.00221 9.58343 11.09249 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010006 B = 0.004159 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.521465 B = 6730.556506 C = 8556.397498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.032 3.968 3 H 0.088 0.912 4 C 0.001 3.999 5 N -0.491 5.491 6 C 0.012 3.988 7 C 0.005 3.995 8 N -0.508 5.508 9 C 0.017 3.983 10 C 0.023 3.977 11 H 0.111 0.889 12 C 0.518 3.482 13 O -0.514 6.514 14 N -0.724 5.724 15 C 0.193 3.807 16 H 0.094 0.906 17 C -0.010 4.010 18 C -0.513 4.513 19 H 0.078 0.922 20 C 0.072 3.928 21 N -0.900 5.900 22 Si 0.875 3.125 23 H -0.277 1.277 24 H -0.268 1.268 25 H -0.288 1.288 26 C -0.053 4.053 27 C -0.121 4.121 28 C -0.123 4.123 29 C -0.132 4.132 30 C -0.118 4.118 31 C -0.091 4.091 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.015 0.985 45 H 0.022 0.978 46 H 0.263 0.737 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 -15.759 12.107 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 H 0.107 0.893 4 C -0.128 4.128 5 N -0.212 5.212 6 C -0.118 4.118 7 C -0.125 4.125 8 N -0.230 5.230 9 C -0.114 4.114 10 C -0.091 4.091 11 H 0.129 0.871 12 C 0.302 3.698 13 O -0.389 6.389 14 N -0.376 5.376 15 C 0.090 3.910 16 H 0.112 0.888 17 C -0.048 4.048 18 C -0.552 4.552 19 H 0.096 0.904 20 C -0.130 4.130 21 N -0.539 5.539 22 Si 0.703 3.297 23 H -0.203 1.203 24 H -0.193 1.193 25 H -0.214 1.214 26 C -0.053 4.053 27 C -0.140 4.140 28 C -0.141 4.141 29 C -0.150 4.150 30 C -0.136 4.136 31 C -0.109 4.109 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.133 0.867 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.226 0.774 44 H 0.034 0.966 45 H 0.040 0.960 46 H 0.072 0.928 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.132 0.868 50 H 0.135 0.865 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.108 -15.438 11.147 20.326 hybrid contribution -0.597 0.634 0.887 1.243 sum -7.705 -14.805 12.034 20.576 Atomic orbital electron populations 1.21874 0.93674 1.01828 1.02309 1.22529 0.96477 0.99074 0.89712 0.89339 1.23369 0.98607 0.93640 0.97183 1.63629 1.06977 1.14839 1.35774 1.22934 0.98224 0.95995 0.94669 1.22983 1.01520 0.89339 0.98645 1.63924 1.07218 1.13940 1.37878 1.22976 0.88865 1.02409 0.97144 1.22434 0.94093 0.98886 0.93725 0.87120 1.20087 0.81137 0.80658 0.87907 1.90666 1.68440 1.62435 1.17323 1.46276 1.27711 1.50737 1.12831 1.20059 0.84426 0.92917 0.93625 0.88832 1.19874 0.96956 0.90339 0.97653 1.20965 1.12363 0.96665 1.25170 0.90362 1.24922 0.96341 0.97057 0.94647 1.69898 1.39288 1.09556 1.35125 0.86853 0.84029 0.78290 0.80540 1.20271 1.19319 1.21436 1.19843 0.94965 0.97181 0.93326 1.20784 0.96874 1.01693 0.94600 1.20953 0.92683 1.01300 0.99159 1.21002 0.98258 1.01947 0.93810 1.21068 0.97007 1.00461 0.95101 1.21008 0.91826 0.98165 0.99950 0.92568 0.91979 0.91785 0.86696 0.90199 0.89897 0.90193 0.90223 0.89670 0.89231 0.89304 0.77392 0.96637 0.95985 0.92761 0.86938 0.86730 0.86807 0.86463 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.65 37.16 0.32 -1.05 16 2 C 0.03 0.39 3.05 -67.38 -0.21 0.19 16 3 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 4 C 0.00 0.02 5.35 -3.50 -0.02 0.00 16 5 N -0.49 -6.36 5.03 -226.64 -1.14 -7.50 16 6 C 0.01 0.11 6.14 -3.49 -0.02 0.09 16 7 C 0.01 0.04 5.75 -3.49 -0.02 0.02 16 8 N -0.51 -5.66 5.24 -225.24 -1.18 -6.84 16 9 C 0.02 0.18 5.49 -3.50 -0.02 0.16 16 10 C 0.02 0.28 2.88 -68.54 -0.20 0.08 16 11 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 12 C 0.52 8.42 6.57 -10.99 -0.07 8.35 16 13 O -0.51 -10.58 13.59 5.56 0.08 -10.51 16 14 N -0.72 -11.26 4.70 -54.93 -0.26 -11.52 16 15 C 0.19 3.75 2.21 -69.08 -0.15 3.60 16 16 H 0.09 2.03 7.43 -51.93 -0.39 1.64 16 17 C -0.01 -0.24 3.81 -27.88 -0.11 -0.34 16 18 C -0.51 -14.29 9.19 -34.44 -0.32 -14.61 16 19 H 0.08 2.29 6.65 -52.48 -0.35 1.94 16 20 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 21 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 22 Si 0.88 22.10 27.38 -169.99 -4.65 17.45 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.52 6.68 56.52 0.38 -6.14 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C -0.05 -0.94 4.49 -104.63 -0.47 -1.41 16 27 C -0.12 -1.88 9.07 -39.58 -0.36 -2.24 16 28 C -0.12 -1.73 10.05 -39.59 -0.40 -2.13 16 29 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 30 C -0.12 -1.84 10.05 -39.59 -0.40 -2.24 16 31 C -0.09 -1.63 8.61 -39.59 -0.34 -1.97 16 32 H 0.06 0.49 6.27 -51.93 -0.33 0.17 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.12 1.99 5.35 -51.93 -0.28 1.71 16 36 H 0.08 1.00 7.61 -51.93 -0.40 0.61 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.70 6.15 -51.93 -0.32 0.38 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.09 7.31 -51.93 -0.38 0.71 16 43 H 0.39 4.87 6.53 -40.82 -0.27 4.60 16 44 H 0.02 0.36 7.52 -51.93 -0.39 -0.03 16 45 H 0.02 0.55 7.31 -51.93 -0.38 0.17 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.11 1.50 6.90 -52.49 -0.36 1.14 16 48 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 49 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 50 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 51 H 0.12 2.26 7.83 -52.48 -0.41 1.84 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -33.29 388.15 -11.85 -45.15 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -8.05 Total: 8.57 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -3.27 Total: -13.78 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -1.81 Total: -52.74 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.65 Total: 17.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.29 -11.85 -45.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548674283.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.144 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds