Wall clock time and date at job start Wed Apr 1 2020 03:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.69087 * 2 1 4 4 C 1.53199 * 109.58101 * 239.65936 * 2 1 3 5 5 N 1.47312 * 108.80255 * 240.21379 * 4 2 1 6 6 C 1.47312 * 110.08153 * 60.85779 * 5 4 2 7 7 C 1.53211 * 108.79914 * 299.13584 * 6 5 4 8 8 N 1.47312 * 109.58010 * 120.34318 * 2 1 3 9 9 C 1.47275 * 110.15635 * 180.59997 * 8 2 1 10 10 C 1.47271 * 110.16031 * 299.18315 * 5 4 2 11 11 H 1.08994 * 109.58051 * 180.73669 * 10 5 4 12 12 C 1.50697 * 109.58175 * 301.00942 * 10 5 4 13 13 O 1.21277 * 120.00307 * 356.11338 * 12 10 5 14 14 N 1.34777 * 119.99764 * 176.11596 * 12 10 5 15 15 C 1.46505 * 120.00001 * 174.90275 * 14 12 10 16 16 H 1.09006 * 109.47166 * 327.66530 * 15 14 12 17 17 C 1.53001 * 109.46705 * 87.66064 * 15 14 12 18 18 C 1.50701 * 109.47318 * 185.33596 * 17 15 14 19 19 H 1.08003 * 119.99771 * 355.27910 * 18 17 15 20 20 C 1.37876 * 120.00350 * 175.28249 * 18 17 15 21 21 N 1.31516 * 119.99758 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99717 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46974 * 270.00073 * 22 20 18 24 24 H 1.48497 * 109.47486 * 30.00010 * 22 20 18 25 25 H 1.48495 * 109.46928 * 150.00588 * 22 20 18 26 26 C 1.50695 * 109.47251 * 207.66227 * 15 14 12 27 27 C 1.38235 * 120.00238 * 319.72640 * 26 15 14 28 28 C 1.38232 * 120.00137 * 179.81249 * 27 26 15 29 29 C 1.38232 * 119.99720 * 0.41882 * 28 27 26 30 30 C 1.38238 * 120.00331 * 359.81409 * 29 28 27 31 31 C 1.38227 * 119.99645 * 359.97438 * 30 29 28 32 32 H 1.08993 * 109.47319 * 180.34208 * 1 2 3 33 33 H 1.09002 * 109.46998 * 300.34389 * 1 2 3 34 34 H 1.09006 * 109.47191 * 60.33804 * 1 2 3 35 35 H 1.09003 * 109.58364 * 120.41490 * 4 2 1 36 36 H 1.09005 * 109.58549 * 0.02562 * 4 2 1 37 37 H 1.08998 * 109.58558 * 58.92364 * 6 5 4 38 38 H 1.08997 * 109.58581 * 179.34456 * 6 5 4 39 39 H 1.09000 * 109.58591 * 240.21530 * 7 6 5 40 40 H 1.09000 * 109.58392 * 119.80213 * 7 6 5 41 41 H 1.08995 * 109.58295 * 179.38528 * 9 8 2 42 42 H 1.09004 * 109.58148 * 58.97348 * 9 8 2 43 43 H 0.96996 * 120.00296 * 354.90967 * 14 12 10 44 44 H 1.08999 * 109.47018 * 65.33562 * 17 15 14 45 45 H 1.09005 * 109.47491 * 305.33921 * 17 15 14 46 46 H 0.97006 * 119.99283 * 179.97438 * 21 20 18 47 47 H 1.07999 * 119.99734 * 359.97438 * 27 26 15 48 48 H 1.07999 * 119.99850 * 180.21179 * 28 27 26 49 49 H 1.08008 * 119.99570 * 179.78906 * 29 28 27 50 50 H 1.08003 * 119.99805 * 179.97438 * 30 29 28 51 51 H 1.08004 * 119.99744 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0435 -0.7291 -1.2457 5 7 2.8553 -1.8823 -0.8200 6 6 2.0338 -2.8148 -0.0290 7 6 1.5205 -2.0856 1.2169 8 7 2.0237 -0.7012 1.1978 9 6 3.4963 -0.6962 1.2179 10 6 4.0098 -1.4256 -0.0279 11 1 4.6105 -2.2846 0.2708 12 6 4.8488 -0.4851 -0.8540 13 8 4.5603 -0.2740 -2.0129 14 7 5.9198 0.1214 -0.3050 15 6 6.7998 0.9472 -1.1356 16 1 6.8301 0.5421 -2.1471 17 6 6.2657 2.3803 -1.1761 18 6 7.0938 3.1983 -2.1333 19 1 7.9642 2.7634 -2.6020 20 6 6.7403 4.5018 -2.4107 21 7 7.4628 5.2154 -3.2464 22 14 5.2344 5.2537 -1.6005 23 1 4.0416 5.0109 -2.4511 24 1 5.0269 4.6321 -0.2679 25 1 5.4376 6.7157 -1.4386 26 6 8.1891 0.9451 -0.5518 27 6 8.3636 1.0178 0.8175 28 6 9.6379 1.0120 1.3532 29 6 10.7379 0.9423 0.5191 30 6 10.5636 0.8746 -0.8506 31 6 9.2893 0.8759 -1.3860 32 1 -0.3633 -1.0276 0.0061 33 1 -0.3633 0.5192 0.8869 34 1 -0.3634 0.5086 -0.8930 35 1 2.6558 -0.0506 -1.8398 36 1 1.1983 -1.0765 -1.8401 37 1 1.1885 -3.1549 -0.6273 38 1 2.6389 -3.6700 0.2717 39 1 1.8810 -2.5930 2.1117 40 1 0.4305 -2.0781 1.2128 41 1 3.8512 -1.2073 2.1128 42 1 3.8582 0.3320 1.2143 43 1 6.1081 0.0111 0.6401 44 1 6.3240 2.8181 -0.1795 45 1 5.2278 2.3721 -1.5090 46 1 7.2138 6.1324 -3.4418 47 1 7.5042 1.0764 1.4690 48 1 9.7740 1.0653 2.4233 49 1 11.7337 0.9412 0.9375 50 1 11.4232 0.8206 -1.5023 51 1 9.1531 0.8234 -2.4561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548674283.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:56 Heat of formation + Delta-G solvation = 3.002110 kcal Electronic energy + Delta-G solvation = -31549.229287 eV Core-core repulsion = 27640.968740 eV Total energy + Delta-G solvation = -3908.260547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.65543 -40.79585 -39.59803 -36.77626 -34.94747 -34.65110 -33.70260 -32.86253 -31.94303 -31.61682 -30.81009 -28.46966 -26.74171 -24.94668 -24.88662 -23.73923 -23.59210 -23.23037 -21.74259 -21.09566 -19.41248 -19.03260 -18.73501 -18.05961 -17.58936 -17.09514 -16.81789 -16.49764 -16.35186 -15.89030 -15.73711 -15.36828 -15.07240 -14.74633 -14.52298 -14.43235 -14.23756 -14.14367 -14.08739 -14.00134 -13.82244 -13.43683 -13.30113 -13.27504 -13.12212 -13.05320 -12.62296 -12.54091 -12.30620 -12.06184 -11.94728 -11.89806 -11.67054 -11.63204 -11.46086 -11.42131 -10.86420 -10.79777 -10.61359 -10.07583 -9.71310 -9.48945 -8.73629 -8.30539 -6.32030 0.53121 0.60060 1.27190 1.28828 1.38735 1.60694 2.03484 2.30682 2.64471 2.97227 3.05820 3.09213 3.55285 3.62679 3.67690 3.81616 3.82500 3.94775 4.03568 4.20271 4.23328 4.28225 4.33932 4.34762 4.43184 4.44489 4.51970 4.64225 4.64591 4.71118 4.74437 4.77128 4.79839 4.86991 4.89220 4.94063 5.00367 5.07790 5.19207 5.20036 5.21668 5.30317 5.39995 5.50486 5.61293 5.63983 5.68947 5.70016 5.86245 6.00684 6.13204 6.20848 6.26771 6.59486 6.73729 7.28290 7.31676 8.85623 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010006 B = 0.004159 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.521465 B = 6730.556506 C = 8556.397498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.035 3.965 3 H 0.059 0.941 4 C 0.006 3.994 5 N -0.514 5.514 6 C 0.014 3.986 7 C 0.008 3.992 8 N -0.511 5.511 9 C 0.020 3.980 10 C 0.033 3.967 11 H 0.138 0.862 12 C 0.511 3.489 13 O -0.565 6.565 14 N -0.709 5.709 15 C 0.208 3.792 16 H 0.055 0.945 17 C 0.001 3.999 18 C -0.514 4.514 19 H 0.048 0.952 20 C 0.013 3.987 21 N -0.945 5.945 22 Si 0.936 3.064 23 H -0.279 1.279 24 H -0.250 1.250 25 H -0.279 1.279 26 C -0.076 4.076 27 C -0.124 4.124 28 C -0.117 4.117 29 C -0.127 4.127 30 C -0.127 4.127 31 C -0.123 4.123 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.071 0.929 43 H 0.411 0.589 44 H 0.024 0.976 45 H 0.002 0.998 46 H 0.265 0.735 47 H 0.136 0.864 48 H 0.155 0.845 49 H 0.149 0.851 50 H 0.133 0.867 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.673 -17.568 16.657 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 H 0.077 0.923 4 C -0.123 4.123 5 N -0.236 5.236 6 C -0.115 4.115 7 C -0.121 4.121 8 N -0.233 5.233 9 C -0.110 4.110 10 C -0.080 4.080 11 H 0.156 0.844 12 C 0.298 3.702 13 O -0.443 6.443 14 N -0.362 5.362 15 C 0.103 3.897 16 H 0.074 0.926 17 C -0.037 4.037 18 C -0.553 4.553 19 H 0.066 0.934 20 C -0.184 4.184 21 N -0.586 5.586 22 Si 0.761 3.239 23 H -0.205 1.205 24 H -0.174 1.174 25 H -0.204 1.204 26 C -0.076 4.076 27 C -0.142 4.142 28 C -0.134 4.134 29 C -0.145 4.145 30 C -0.145 4.145 31 C -0.141 4.141 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.144 0.856 42 H 0.089 0.911 43 H 0.249 0.751 44 H 0.042 0.958 45 H 0.020 0.980 46 H 0.074 0.926 47 H 0.154 0.846 48 H 0.172 0.828 49 H 0.167 0.833 50 H 0.151 0.849 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.867 -17.281 15.753 24.671 hybrid contribution -0.258 1.126 -0.600 1.301 sum -8.125 -16.155 15.153 23.592 Atomic orbital electron populations 1.21813 0.91712 1.02922 1.02460 1.22405 0.97977 0.97479 0.89665 0.92282 1.23143 0.98020 0.93567 0.97598 1.63575 1.07667 1.14923 1.37409 1.23046 0.98264 0.95586 0.94635 1.23090 1.02182 0.87735 0.99073 1.63950 1.07210 1.15439 1.36671 1.23033 0.88901 1.01643 0.97461 1.22441 0.93655 0.98685 0.93251 0.84424 1.20997 0.80941 0.80591 0.87702 1.90660 1.69613 1.64147 1.19912 1.46022 1.26977 1.49836 1.13382 1.19449 0.86390 0.90756 0.93072 0.92628 1.19697 0.95024 0.92578 0.96436 1.21272 1.11732 0.97040 1.25241 0.93364 1.25777 0.99425 0.97767 0.95465 1.70037 1.41387 1.10084 1.37094 0.85871 0.79951 0.77811 0.80276 1.20507 1.17360 1.20448 1.19747 0.93461 0.99605 0.94805 1.21077 0.98827 1.00968 0.93375 1.21429 0.91652 0.99153 1.01188 1.21459 1.00245 0.99927 0.92885 1.21327 0.96304 1.00230 0.96664 1.21030 0.93570 1.00488 0.99042 0.90937 0.91585 0.91899 0.91258 0.89604 0.89299 0.88371 0.87952 0.88657 0.85628 0.91078 0.75136 0.95815 0.97976 0.92625 0.84585 0.82774 0.83285 0.84893 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.65 71.98 0.62 -1.76 16 2 C 0.04 0.84 3.05 44.90 0.14 0.98 16 3 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 4 C 0.01 0.18 5.35 86.29 0.46 0.64 16 5 N -0.51 -12.76 5.03 -870.94 -4.38 -17.14 16 6 C 0.01 0.22 6.14 86.29 0.53 0.75 16 7 C 0.01 0.11 5.75 86.29 0.50 0.61 16 8 N -0.51 -10.05 5.24 -866.54 -4.54 -14.60 16 9 C 0.02 0.39 5.49 86.31 0.47 0.86 16 10 C 0.03 0.77 2.88 44.17 0.13 0.90 16 11 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 12 C 0.51 17.07 6.57 87.66 0.58 17.65 16 13 O -0.57 -25.00 13.59 -3.02 -0.04 -25.04 16 14 N -0.71 -22.31 4.70 -446.09 -2.10 -24.41 16 15 C 0.21 8.54 2.21 44.24 0.10 8.64 16 16 H 0.06 2.67 7.43 -2.38 -0.02 2.66 16 17 C 0.00 0.05 3.81 29.85 0.11 0.16 16 18 C -0.51 -30.21 9.19 25.60 0.24 -29.98 16 19 H 0.05 3.06 6.65 -2.91 -0.02 3.04 16 20 C 0.01 0.77 5.47 84.65 0.46 1.23 16 21 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 22 Si 0.94 46.66 27.38 68.60 1.88 48.53 16 23 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 24 H -0.25 -11.58 6.68 99.48 0.66 -10.92 16 25 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 26 C -0.08 -2.77 4.49 -19.87 -0.09 -2.86 16 27 C -0.12 -3.60 9.07 22.27 0.20 -3.40 16 28 C -0.12 -2.85 10.05 22.27 0.22 -2.62 16 29 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 30 C -0.13 -3.94 10.05 22.27 0.22 -3.71 16 31 C -0.12 -4.65 8.61 22.27 0.19 -4.46 16 32 H 0.07 1.07 6.27 -2.39 -0.01 1.06 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.07 2.60 5.35 -2.39 -0.01 2.59 16 36 H 0.09 2.18 7.61 -2.38 -0.02 2.17 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.16 6.15 -2.39 -0.01 1.14 16 41 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.07 1.63 7.31 -2.38 -0.02 1.61 16 43 H 0.41 9.58 6.53 -92.71 -0.61 8.97 16 44 H 0.02 1.12 7.52 -2.39 -0.02 1.10 16 45 H 0.00 0.10 7.31 -2.38 -0.02 0.08 16 46 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 47 H 0.14 3.19 6.90 -2.91 -0.02 3.17 16 48 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 49 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 50 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 51 H 0.10 4.03 7.83 -2.91 -0.02 4.00 16 Total: -1.00 -78.86 388.15 -3.29 -82.16 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.28 Total: 30.11 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 5.31 Total: -19.38 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -10.72 Total: -116.38 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.04 Total: -25.04 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.88 Total: 48.53 kcal Total: -78.86 -3.29 -82.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548674283.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.161 kcal (2) G-P(sol) polarization free energy of solvation -78.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds