Wall clock time and date at job start Wed Apr 1 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.58168 * 2 1 4 4 C 1.53207 * 109.58311 * 239.73066 * 2 1 3 5 5 N 1.47315 * 108.80722 * 240.07719 * 4 2 1 6 6 C 1.47315 * 110.07828 * 60.84605 * 5 4 2 7 7 C 1.53203 * 108.80360 * 299.14280 * 6 5 4 8 8 N 1.47314 * 108.80546 * 0.02562 * 7 6 5 9 9 C 1.47555 * 110.23630 * 299.19066 * 8 7 6 10 10 C 1.47272 * 110.15253 * 299.18180 * 5 4 2 11 11 H 1.08994 * 109.58388 * 300.86538 * 10 5 4 12 12 C 1.50703 * 109.57902 * 180.59820 * 10 5 4 13 13 O 1.21280 * 120.00137 * 3.72422 * 12 10 5 14 14 N 1.34781 * 120.00205 * 183.72702 * 12 10 5 15 15 C 1.46498 * 120.00066 * 179.97438 * 14 12 10 16 16 H 1.08993 * 109.46962 * 35.00499 * 15 14 12 17 17 C 1.53001 * 109.46848 * 155.00367 * 15 14 12 18 18 C 1.50712 * 109.46824 * 295.00128 * 17 15 14 19 19 H 1.07995 * 119.99802 * 359.97438 * 18 17 15 20 20 C 1.37878 * 119.99357 * 180.02562 * 18 17 15 21 21 N 1.31505 * 120.00444 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99257 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46967 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47092 * 60.00164 * 22 20 18 25 25 H 1.48495 * 109.47382 * 299.99951 * 22 20 18 26 26 C 1.50696 * 109.47223 * 275.00140 * 15 14 12 27 27 C 1.38235 * 120.00099 * 319.72534 * 26 15 14 28 28 C 1.38237 * 120.00040 * 179.76487 * 27 26 15 29 29 C 1.38235 * 119.99697 * 0.48977 * 28 27 26 30 30 C 1.38237 * 120.00214 * 359.78765 * 29 28 27 31 31 C 1.38228 * 119.99830 * 359.95806 * 30 29 28 32 32 H 1.09000 * 109.46966 * 180.27087 * 1 2 3 33 33 H 1.09000 * 109.47045 * 300.26968 * 1 2 3 34 34 H 1.08998 * 109.47610 * 60.27100 * 1 2 3 35 35 H 1.08998 * 109.58299 * 120.27836 * 4 2 1 36 36 H 1.09000 * 109.69287 * 359.93680 * 4 2 1 37 37 H 1.09005 * 109.57979 * 58.93891 * 6 5 4 38 38 H 1.08997 * 109.57558 * 179.34396 * 6 5 4 39 39 H 1.09007 * 109.57976 * 240.21224 * 7 6 5 40 40 H 1.09000 * 109.58341 * 119.80535 * 7 6 5 41 41 H 1.09002 * 109.61688 * 300.97951 * 9 8 7 42 42 H 1.09002 * 109.69099 * 180.48239 * 9 8 7 43 43 H 0.97000 * 119.99118 * 0.02562 * 14 12 10 44 44 H 1.08997 * 109.47056 * 175.00238 * 17 15 14 45 45 H 1.09002 * 109.47590 * 54.99807 * 17 15 14 46 46 H 0.96998 * 120.00081 * 359.97438 * 21 20 18 47 47 H 1.08005 * 120.00024 * 0.02562 * 27 26 15 48 48 H 1.07994 * 120.00146 * 180.25103 * 28 27 26 49 49 H 1.07997 * 119.99814 * 179.76354 * 29 28 27 50 50 H 1.08000 * 120.00020 * 179.97438 * 30 29 28 51 51 H 1.07995 * 120.00201 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0434 -0.7276 -1.2467 5 7 2.8580 -1.8794 -0.8225 6 6 2.0392 -2.8137 -0.0307 7 6 1.5260 -2.0860 1.2159 8 7 2.0261 -0.7005 1.1967 9 6 3.5015 -0.6902 1.2147 10 6 4.0125 -1.4207 -0.0315 11 1 4.6186 -0.7409 -0.6303 12 6 4.8442 -2.6071 0.3829 13 8 4.5494 -3.7186 -0.0024 14 7 5.9157 -2.4330 1.1818 15 6 6.7238 -3.5864 1.5851 16 1 6.7616 -4.3070 0.7682 17 6 8.1424 -3.1223 1.9218 18 6 8.8042 -2.5869 0.6782 19 1 8.2670 -2.5789 -0.2586 20 6 10.0960 -2.1084 0.7364 21 7 10.7507 -2.1196 1.8768 22 14 10.9166 -1.4454 -0.8053 23 1 12.2934 -0.9949 -0.4785 24 1 10.1323 -0.2984 -1.3293 25 1 10.9762 -2.5152 -1.8334 26 6 6.1059 -4.2334 2.7977 27 6 5.5786 -3.4491 3.8065 28 6 5.0073 -4.0427 4.9166 29 6 4.9725 -5.4205 5.0225 30 6 5.5050 -6.2048 4.0164 31 6 6.0715 -5.6113 2.9039 32 1 -0.3633 -1.0277 0.0049 33 1 -0.3633 0.5180 0.8876 34 1 -0.3634 0.5096 -0.8924 35 1 2.6537 -0.0477 -1.8411 36 1 1.1997 -1.0764 -1.8420 37 1 1.1940 -3.1554 -0.6283 38 1 2.6465 -3.6679 0.2688 39 1 1.8886 -2.5932 2.1101 40 1 0.4360 -2.0808 1.2131 41 1 3.8602 -1.1998 2.1090 42 1 3.8617 0.3386 1.2089 43 1 6.1511 -1.5440 1.4903 44 1 8.7183 -3.9641 2.3063 45 1 8.0984 -2.3372 2.6767 46 1 10.3247 -2.4642 2.6772 47 1 5.6091 -2.3725 3.7254 48 1 4.5917 -3.4300 5.7028 49 1 4.5297 -5.8843 5.8915 50 1 5.4782 -7.2813 4.0994 51 1 6.4871 -6.2239 2.1177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548674285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:04 Heat of formation + Delta-G solvation = 16.739142 kcal Electronic energy + Delta-G solvation = -31756.107605 eV Core-core repulsion = 27848.442741 eV Total energy + Delta-G solvation = -3907.664865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61397 -39.48844 -38.27067 -35.40920 -33.59240 -33.16540 -32.59563 -31.73948 -30.73177 -30.47855 -28.63863 -27.48440 -24.70846 -24.01496 -23.68327 -22.59956 -22.41129 -22.07303 -20.67329 -19.83888 -18.25219 -17.55993 -17.19012 -16.69774 -16.50966 -16.31176 -15.66885 -15.11863 -14.89374 -14.54325 -14.15422 -13.88364 -13.75809 -13.50233 -13.31824 -13.20927 -13.12611 -13.09117 -13.00232 -12.69994 -12.57268 -12.33090 -12.17596 -11.83314 -11.73024 -11.58532 -11.35641 -11.29046 -10.88350 -10.76703 -10.68917 -10.66847 -10.55832 -10.24505 -10.06990 -9.92270 -9.24310 -8.88038 -8.63075 -8.46938 -8.42400 -8.26510 -7.78551 -6.44345 -4.15689 1.66801 1.69589 2.99583 3.31035 3.39492 3.41968 3.60081 3.63823 4.03853 4.13667 4.42917 4.47698 4.58609 4.68484 4.74220 5.01994 5.05881 5.16494 5.17071 5.19988 5.20844 5.26793 5.28116 5.33303 5.40833 5.43472 5.47617 5.52858 5.59717 5.66863 5.70712 5.79920 5.82966 5.84136 5.89314 6.04199 6.07683 6.23747 6.30780 6.42927 6.45621 6.57105 6.73875 6.75380 6.80164 6.94610 6.96158 7.02705 7.16140 7.29484 7.38560 8.01847 8.05161 8.37234 8.67813 8.77843 9.55941 10.95655 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008760 B = 0.004404 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.432304 B = 6356.023748 C = 8651.632645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.034 3.966 3 H 0.088 0.912 4 C 0.015 3.985 5 N -0.490 5.490 6 C -0.001 4.001 7 C 0.007 3.993 8 N -0.508 5.508 9 C 0.019 3.981 10 C 0.022 3.978 11 H 0.112 0.888 12 C 0.522 3.478 13 O -0.531 6.531 14 N -0.698 5.698 15 C 0.194 3.806 16 H 0.087 0.913 17 C 0.011 3.989 18 C -0.600 4.600 19 H 0.052 0.948 20 C 0.019 3.981 21 N -0.909 5.909 22 Si 1.066 2.934 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.288 1.288 26 C -0.074 4.074 27 C -0.109 4.109 28 C -0.124 4.124 29 C -0.133 4.133 30 C -0.121 4.121 31 C -0.108 4.108 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.400 0.600 44 H 0.024 0.976 45 H 0.015 0.985 46 H 0.269 0.731 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.085 2.333 1.103 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 H 0.106 0.894 4 C -0.115 4.115 5 N -0.211 5.211 6 C -0.130 4.130 7 C -0.123 4.123 8 N -0.229 5.229 9 C -0.111 4.111 10 C -0.092 4.092 11 H 0.130 0.870 12 C 0.307 3.693 13 O -0.408 6.408 14 N -0.347 5.347 15 C 0.090 3.910 16 H 0.105 0.895 17 C -0.026 4.026 18 C -0.639 4.639 19 H 0.070 0.930 20 C -0.185 4.185 21 N -0.545 5.545 22 Si 0.895 3.105 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.214 1.214 26 C -0.075 4.075 27 C -0.127 4.127 28 C -0.142 4.142 29 C -0.152 4.152 30 C -0.139 4.139 31 C -0.127 4.127 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.234 0.766 44 H 0.042 0.958 45 H 0.033 0.967 46 H 0.079 0.921 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.133 0.867 50 H 0.135 0.865 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.869 2.192 0.237 18.004 hybrid contribution -1.223 -0.205 0.719 1.433 sum -19.092 1.986 0.955 19.219 Atomic orbital electron populations 1.21871 0.93710 1.02123 1.02098 1.22475 0.96533 0.98687 0.89966 0.89415 1.23064 0.98260 0.93082 0.97129 1.63619 1.06893 1.13293 1.37291 1.23218 0.98363 0.97626 0.93833 1.22968 1.00968 0.88891 0.99449 1.63982 1.07388 1.14440 1.37129 1.23000 0.88485 1.01854 0.97795 1.22417 0.93969 0.96415 0.96377 0.86974 1.20065 0.81114 0.89812 0.78358 1.90586 1.69463 1.25766 1.54937 1.45895 1.27755 1.11311 1.49777 1.20031 0.91183 0.87190 0.92624 0.89460 1.19501 0.88696 0.96493 0.97932 1.21945 1.01316 1.45486 0.95108 0.92998 1.25790 0.94631 0.95242 1.02851 1.70795 1.39945 1.43522 1.00245 0.83568 0.76260 0.76368 0.74333 1.20791 1.21471 1.21411 1.20557 0.96588 0.93761 0.96574 1.20890 0.98634 0.99537 0.93657 1.21048 1.00317 0.94871 0.97932 1.21012 1.01265 0.93960 0.98916 1.21054 0.99124 0.99424 0.94342 1.21023 0.99229 0.94376 0.98041 0.92429 0.91923 0.91976 0.90142 0.89739 0.90728 0.86883 0.90365 0.89992 0.89385 0.89180 0.76592 0.95775 0.96716 0.92068 0.86727 0.86675 0.86748 0.86531 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.66 37.15 0.32 -0.80 16 2 C 0.03 0.32 3.04 -67.40 -0.20 0.12 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.01 0.15 5.79 -3.49 -0.02 0.13 16 5 N -0.49 -6.72 5.03 -226.63 -1.14 -7.86 16 6 C 0.00 -0.01 5.69 -3.49 -0.02 -0.03 16 7 C 0.01 0.08 5.76 -3.49 -0.02 0.06 16 8 N -0.51 -5.75 5.25 -225.04 -1.18 -6.94 16 9 C 0.02 0.23 5.56 -3.35 -0.02 0.21 16 10 C 0.02 0.31 2.86 -68.54 -0.20 0.11 16 11 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 12 C 0.52 9.02 6.55 -10.98 -0.07 8.94 16 13 O -0.53 -10.86 13.57 5.56 0.08 -10.79 16 14 N -0.70 -12.21 3.69 -54.94 -0.20 -12.41 16 15 C 0.19 3.88 2.11 -69.08 -0.15 3.73 16 16 H 0.09 1.96 7.44 -51.93 -0.39 1.57 16 17 C 0.01 0.26 3.80 -27.88 -0.11 0.15 16 18 C -0.60 -15.89 8.84 -34.43 -0.30 -16.19 16 19 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 20 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 21 N -0.91 -26.61 13.65 55.43 0.76 -25.85 16 22 Si 1.07 24.56 29.90 -169.99 -5.08 19.47 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.07 -1.32 4.91 -104.62 -0.51 -1.84 16 27 C -0.11 -1.76 9.32 -39.58 -0.37 -2.12 16 28 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 29 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 30 C -0.12 -1.77 10.05 -39.59 -0.40 -2.17 16 31 C -0.11 -1.84 9.67 -39.58 -0.38 -2.22 16 32 H 0.06 0.47 6.29 -51.93 -0.33 0.15 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.82 7.62 -51.93 -0.40 0.43 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.11 1.86 5.34 -51.93 -0.28 1.59 16 39 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 40 H 0.08 0.84 6.16 -51.93 -0.32 0.52 16 41 H 0.09 1.11 7.38 -51.93 -0.38 0.73 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.40 6.47 8.40 -40.82 -0.34 6.13 16 44 H 0.02 0.61 8.01 -51.93 -0.42 0.20 16 45 H 0.01 0.35 8.01 -51.93 -0.42 -0.06 16 46 H 0.27 7.82 7.22 -40.82 -0.29 7.53 16 47 H 0.11 1.74 7.73 -52.48 -0.41 1.33 16 48 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 49 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 50 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 51 H 0.12 1.98 8.04 -52.49 -0.42 1.56 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -31.11 395.28 -12.40 -43.51 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -8.24 Total: 10.77 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -3.34 Total: -15.87 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -1.77 Total: -53.06 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.47 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.11 -12.40 -43.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548674285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.249 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds