Wall clock time and date at job start Wed Apr 1 2020 02:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47159 * 2 1 4 4 N 1.46496 * 109.46891 * 180.02562 * 3 2 1 5 5 C 1.36932 * 120.00152 * 275.30496 * 4 3 2 6 6 H 1.08002 * 119.99667 * 37.58798 * 5 4 3 7 7 C 1.38816 * 120.00423 * 217.58400 * 5 4 3 8 8 N 1.31614 * 119.99878 * 21.42858 * 7 5 4 9 9 Si 1.86796 * 119.99896 * 201.42964 * 7 5 4 10 10 H 1.48502 * 109.47681 * 89.99870 * 9 7 5 11 11 H 1.48508 * 109.46971 * 209.99866 * 9 7 5 12 12 H 1.48506 * 109.47331 * 329.99870 * 9 7 5 13 13 C 1.46499 * 120.00167 * 95.31501 * 4 3 2 14 14 C 1.52998 * 109.47149 * 269.99847 * 13 4 3 15 15 N 1.46501 * 109.47666 * 179.97438 * 14 13 4 16 16 C 1.34769 * 120.00370 * 179.97438 * 15 14 13 17 17 O 1.21281 * 120.00183 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00230 * 180.02562 * 16 15 14 19 19 C 1.50696 * 109.47510 * 179.97438 * 18 16 15 20 20 C 1.34238 * 126.50293 * 90.01941 * 19 18 16 21 21 C 1.50704 * 125.03340 * 359.97438 * 20 19 18 22 22 N 1.36835 * 109.93002 * 179.71579 * 20 19 18 23 23 H 0.97001 * 125.05769 * 180.24373 * 22 20 19 24 24 C 1.37685 * 109.87281 * 0.27182 * 22 20 19 25 25 C 1.39125 * 133.50655 * 180.02562 * 24 22 20 26 26 C 1.37748 * 119.78035 * 179.97438 * 25 24 22 27 27 C 1.38827 * 120.66673 * 0.03866 * 26 25 24 28 28 C 1.36629 * 120.52565 * 359.95861 * 27 26 25 29 29 C 1.39628 * 119.76484 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47235 * 59.99354 * 1 2 3 31 31 H 1.09000 * 109.47024 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46753 * 299.99579 * 1 2 3 33 33 H 1.09008 * 109.46971 * 240.00715 * 2 1 3 34 34 H 1.08993 * 109.47142 * 120.00235 * 2 1 3 35 35 H 1.08996 * 109.46721 * 60.00111 * 3 2 1 36 36 H 1.08999 * 109.46863 * 300.00210 * 3 2 1 37 37 H 0.97000 * 120.00147 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.47813 * 149.99538 * 13 4 3 39 39 H 1.09003 * 109.47115 * 29.99514 * 13 4 3 40 40 H 1.09007 * 109.47114 * 59.99473 * 14 13 4 41 41 H 1.09003 * 109.46840 * 299.99835 * 14 13 4 42 42 H 0.97004 * 119.99613 * 359.97438 * 15 14 13 43 43 H 1.09007 * 109.47241 * 59.99763 * 18 16 15 44 44 H 1.09003 * 109.47040 * 299.99926 * 18 16 15 45 45 H 1.09002 * 109.46346 * 269.71567 * 21 20 19 46 46 H 1.08994 * 109.47351 * 149.71901 * 21 20 19 47 47 H 1.08997 * 109.46949 * 29.71267 * 21 20 19 48 48 H 1.08006 * 120.11068 * 359.97189 * 25 24 22 49 49 H 1.08000 * 119.66846 * 180.02562 * 26 25 24 50 50 H 1.08002 * 119.73846 * 179.97438 * 27 26 25 51 51 H 1.08007 * 120.11466 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3326 1.1798 6 1 3.8186 0.6869 1.9618 7 6 5.3624 2.0511 1.3715 8 7 5.6025 3.1239 0.6479 9 14 6.5990 1.4952 2.6565 10 1 7.5687 0.5566 2.0370 11 1 7.3245 2.6766 3.1889 12 1 5.8868 0.8107 3.7654 13 6 4.2370 1.5602 -1.2641 14 6 4.4917 0.1649 -1.8378 15 7 5.2232 0.2825 -3.1017 16 6 5.5602 -0.8256 -3.7909 17 8 5.2583 -1.9201 -3.3647 18 6 6.3131 -0.7046 -5.0907 19 6 6.5650 -2.0790 -5.6552 20 6 5.7640 -2.7579 -6.4915 21 6 4.4459 -2.2575 -7.0238 22 7 6.3242 -3.9692 -6.7934 23 1 5.9320 -4.6334 -7.3816 24 6 7.5271 -4.1051 -6.1374 25 6 8.4848 -5.1133 -6.0920 26 6 9.6149 -4.9491 -5.3218 27 6 9.8091 -3.7867 -4.5881 28 6 8.8816 -2.7839 -4.6182 29 6 7.7288 -2.9291 -5.3925 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 6.4218 3.6257 0.7815 38 1 5.1895 2.0597 -1.0872 39 1 3.6476 2.1422 -1.9727 40 1 3.5392 -0.3347 -2.0148 41 1 5.0811 -0.4172 -1.1293 42 1 5.4650 1.1579 -3.4425 43 1 7.2655 -0.2047 -4.9138 44 1 5.7236 -0.1228 -5.7993 45 1 3.6438 -2.5605 -6.3509 46 1 4.2695 -2.6801 -8.0129 47 1 4.4712 -1.1699 -7.0926 48 1 8.3425 -6.0216 -6.6587 49 1 10.3574 -5.7328 -5.2882 50 1 10.7006 -3.6740 -3.9889 51 1 9.0393 -1.8825 -4.0445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567429418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:27 Heat of formation + Delta-G solvation = 2.564604 kcal Electronic energy + Delta-G solvation = -29672.939045 eV Core-core repulsion = 25764.659526 eV Total energy + Delta-G solvation = -3908.279519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.31639 -40.43498 -38.24391 -37.96195 -35.63731 -34.60004 -34.21221 -32.62132 -31.89598 -31.28760 -29.99820 -28.68781 -27.34173 -27.04763 -25.01954 -23.18552 -22.68713 -22.31715 -21.97091 -21.57565 -20.03019 -18.73795 -18.54163 -17.77738 -17.41841 -17.01217 -16.68323 -16.35300 -16.00720 -15.90627 -15.67967 -15.59045 -15.03398 -14.77929 -14.75755 -14.50904 -14.38627 -14.20696 -13.90074 -13.80212 -13.49927 -13.32335 -13.09232 -13.08055 -12.91655 -12.75321 -12.62212 -12.52553 -12.34123 -12.21796 -12.19412 -12.02182 -11.87220 -11.71067 -11.65010 -11.32542 -10.91911 -10.53350 -10.43244 -9.93801 -9.05746 -8.59497 -8.50960 -7.85703 -5.48692 0.20387 0.70589 1.42372 1.47004 1.53185 1.59526 1.79026 2.19571 2.40932 2.54911 3.00420 3.21876 3.72868 3.76444 3.86378 3.97283 4.14384 4.20376 4.23248 4.27603 4.35641 4.39155 4.41358 4.46743 4.57758 4.58306 4.61174 4.68910 4.75017 4.77483 4.81231 4.86633 4.92552 4.99321 5.05811 5.09894 5.17515 5.23501 5.24786 5.27562 5.43383 5.50939 5.56443 5.62830 5.66674 5.71006 5.76745 5.79107 5.89017 6.25156 6.45124 6.72127 6.74973 7.15166 7.42478 7.83344 8.34975 9.09593 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.002813 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.467891 B = 9952.568233 C =11582.737993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.598 5.598 5 C -0.270 4.270 6 H 0.049 0.951 7 C -0.026 4.026 8 N -0.908 5.908 9 Si 0.948 3.052 10 H -0.291 1.291 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.146 3.854 14 C 0.123 3.877 15 N -0.717 5.717 16 C 0.506 3.494 17 O -0.586 6.586 18 C -0.054 4.054 19 C -0.185 4.185 20 C 0.096 3.904 21 C -0.093 4.093 22 N -0.585 5.585 23 H 0.427 0.573 24 C 0.076 3.924 25 C -0.133 4.133 26 C -0.109 4.109 27 C -0.154 4.154 28 C -0.099 4.099 29 C -0.120 4.120 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.051 0.949 37 H 0.254 0.746 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.020 0.980 42 H 0.412 0.588 43 H 0.110 0.890 44 H 0.133 0.867 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.145 0.855 49 H 0.152 0.848 50 H 0.137 0.863 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.331 -10.493 -20.243 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.021 3.979 4 N -0.318 5.318 5 C -0.401 4.401 6 H 0.067 0.933 7 C -0.224 4.224 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.218 1.218 11 H -0.213 1.213 12 H -0.197 1.197 13 C 0.019 3.981 14 C -0.004 4.004 15 N -0.369 5.369 16 C 0.294 3.706 17 O -0.466 6.466 18 C -0.094 4.094 19 C -0.192 4.192 20 C -0.013 4.013 21 C -0.150 4.150 22 N -0.189 5.189 23 H 0.267 0.733 24 C -0.031 4.031 25 C -0.154 4.154 26 C -0.128 4.128 27 C -0.173 4.173 28 C -0.117 4.117 29 C -0.124 4.124 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.248 0.752 43 H 0.128 0.872 44 H 0.150 0.850 45 H 0.089 0.911 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.163 0.837 49 H 0.170 0.830 50 H 0.154 0.846 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.130 -11.180 -19.987 22.929 hybrid contribution 0.817 -0.193 0.879 1.216 sum 1.947 -11.373 -19.108 22.321 Atomic orbital electron populations 1.21651 0.94145 1.01743 1.02077 1.22019 0.96498 0.98866 1.00090 1.21040 0.83331 0.94424 0.99118 1.43847 1.00894 1.85073 1.02028 1.19136 1.06327 1.19836 0.94774 0.93329 1.25710 1.01997 0.94729 0.99988 1.70071 1.25855 1.15431 1.43783 0.85585 0.79699 0.77331 0.79757 1.21828 1.21264 1.19731 1.20922 0.99156 0.91904 0.86100 1.21827 0.94125 1.00642 0.83804 1.46002 1.57977 1.09689 1.23247 1.21403 0.78911 0.83496 0.86818 1.90661 1.56308 1.28469 1.71164 1.19963 1.01841 0.94794 0.92836 1.19567 0.96343 0.97794 1.05490 1.20487 0.96420 0.85622 0.98746 1.20596 0.89618 1.03139 1.01642 1.41602 1.17426 1.16906 1.43009 0.73338 1.18468 0.89275 0.97174 0.98168 1.20364 0.93636 0.98019 1.03348 1.21142 0.97354 0.98009 0.96280 1.20917 1.00144 0.94382 1.01814 1.20460 0.93235 0.99869 0.98171 1.19387 0.96524 0.95467 1.01062 0.91915 0.92363 0.92576 0.93742 0.94575 0.94666 0.93053 0.93661 0.90910 0.93520 0.93702 0.96147 0.75178 0.87223 0.84954 0.91060 0.88729 0.88351 0.83746 0.83016 0.84551 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.13 -4.96 6.23 30.60 0.19 -4.77 16 3 C 0.15 6.06 5.72 86.38 0.49 6.56 16 4 N -0.60 -29.39 2.43 -702.01 -1.71 -31.10 16 5 C -0.27 -14.88 9.45 84.04 0.79 -14.08 16 6 H 0.05 2.74 7.92 -2.91 -0.02 2.72 16 7 C -0.03 -1.43 4.95 84.86 0.42 -1.01 16 8 N -0.91 -51.16 11.47 21.65 0.25 -50.91 16 9 Si 0.95 45.07 29.60 68.60 2.03 47.10 16 10 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 C 0.15 6.54 5.45 86.38 0.47 7.01 16 14 C 0.12 5.14 6.00 86.38 0.52 5.66 16 15 N -0.72 -23.79 5.56 -463.06 -2.57 -26.36 16 16 C 0.51 17.06 7.82 87.66 0.69 17.74 16 17 O -0.59 -25.65 16.03 -3.03 -0.05 -25.70 16 18 C -0.05 -1.30 5.98 29.10 0.17 -1.13 16 19 C -0.18 -5.04 4.81 -18.63 -0.09 -5.13 16 20 C 0.10 2.17 7.08 40.87 0.29 2.46 16 21 C -0.09 -1.39 10.18 71.24 0.73 -0.66 16 22 N -0.58 -12.11 6.07 -175.91 -1.07 -13.18 16 23 H 0.43 5.70 8.96 -92.71 -0.83 4.87 16 24 C 0.08 1.94 7.28 39.03 0.28 2.22 16 25 C -0.13 -2.80 10.08 22.37 0.23 -2.58 16 26 C -0.11 -2.23 10.01 22.29 0.22 -2.00 16 27 C -0.15 -3.67 9.97 22.03 0.22 -3.45 16 28 C -0.10 -2.83 10.05 22.23 0.22 -2.61 16 29 C -0.12 -3.56 6.35 -20.20 -0.13 -3.69 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.69 6.64 -2.38 -0.02 1.67 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.03 1.51 8.08 -2.39 -0.02 1.49 16 36 H 0.05 1.93 7.83 -2.39 -0.02 1.91 16 37 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 38 H 0.07 3.69 5.52 -2.39 -0.01 3.67 16 39 H 0.05 1.88 7.86 -2.39 -0.02 1.86 16 40 H 0.04 1.92 6.64 -2.38 -0.02 1.90 16 41 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.41 10.98 8.47 -92.71 -0.79 10.19 16 43 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 44 H 0.13 2.14 7.05 -2.39 -0.02 2.12 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.10 1.19 7.03 -2.39 -0.02 1.17 16 48 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 49 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 50 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 51 H 0.11 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -75.49 417.51 2.64 -72.85 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.67 Total: 29.90 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 6.43 Total: -2.61 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -5.10 Total: -121.55 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.05 Total: -25.70 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -75.49 2.64 -72.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567429418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.417 kcal (2) G-P(sol) polarization free energy of solvation -75.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds