Wall clock time and date at job start Wed Apr 1 2020 02:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47273 * 2 1 4 4 N 1.46504 * 109.47115 * 185.39489 * 3 2 1 5 5 C 1.34780 * 119.99711 * 97.87407 * 4 3 2 6 6 O 1.21509 * 120.00016 * 185.73490 * 5 4 3 7 7 C 1.48146 * 119.99659 * 5.74533 * 5 4 3 8 8 C 1.39837 * 120.92340 * 315.49073 * 7 5 4 9 9 C 1.38121 * 119.00067 * 180.02562 * 8 7 5 10 10 N 1.31824 * 120.90306 * 0.26404 * 9 8 7 11 11 C 1.31798 * 122.04567 * 359.46976 * 10 9 8 12 12 C 1.50700 * 119.55633 * 180.27599 * 11 10 9 13 13 C 1.53000 * 117.50321 * 163.87529 * 12 11 10 14 14 C 1.52997 * 117.50195 * 95.24681 * 12 11 10 15 15 C 1.38173 * 120.89588 * 0.52704 * 11 10 9 16 16 C 1.46500 * 119.99969 * 277.88167 * 4 3 2 17 17 H 1.08994 * 110.64693 * 359.29584 * 16 4 3 18 18 C 1.55157 * 110.71812 * 122.44134 * 16 4 3 19 19 C 1.55126 * 101.48539 * 153.73039 * 18 16 4 20 20 N 1.47422 * 104.94141 * 323.22065 * 19 18 16 21 21 C 1.36940 * 125.64585 * 203.96654 * 20 19 18 22 22 H 1.08005 * 119.99618 * 180.02562 * 21 20 19 23 23 C 1.38808 * 120.00334 * 0.04062 * 21 20 19 24 24 N 1.31621 * 119.99707 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00253 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47027 * 60.00096 * 25 23 21 27 27 H 1.48502 * 109.47251 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47055 * 300.00179 * 25 23 21 29 29 C 1.47022 * 108.70612 * 24.00542 * 20 19 18 30 30 H 1.08999 * 109.47617 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47293 * 300.00399 * 1 2 3 32 32 H 1.09002 * 109.46918 * 59.99985 * 1 2 3 33 33 H 1.08995 * 109.47293 * 239.99601 * 2 1 3 34 34 H 1.09002 * 109.46918 * 120.00015 * 2 1 3 35 35 H 1.09000 * 109.47056 * 65.40087 * 3 2 1 36 36 H 1.08995 * 109.47176 * 305.39865 * 3 2 1 37 37 H 1.07995 * 120.49924 * 0.02562 * 8 7 5 38 38 H 1.08003 * 119.54706 * 179.97438 * 9 8 7 39 39 H 1.09006 * 115.54718 * 309.57622 * 12 11 10 40 40 H 1.09001 * 117.49527 * 359.97438 * 13 12 11 41 41 H 1.08994 * 117.50043 * 145.02206 * 13 12 11 42 42 H 1.08997 * 117.49844 * 214.97857 * 14 12 11 43 43 H 1.09000 * 117.49981 * 0.02562 * 14 12 11 44 44 H 1.07999 * 120.50316 * 179.72443 * 15 11 10 45 45 H 1.09004 * 111.00305 * 271.93099 * 18 16 4 46 46 H 1.08994 * 111.01015 * 35.78951 * 18 16 4 47 47 H 1.08994 * 110.42149 * 204.28878 * 19 18 16 48 48 H 1.09002 * 110.29890 * 82.08757 * 19 18 16 49 49 H 0.97003 * 119.99786 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.88032 * 239.52436 * 29 20 19 51 51 H 1.08992 * 109.88889 * 118.35703 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4993 1.4445 -0.1299 5 6 4.0682 1.6415 -1.3357 6 8 5.2723 1.5399 -1.4633 7 6 3.2254 1.9820 -2.5055 8 6 2.0311 1.2985 -2.7541 9 6 1.2764 1.6483 -3.8568 10 7 1.6710 2.6071 -4.6708 11 6 2.7868 3.2794 -4.4704 12 6 3.1813 4.3692 -5.4337 13 6 4.2526 5.3617 -4.9775 14 6 2.7912 5.8045 -5.0750 15 6 3.6025 2.9952 -3.3920 16 6 4.3400 1.2322 1.0509 17 1 3.7257 1.1019 1.9418 18 6 5.2759 0.0117 0.8462 19 6 6.4575 0.3673 1.7863 20 7 6.6099 1.8289 1.6690 21 6 7.7557 2.5347 1.9227 22 1 7.7651 3.6085 1.8073 23 6 8.9050 1.8701 2.3279 24 7 8.8933 0.5615 2.4687 25 14 10.4681 2.8328 2.6732 26 1 10.2166 3.8109 3.7620 27 1 11.5443 1.8972 3.0878 28 1 10.8857 3.5556 1.4451 29 6 5.3279 2.4034 1.2355 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.7578 1.9276 0.9344 36 1 1.5999 1.9834 -0.8376 37 1 1.7037 0.5091 -2.0939 38 1 0.3526 1.1259 -4.0574 39 1 3.1674 4.0924 -6.4880 40 1 4.6718 5.2267 -3.9805 41 1 4.9438 5.7381 -5.7316 42 1 2.5212 6.4721 -5.8932 43 1 2.2497 5.9606 -4.1420 44 1 4.5177 3.5471 -3.2364 45 1 4.7881 -0.9115 1.1592 46 1 5.6090 -0.0560 -0.1894 47 1 7.3675 -0.1364 1.4606 48 1 6.2193 0.0919 2.8137 49 1 9.6966 0.0970 2.7515 50 1 5.4586 2.9305 0.2904 51 1 4.9527 3.0886 1.9955 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567684414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:58 Heat of formation + Delta-G solvation = 73.593709 kcal Electronic energy + Delta-G solvation = -30960.551801 eV Core-core repulsion = 27055.352336 eV Total energy + Delta-G solvation = -3905.199466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.10019 -39.66831 -37.26310 -36.79288 -36.13408 -33.21301 -32.74963 -31.65640 -31.07489 -29.10498 -27.44026 -26.34352 -24.97620 -24.76742 -23.92086 -22.57089 -21.98777 -21.58002 -20.84673 -20.09348 -18.80523 -17.42118 -17.10533 -16.69561 -16.56880 -16.01303 -15.51364 -15.20527 -14.86268 -14.70990 -14.47969 -14.29120 -14.05421 -13.82182 -13.75644 -13.39686 -13.02521 -12.55100 -12.53246 -12.33755 -12.11030 -11.92937 -11.69398 -11.60659 -11.52902 -11.43780 -11.12915 -10.95586 -10.90405 -10.85498 -10.73577 -10.70101 -10.53900 -10.07915 -9.92717 -9.88625 -9.73035 -9.48795 -9.14163 -9.08072 -8.56574 -8.38654 -6.72523 -5.55885 -2.96538 0.71409 0.86740 2.80062 2.97741 3.39101 3.46414 3.50082 3.51768 3.64968 3.93834 4.24562 4.50157 4.57638 4.63850 4.64678 4.68063 4.73335 4.81936 4.88694 4.93651 5.04183 5.16989 5.25614 5.37853 5.38320 5.41251 5.44639 5.52828 5.57722 5.58255 5.62445 5.65883 5.75571 5.78181 5.79879 5.84308 5.88643 5.89875 5.93996 6.10398 6.26112 6.40122 6.54204 6.57931 6.64571 6.76947 7.15605 7.48039 7.62562 7.71094 7.73818 7.94944 8.30407 8.46400 9.31048 9.92148 10.57027 11.48086 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010374 B = 0.003470 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.335652 B = 8066.579278 C =10216.060306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 C 0.096 3.904 4 N -0.596 5.596 5 C 0.548 3.452 6 O -0.491 6.491 7 C -0.069 4.069 8 C -0.166 4.166 9 C 0.098 3.902 10 N -0.470 5.470 11 C 0.157 3.843 12 C -0.108 4.108 13 C -0.173 4.173 14 C -0.161 4.161 15 C -0.120 4.120 16 C 0.135 3.865 17 H 0.090 0.910 18 C -0.157 4.157 19 C 0.158 3.842 20 N -0.595 5.595 21 C -0.216 4.216 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.923 5.923 25 Si 0.914 3.086 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.134 3.866 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.145 0.855 45 H 0.053 0.947 46 H 0.083 0.917 47 H 0.107 0.893 48 H 0.009 0.991 49 H 0.251 0.749 50 H 0.033 0.967 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.607 2.536 -11.684 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C -0.027 4.027 4 N -0.329 5.329 5 C 0.334 3.666 6 O -0.364 6.364 7 C -0.080 4.080 8 C -0.186 4.186 9 C -0.059 4.059 10 N -0.180 5.180 11 C 0.019 3.981 12 C -0.127 4.127 13 C -0.210 4.210 14 C -0.198 4.198 15 C -0.141 4.141 16 C 0.033 3.967 17 H 0.108 0.892 18 C -0.196 4.196 19 C 0.033 3.967 20 N -0.321 5.321 21 C -0.345 4.345 22 H 0.093 0.907 23 C -0.207 4.207 24 N -0.572 5.572 25 Si 0.745 3.255 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.007 3.993 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.170 0.830 38 H 0.178 0.822 39 H 0.141 0.859 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.162 0.838 45 H 0.071 0.929 46 H 0.101 0.899 47 H 0.125 0.875 48 H 0.027 0.973 49 H 0.062 0.938 50 H 0.051 0.949 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -20.217 2.648 -12.367 23.847 hybrid contribution 1.115 0.150 1.025 1.522 sum -19.101 2.798 -11.342 22.391 Atomic orbital electron populations 1.21739 0.94900 1.02157 1.02136 1.22107 0.96209 0.97228 1.03192 1.21950 0.80117 0.97094 1.03534 1.47893 1.06334 1.71079 1.07554 1.18229 0.87574 0.78363 0.82435 1.90924 1.13570 1.48160 1.83738 1.20505 0.94869 0.96522 0.96131 1.22891 0.94405 1.01540 0.99718 1.22682 0.99359 0.93665 0.90173 1.67234 1.15027 1.06346 1.29359 1.20266 0.90057 0.94780 0.92966 1.20749 1.04981 0.88498 0.98491 1.23149 0.92126 1.02048 1.03705 1.22967 0.98049 0.95328 1.03491 1.22062 1.00772 0.97335 0.93909 1.22248 0.91367 0.97879 0.85230 0.89152 1.23498 0.97916 0.94754 1.03416 1.21881 0.96205 0.84913 0.93702 1.44273 1.05933 1.02846 1.79067 1.19003 0.87090 0.90726 1.37673 0.90745 1.24755 0.97972 0.95856 1.02107 1.69787 1.27525 1.06091 1.53839 0.86158 0.82880 0.78511 0.77987 1.21315 1.21594 1.21210 1.21459 0.87142 0.93466 0.97256 0.92234 0.92305 0.92522 0.91284 0.90755 0.90262 0.89683 0.82966 0.82211 0.85926 0.87985 0.87772 0.88091 0.88699 0.83776 0.92853 0.89893 0.87525 0.97259 0.93799 0.94931 0.96468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.86 37.16 0.37 -0.58 16 2 C -0.15 -1.28 5.30 -26.73 -0.14 -1.42 16 3 C 0.10 0.99 4.83 -4.04 -0.02 0.97 16 4 N -0.60 -8.84 2.54 -165.02 -0.42 -9.26 16 5 C 0.55 9.19 6.41 -12.19 -0.08 9.12 16 6 O -0.49 -10.63 13.40 5.36 0.07 -10.56 16 7 C -0.07 -0.94 5.14 -104.65 -0.54 -1.48 16 8 C -0.17 -1.74 7.52 -39.03 -0.29 -2.04 16 9 C 0.10 0.97 11.17 -17.60 -0.20 0.77 16 10 N -0.47 -5.56 10.25 -9.52 -0.10 -5.66 16 11 C 0.16 1.88 6.46 -82.63 -0.53 1.35 16 12 C -0.11 -1.07 6.21 -91.77 -0.57 -1.64 16 13 C -0.17 -1.53 9.79 -26.73 -0.26 -1.79 16 14 C -0.16 -1.34 10.23 -26.73 -0.27 -1.62 16 15 C -0.12 -1.60 9.06 -39.02 -0.35 -1.95 16 16 C 0.14 2.43 3.42 -66.09 -0.23 2.21 16 17 H 0.09 1.43 7.96 -51.93 -0.41 1.02 16 18 C -0.16 -3.20 6.43 -24.47 -0.16 -3.36 16 19 C 0.16 4.04 5.89 -2.41 -0.01 4.02 16 20 N -0.60 -16.12 3.40 -169.94 -0.58 -16.69 16 21 C -0.22 -6.34 10.27 -15.06 -0.15 -6.50 16 22 H 0.07 2.11 7.83 -52.48 -0.41 1.70 16 23 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 24 N -0.92 -27.89 10.09 55.49 0.56 -27.33 16 25 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 C 0.13 2.99 6.50 -3.06 -0.02 2.97 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16 33 H 0.07 0.62 6.26 -51.93 -0.33 0.30 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 36 H 0.09 0.80 5.02 -51.93 -0.26 0.54 16 37 H 0.15 1.34 3.66 -52.49 -0.19 1.15 16 38 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.10 0.99 6.39 -51.93 -0.33 0.66 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.14 1.95 6.25 -52.49 -0.33 1.63 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 1.88 5.84 -51.93 -0.30 1.57 16 47 H 0.11 3.10 5.87 -51.93 -0.31 2.79 16 48 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.03 0.78 6.25 -51.93 -0.32 0.46 16 51 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 395.89 15.07 5.97 5.97 Total: -1.00 -34.56 395.89 -10.90 -45.47 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.82 Total: 1.60 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -3.56 Total: -1.40 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.53 Total: -58.94 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.56 -10.90 -45.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567684414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.059 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds