Wall clock time and date at job start Wed Apr 1 2020 02:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47273 * 2 1 4 4 N 1.46504 * 109.47115 * 185.39489 * 3 2 1 5 5 C 1.34780 * 119.99711 * 97.87407 * 4 3 2 6 6 O 1.21509 * 120.00016 * 185.73490 * 5 4 3 7 7 C 1.48146 * 119.99659 * 5.74533 * 5 4 3 8 8 C 1.39837 * 120.92340 * 315.49073 * 7 5 4 9 9 C 1.38121 * 119.00067 * 180.02562 * 8 7 5 10 10 N 1.31824 * 120.90306 * 0.26404 * 9 8 7 11 11 C 1.31798 * 122.04567 * 359.46976 * 10 9 8 12 12 C 1.50700 * 119.55633 * 180.27599 * 11 10 9 13 13 C 1.53000 * 117.50321 * 163.87529 * 12 11 10 14 14 C 1.52997 * 117.50195 * 95.24681 * 12 11 10 15 15 C 1.38173 * 120.89588 * 0.52704 * 11 10 9 16 16 C 1.46500 * 119.99969 * 277.88167 * 4 3 2 17 17 H 1.08994 * 110.64693 * 359.29584 * 16 4 3 18 18 C 1.55157 * 110.71812 * 122.44134 * 16 4 3 19 19 C 1.55126 * 101.48539 * 153.73039 * 18 16 4 20 20 N 1.47422 * 104.94141 * 323.22065 * 19 18 16 21 21 C 1.36940 * 125.64585 * 203.96654 * 20 19 18 22 22 H 1.08005 * 119.99618 * 180.02562 * 21 20 19 23 23 C 1.38808 * 120.00334 * 0.04062 * 21 20 19 24 24 N 1.31621 * 119.99707 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00253 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47027 * 60.00096 * 25 23 21 27 27 H 1.48502 * 109.47251 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47055 * 300.00179 * 25 23 21 29 29 C 1.47022 * 108.70612 * 24.00542 * 20 19 18 30 30 H 1.08999 * 109.47617 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47293 * 300.00399 * 1 2 3 32 32 H 1.09002 * 109.46918 * 59.99985 * 1 2 3 33 33 H 1.08995 * 109.47293 * 239.99601 * 2 1 3 34 34 H 1.09002 * 109.46918 * 120.00015 * 2 1 3 35 35 H 1.09000 * 109.47056 * 65.40087 * 3 2 1 36 36 H 1.08995 * 109.47176 * 305.39865 * 3 2 1 37 37 H 1.07995 * 120.49924 * 0.02562 * 8 7 5 38 38 H 1.08003 * 119.54706 * 179.97438 * 9 8 7 39 39 H 1.09006 * 115.54718 * 309.57622 * 12 11 10 40 40 H 1.09001 * 117.49527 * 359.97438 * 13 12 11 41 41 H 1.08994 * 117.50043 * 145.02206 * 13 12 11 42 42 H 1.08997 * 117.49844 * 214.97857 * 14 12 11 43 43 H 1.09000 * 117.49981 * 0.02562 * 14 12 11 44 44 H 1.07999 * 120.50316 * 179.72443 * 15 11 10 45 45 H 1.09004 * 111.00305 * 271.93099 * 18 16 4 46 46 H 1.08994 * 111.01015 * 35.78951 * 18 16 4 47 47 H 1.08994 * 110.42149 * 204.28878 * 19 18 16 48 48 H 1.09002 * 110.29890 * 82.08757 * 19 18 16 49 49 H 0.97003 * 119.99786 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.88032 * 239.52436 * 29 20 19 51 51 H 1.08992 * 109.88889 * 118.35703 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4993 1.4445 -0.1299 5 6 4.0682 1.6415 -1.3357 6 8 5.2723 1.5399 -1.4633 7 6 3.2254 1.9820 -2.5055 8 6 2.0311 1.2985 -2.7541 9 6 1.2764 1.6483 -3.8568 10 7 1.6710 2.6071 -4.6708 11 6 2.7868 3.2794 -4.4704 12 6 3.1813 4.3692 -5.4337 13 6 4.2526 5.3617 -4.9775 14 6 2.7912 5.8045 -5.0750 15 6 3.6025 2.9952 -3.3920 16 6 4.3400 1.2322 1.0509 17 1 3.7257 1.1019 1.9418 18 6 5.2759 0.0117 0.8462 19 6 6.4575 0.3673 1.7863 20 7 6.6099 1.8289 1.6690 21 6 7.7557 2.5347 1.9227 22 1 7.7651 3.6085 1.8073 23 6 8.9050 1.8701 2.3279 24 7 8.8933 0.5615 2.4687 25 14 10.4681 2.8328 2.6732 26 1 10.2166 3.8109 3.7620 27 1 11.5443 1.8972 3.0878 28 1 10.8857 3.5556 1.4451 29 6 5.3279 2.4034 1.2355 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.7578 1.9276 0.9344 36 1 1.5999 1.9834 -0.8376 37 1 1.7037 0.5091 -2.0939 38 1 0.3526 1.1259 -4.0574 39 1 3.1674 4.0924 -6.4880 40 1 4.6718 5.2267 -3.9805 41 1 4.9438 5.7381 -5.7316 42 1 2.5212 6.4721 -5.8932 43 1 2.2497 5.9606 -4.1420 44 1 4.5177 3.5471 -3.2364 45 1 4.7881 -0.9115 1.1592 46 1 5.6090 -0.0560 -0.1894 47 1 7.3675 -0.1364 1.4606 48 1 6.2193 0.0919 2.8137 49 1 9.6966 0.0970 2.7515 50 1 5.4586 2.9305 0.2904 51 1 4.9527 3.0886 1.9955 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567684414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:57 Heat of formation + Delta-G solvation = 53.272879 kcal Electronic energy + Delta-G solvation = -30961.432979 eV Core-core repulsion = 27055.352336 eV Total energy + Delta-G solvation = -3906.080643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.17018 -40.82864 -38.56445 -37.97878 -37.28871 -34.78378 -33.68562 -33.26046 -31.92888 -31.02806 -29.12253 -27.23068 -26.76055 -25.64275 -25.23089 -23.37910 -22.80339 -22.54107 -22.09972 -22.00778 -20.00040 -19.00245 -18.48827 -17.89444 -17.49979 -17.17770 -16.72881 -16.67859 -16.13377 -15.84313 -15.73827 -15.62913 -15.20755 -14.98229 -14.72134 -14.68486 -14.31581 -14.03517 -13.78333 -13.42369 -13.28011 -13.08628 -13.01257 -12.91480 -12.74498 -12.68993 -12.46665 -12.30056 -12.29321 -12.08311 -12.03345 -11.86409 -11.78034 -11.61780 -11.44804 -11.39853 -11.02361 -10.87257 -10.74811 -10.36167 -9.91987 -9.71834 -8.89295 -7.78606 -5.22748 -0.26836 -0.01454 1.41942 1.46903 1.52659 1.55836 1.80186 2.48250 2.55911 2.83951 3.13522 3.22259 3.30974 3.69921 3.70945 3.80550 3.84437 3.86776 3.91609 3.97739 4.00782 4.10705 4.13624 4.16947 4.20502 4.36008 4.42008 4.55878 4.63913 4.64894 4.68719 4.72246 4.73670 4.78994 4.88389 4.91471 4.93875 4.99465 5.04047 5.04676 5.14769 5.19903 5.23602 5.29578 5.40090 5.51515 5.54343 5.59689 5.69594 5.77718 6.28079 6.30947 6.86933 7.03670 7.08743 7.76072 8.39964 9.23052 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010374 B = 0.003470 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.335652 B = 8066.579278 C =10216.060306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.090 3.910 4 N -0.588 5.588 5 C 0.545 3.455 6 O -0.553 6.553 7 C -0.084 4.084 8 C -0.153 4.153 9 C 0.108 3.892 10 N -0.480 5.480 11 C 0.155 3.845 12 C -0.121 4.121 13 C -0.178 4.178 14 C -0.147 4.147 15 C -0.139 4.139 16 C 0.153 3.847 17 H 0.124 0.876 18 C -0.140 4.140 19 C 0.161 3.839 20 N -0.618 5.618 21 C -0.241 4.241 22 H 0.074 0.926 23 C -0.066 4.066 24 N -0.948 5.948 25 Si 0.982 3.018 26 H -0.274 1.274 27 H -0.289 1.289 28 H -0.282 1.282 29 C 0.131 3.869 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.174 0.826 38 H 0.203 0.797 39 H 0.132 0.868 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.089 0.911 44 H 0.127 0.873 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.066 0.934 48 H -0.002 1.002 49 H 0.247 0.753 50 H 0.012 0.988 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.011 2.762 -12.332 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C -0.031 4.031 4 N -0.319 5.319 5 C 0.334 3.666 6 O -0.431 6.431 7 C -0.096 4.096 8 C -0.173 4.173 9 C -0.049 4.049 10 N -0.190 5.190 11 C 0.018 3.982 12 C -0.139 4.139 13 C -0.215 4.215 14 C -0.185 4.185 15 C -0.160 4.160 16 C 0.050 3.950 17 H 0.142 0.858 18 C -0.179 4.179 19 C 0.036 3.964 20 N -0.344 5.344 21 C -0.370 4.370 22 H 0.092 0.908 23 C -0.259 4.259 24 N -0.598 5.598 25 Si 0.810 3.190 26 H -0.199 1.199 27 H -0.215 1.215 28 H -0.208 1.208 29 C 0.004 3.996 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.191 0.809 38 H 0.220 0.780 39 H 0.150 0.850 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.108 0.892 44 H 0.145 0.855 45 H 0.105 0.895 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.016 0.984 49 H 0.057 0.943 50 H 0.030 0.970 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -23.697 2.892 -13.016 27.191 hybrid contribution 2.116 0.084 1.196 2.433 sum -21.581 2.976 -11.819 24.785 Atomic orbital electron populations 1.21719 0.92619 1.02983 1.03144 1.22066 0.98035 0.95436 1.02764 1.22323 0.76811 0.98936 1.05020 1.47910 1.08116 1.69947 1.05951 1.18769 0.87135 0.77102 0.83642 1.90895 1.16385 1.50957 1.84868 1.20325 0.96002 0.97890 0.95346 1.23084 0.92862 1.01121 1.00199 1.23378 1.00127 0.92554 0.88831 1.67350 1.14754 1.06947 1.29915 1.20482 0.89874 0.95200 0.92665 1.20857 1.05890 0.88696 0.98498 1.23173 0.92854 1.02192 1.03285 1.23040 0.97116 0.94416 1.03878 1.22028 1.00872 0.98043 0.95025 1.21978 0.91110 0.94298 0.87654 0.85821 1.23243 0.96749 0.97348 1.00599 1.21639 0.96590 0.84193 0.93985 1.44562 1.07053 1.03680 1.79092 1.19368 0.88590 0.91138 1.37916 0.90846 1.25644 1.01078 0.96946 1.02200 1.70058 1.27945 1.07446 1.54335 0.85106 0.78642 0.77283 0.78015 1.19935 1.21453 1.20822 1.21593 0.86645 0.95235 0.96081 0.91525 0.91798 0.91095 0.91645 0.91372 0.88619 0.88394 0.80903 0.78029 0.84979 0.89659 0.86310 0.85925 0.89244 0.85494 0.89517 0.92317 0.91638 0.98394 0.94289 0.97043 0.95589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.86 71.98 0.71 -0.49 16 2 C -0.14 -1.98 5.30 30.59 0.16 -1.82 16 3 C 0.09 1.59 4.83 86.38 0.42 2.00 16 4 N -0.59 -16.90 2.54 -794.29 -2.02 -18.92 16 5 C 0.55 18.68 6.41 86.87 0.56 19.24 16 6 O -0.55 -25.48 13.40 -3.74 -0.05 -25.53 16 7 C -0.08 -2.28 5.14 -19.88 -0.10 -2.38 16 8 C -0.15 -2.83 7.52 22.63 0.17 -2.66 16 9 C 0.11 1.75 11.17 84.67 0.95 2.70 16 10 N -0.48 -10.26 10.25 -184.05 -1.89 -12.15 16 11 C 0.15 3.60 6.46 42.55 0.27 3.88 16 12 C -0.12 -2.29 6.21 -11.54 -0.07 -2.36 16 13 C -0.18 -3.15 9.79 30.60 0.30 -2.85 16 14 C -0.15 -2.28 10.23 30.60 0.31 -1.97 16 15 C -0.14 -3.80 9.06 22.63 0.20 -3.59 16 16 C 0.15 5.42 3.42 46.18 0.16 5.57 16 17 H 0.12 3.60 7.96 -2.39 -0.02 3.58 16 18 C -0.14 -5.80 6.43 32.06 0.21 -5.60 16 19 C 0.16 8.57 5.89 86.93 0.51 9.09 16 20 N -0.62 -34.81 3.40 -691.56 -2.35 -37.16 16 21 C -0.24 -14.68 10.27 84.03 0.86 -13.81 16 22 H 0.07 4.33 7.83 -2.91 -0.02 4.31 16 23 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 24 N -0.95 -59.55 10.09 21.65 0.22 -59.33 16 25 Si 0.98 48.27 29.55 68.60 2.03 50.30 16 26 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 27 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 28 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 29 C 0.13 6.01 6.50 86.73 0.56 6.57 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.40 8.12 -2.39 -0.02 0.38 16 33 H 0.07 0.96 6.26 -2.39 -0.01 0.95 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 1.43 8.11 -2.39 -0.02 1.41 16 36 H 0.10 1.52 5.02 -2.39 -0.01 1.51 16 37 H 0.17 2.42 3.66 -2.91 -0.01 2.41 16 38 H 0.20 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.13 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.08 1.80 6.39 -2.39 -0.02 1.78 16 41 H 0.12 1.70 8.14 -2.39 -0.02 1.69 16 42 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.13 3.81 6.25 -2.91 -0.02 3.79 16 45 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 46 H 0.06 2.76 5.84 -2.39 -0.01 2.75 16 47 H 0.07 4.03 5.87 -2.39 -0.01 4.02 16 48 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 49 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 50 H 0.01 0.58 6.25 -2.39 -0.01 0.57 16 51 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -80.79 395.89 3.53 -77.26 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.94 Total: 17.54 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.65 Total: 7.99 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -6.04 Total: -127.56 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.05 Total: -25.53 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -80.79 3.53 -77.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567684414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.531 kcal (2) G-P(sol) polarization free energy of solvation -80.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds