Wall clock time and date at job start Wed Apr 1 2020 02:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47440 * 2 1 4 4 N 1.46496 * 109.47275 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00157 * 254.76347 * 4 3 2 6 6 O 1.21514 * 120.00078 * 184.94661 * 5 4 3 7 7 C 1.48154 * 120.00019 * 4.95712 * 5 4 3 8 8 C 1.39836 * 120.92097 * 24.48579 * 7 5 4 9 9 C 1.38124 * 119.00113 * 179.97438 * 8 7 5 10 10 N 1.31825 * 120.90104 * 0.02562 * 9 8 7 11 11 C 1.31797 * 122.04562 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.55356 * 180.02562 * 11 10 9 13 13 C 1.53000 * 117.49870 * 163.75224 * 12 11 10 14 14 C 1.53000 * 117.49896 * 95.08756 * 12 11 10 15 15 C 1.38168 * 120.89607 * 359.74732 * 11 10 9 16 16 C 1.46498 * 120.00127 * 74.77064 * 4 3 2 17 17 H 1.09001 * 110.91580 * 9.79433 * 16 4 3 18 18 C 1.55157 * 111.00305 * 245.89839 * 16 4 3 19 19 C 1.54328 * 102.94093 * 277.42440 * 18 16 4 20 20 N 1.47029 * 107.26999 * 337.80648 * 19 18 16 21 21 C 1.36937 * 125.64382 * 178.97434 * 20 19 18 22 22 H 1.08000 * 119.99155 * 179.97438 * 21 20 19 23 23 C 1.38807 * 120.00281 * 359.97438 * 21 20 19 24 24 N 1.31624 * 119.99876 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99849 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46835 * 60.00367 * 25 23 21 27 27 H 1.48504 * 109.46666 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47385 * 299.99858 * 25 23 21 29 29 C 1.47427 * 108.70440 * 358.94195 * 20 19 18 30 30 H 1.09004 * 109.47394 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47310 * 300.00341 * 1 2 3 32 32 H 1.09004 * 109.46543 * 60.00359 * 1 2 3 33 33 H 1.09003 * 109.47629 * 239.99387 * 2 1 3 34 34 H 1.09009 * 109.46890 * 119.99966 * 2 1 3 35 35 H 1.09003 * 109.46811 * 59.99796 * 3 2 1 36 36 H 1.09000 * 109.46994 * 300.00144 * 3 2 1 37 37 H 1.08005 * 120.49994 * 359.96071 * 8 7 5 38 38 H 1.08004 * 119.54923 * 179.97438 * 9 8 7 39 39 H 1.09000 * 115.54726 * 309.42291 * 12 11 10 40 40 H 1.08998 * 117.49903 * 359.97438 * 13 12 11 41 41 H 1.09005 * 117.49572 * 145.02409 * 13 12 11 42 42 H 1.08997 * 117.49996 * 214.98113 * 14 12 11 43 43 H 1.08999 * 117.50039 * 359.97438 * 14 12 11 44 44 H 1.08001 * 120.50539 * 180.28070 * 15 11 10 45 45 H 1.09003 * 110.72091 * 159.06315 * 18 16 4 46 46 H 1.08993 * 110.72003 * 35.78857 * 18 16 4 47 47 H 1.08990 * 109.88164 * 97.22752 * 19 18 16 48 48 H 1.09004 * 109.88264 * 218.23650 * 19 18 16 49 49 H 0.97006 * 119.99637 * 179.97438 * 24 23 21 50 50 H 1.08996 * 110.36475 * 142.96408 * 29 20 19 51 51 H 1.08998 * 110.36365 * 265.28980 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1784 1.7493 1.1270 6 8 5.3902 1.8374 1.1055 7 6 3.4413 1.9791 2.3915 8 6 2.1775 1.4178 2.5987 9 6 1.5259 1.6574 3.7927 10 7 2.0794 2.4033 4.7282 11 6 3.2681 2.9509 4.5736 12 6 3.8480 3.7934 5.6805 13 6 5.3484 4.0889 5.6313 14 6 4.7946 3.1081 6.6680 15 6 3.9924 2.7585 3.4128 16 6 4.2380 1.1090 -1.2232 17 1 3.5640 1.0557 -2.0782 18 6 5.0282 -0.2156 -1.0546 19 6 6.3169 0.2395 -0.3378 20 7 6.4847 1.6745 -0.6109 21 6 7.4987 2.4637 -0.1374 22 1 7.5334 3.5115 -0.3968 23 6 8.4818 1.9170 0.6759 24 7 8.4391 0.6401 0.9923 25 14 9.8653 2.9935 1.3212 26 1 9.2955 4.0949 2.1381 27 1 10.7779 2.1763 2.1606 28 1 10.6220 3.5650 0.1784 29 6 5.3810 2.1227 -1.4795 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 1.7177 0.8062 1.8364 38 1 0.5492 1.2285 3.9619 39 1 3.1938 4.5738 6.0693 40 1 5.9162 3.6736 4.7987 41 1 5.6814 5.0635 5.9883 42 1 4.7634 3.4379 7.7065 43 1 4.9975 2.0478 6.5175 44 1 4.9680 3.2066 3.2947 45 1 5.2609 -0.6522 -2.0259 46 1 4.4719 -0.9206 -0.4370 47 1 6.2220 0.0750 0.7354 48 1 7.1717 -0.3160 -0.7237 49 1 9.1264 0.2580 1.5603 50 1 5.0652 3.1285 -1.2029 51 1 5.6860 2.0940 -2.5256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567684415.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:01 Heat of formation + Delta-G solvation = 129.849914 kcal Electronic energy + Delta-G solvation = -32253.266438 eV Core-core repulsion = 28350.506424 eV Total energy + Delta-G solvation = -3902.760014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.83007 -39.43246 -37.06761 -36.14523 -36.04587 -32.95651 -32.30855 -31.35291 -30.73949 -28.97557 -27.38486 -26.10079 -24.66140 -24.45025 -23.89223 -22.33683 -21.72566 -21.36841 -20.62747 -19.83144 -18.36588 -17.11260 -16.88009 -16.46304 -16.36185 -15.75633 -15.05283 -14.93032 -14.67247 -14.44055 -14.31968 -14.00022 -13.68407 -13.63545 -13.54288 -13.33127 -12.70806 -12.38813 -12.03251 -11.96816 -11.82611 -11.75549 -11.59346 -11.51165 -11.39326 -11.15407 -10.95283 -10.73338 -10.70389 -10.62272 -10.59650 -10.41753 -10.06839 -9.98043 -9.69877 -9.51259 -9.41555 -9.37968 -8.78061 -8.66524 -8.37033 -7.85477 -6.24860 -5.40357 -2.65187 1.03708 1.20381 3.36026 3.39394 3.53727 3.58031 3.58912 3.77322 4.05601 4.25799 4.65353 4.72963 4.76279 4.80249 4.91036 4.92330 5.00012 5.09256 5.17083 5.20487 5.28765 5.33643 5.43224 5.49181 5.53325 5.63381 5.66581 5.70776 5.70951 5.82495 5.86130 5.88860 5.89671 5.92961 5.96907 6.06748 6.14322 6.18036 6.22825 6.26103 6.35573 6.52756 6.60446 6.64545 6.74125 6.77468 7.27486 7.77442 7.88891 7.96170 8.04151 8.11669 8.55734 9.05735 9.51668 10.13923 10.80239 11.72853 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007725 B = 0.006118 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3623.724766 B = 4575.582161 C = 7666.338353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.152 4.152 3 C 0.088 3.912 4 N -0.604 5.604 5 C 0.495 3.505 6 O -0.382 6.382 7 C -0.063 4.063 8 C -0.187 4.187 9 C 0.090 3.910 10 N -0.475 5.475 11 C 0.151 3.849 12 C -0.108 4.108 13 C -0.174 4.174 14 C -0.162 4.162 15 C -0.115 4.115 16 C 0.135 3.865 17 H 0.082 0.918 18 C -0.160 4.160 19 C 0.191 3.809 20 N -0.565 5.565 21 C -0.190 4.190 22 H 0.066 0.934 23 C -0.007 4.007 24 N -0.922 5.922 25 Si 0.898 3.102 26 H -0.290 1.290 27 H -0.294 1.294 28 H -0.290 1.290 29 C 0.130 3.870 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.147 0.853 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.244 0.756 50 H 0.034 0.966 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.741 0.819 2.449 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.190 4.190 3 C -0.036 4.036 4 N -0.341 5.341 5 C 0.278 3.722 6 O -0.246 6.246 7 C -0.074 4.074 8 C -0.206 4.206 9 C -0.067 4.067 10 N -0.185 5.185 11 C 0.014 3.986 12 C -0.126 4.126 13 C -0.211 4.211 14 C -0.199 4.199 15 C -0.136 4.136 16 C 0.030 3.970 17 H 0.100 0.900 18 C -0.199 4.199 19 C 0.066 3.934 20 N -0.291 5.291 21 C -0.319 4.319 22 H 0.084 0.916 23 C -0.202 4.202 24 N -0.571 5.571 25 Si 0.730 3.270 26 H -0.217 1.217 27 H -0.220 1.220 28 H -0.218 1.218 29 C 0.002 3.998 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.182 0.818 38 H 0.173 0.827 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.165 0.835 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -17.230 0.999 3.347 17.580 hybrid contribution 0.907 0.277 -0.362 1.015 sum -16.323 1.276 2.986 16.643 Atomic orbital electron populations 1.21750 0.95243 1.01979 1.02000 1.22105 0.95903 0.97853 1.03170 1.22225 0.81235 0.96481 1.03622 1.47631 1.04935 1.71291 1.10292 1.18589 0.88984 0.81680 0.82960 1.91680 1.09636 1.41140 1.82166 1.20845 0.94053 0.96346 0.96203 1.23381 0.95394 1.01938 0.99923 1.22632 0.99665 0.95368 0.89069 1.67179 1.11305 1.08216 1.31823 1.20242 0.90224 0.95134 0.93025 1.20722 0.92727 1.01124 0.98055 1.23184 0.94480 1.01052 1.02358 1.22961 1.02380 0.99012 0.95583 1.22154 1.01324 0.97625 0.92479 1.22287 0.93082 0.96597 0.84988 0.89973 1.23396 0.99884 0.95953 1.00704 1.21089 0.90121 0.84224 0.97919 1.44104 1.24952 1.05533 1.54477 1.18723 0.98807 0.91238 1.23166 0.91641 1.24549 0.98919 0.95973 1.00724 1.69936 1.35050 1.10578 1.41553 0.86402 0.82541 0.79444 0.78600 1.21712 1.22005 1.21770 1.21765 0.88434 0.95391 0.94192 0.92419 0.92559 0.92465 0.90911 0.91140 0.88542 0.91428 0.81809 0.82745 0.86255 0.87556 0.88021 0.88306 0.88660 0.83504 0.92000 0.92474 0.92674 0.95162 0.94520 0.94745 0.95972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.85 37.15 0.37 -0.72 16 2 C -0.15 -1.46 5.17 -26.73 -0.14 -1.60 16 3 C 0.09 1.00 4.83 -4.04 -0.02 0.98 16 4 N -0.60 -9.65 2.60 -164.66 -0.43 -10.08 16 5 C 0.49 9.60 6.99 -12.19 -0.09 9.51 16 6 O -0.38 -9.37 8.65 5.35 0.05 -9.32 16 7 C -0.06 -1.06 5.56 -104.65 -0.58 -1.64 16 8 C -0.19 -2.48 7.58 -39.03 -0.30 -2.77 16 9 C 0.09 1.13 11.17 -17.60 -0.20 0.93 16 10 N -0.48 -7.02 10.25 -9.52 -0.10 -7.12 16 11 C 0.15 2.32 6.46 -82.63 -0.53 1.78 16 12 C -0.11 -1.41 6.21 -91.77 -0.57 -1.98 16 13 C -0.17 -2.23 9.80 -26.69 -0.26 -2.49 16 14 C -0.16 -1.97 10.24 -26.69 -0.27 -2.25 16 15 C -0.12 -1.98 8.93 -39.02 -0.35 -2.33 16 16 C 0.13 2.28 3.62 -65.78 -0.24 2.04 16 17 H 0.08 1.12 8.01 -51.93 -0.42 0.71 16 18 C -0.16 -3.00 6.52 -24.89 -0.16 -3.16 16 19 C 0.19 4.78 4.21 -3.06 -0.01 4.77 16 20 N -0.57 -14.59 1.73 -170.07 -0.29 -14.89 16 21 C -0.19 -5.47 8.76 -15.06 -0.13 -5.60 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 24 N -0.92 -28.19 10.31 55.49 0.57 -27.62 16 25 Si 0.90 23.20 29.55 -169.99 -5.02 18.17 16 26 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 27 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 C 0.13 2.72 6.19 -2.53 -0.02 2.71 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.36 7.97 -51.93 -0.41 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.73 8.08 -51.93 -0.42 0.32 16 34 H 0.07 0.75 6.82 -51.92 -0.35 0.40 16 35 H 0.10 1.08 4.26 -51.93 -0.22 0.86 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.17 1.81 2.30 -52.48 -0.12 1.69 16 38 H 0.16 1.40 8.06 -52.48 -0.42 0.97 16 39 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.11 1.60 6.37 -51.93 -0.33 1.27 16 41 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.15 2.74 6.10 -52.49 -0.32 2.42 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.06 1.57 5.82 -51.93 -0.30 1.27 16 48 H 0.03 0.85 7.51 -51.93 -0.39 0.46 16 49 H 0.24 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -33.87 388.99 -10.87 -44.73 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.91 Total: 2.37 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -3.60 Total: -2.10 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.25 Total: -59.71 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.05 Total: -9.32 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.87 -10.87 -44.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567684415.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.581 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds