Wall clock time and date at job start Wed Apr 1 2020 02:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47440 * 2 1 4 4 N 1.46496 * 109.47275 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00157 * 254.76347 * 4 3 2 6 6 O 1.21514 * 120.00078 * 184.94661 * 5 4 3 7 7 C 1.48154 * 120.00019 * 4.95712 * 5 4 3 8 8 C 1.39836 * 120.92097 * 24.48579 * 7 5 4 9 9 C 1.38124 * 119.00113 * 179.97438 * 8 7 5 10 10 N 1.31825 * 120.90104 * 0.02562 * 9 8 7 11 11 C 1.31797 * 122.04562 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.55356 * 180.02562 * 11 10 9 13 13 C 1.53000 * 117.49870 * 163.75224 * 12 11 10 14 14 C 1.53000 * 117.49896 * 95.08756 * 12 11 10 15 15 C 1.38168 * 120.89607 * 359.74732 * 11 10 9 16 16 C 1.46498 * 120.00127 * 74.77064 * 4 3 2 17 17 H 1.09001 * 110.91580 * 9.79433 * 16 4 3 18 18 C 1.55157 * 111.00305 * 245.89839 * 16 4 3 19 19 C 1.54328 * 102.94093 * 277.42440 * 18 16 4 20 20 N 1.47029 * 107.26999 * 337.80648 * 19 18 16 21 21 C 1.36937 * 125.64382 * 178.97434 * 20 19 18 22 22 H 1.08000 * 119.99155 * 179.97438 * 21 20 19 23 23 C 1.38807 * 120.00281 * 359.97438 * 21 20 19 24 24 N 1.31624 * 119.99876 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99849 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46835 * 60.00367 * 25 23 21 27 27 H 1.48504 * 109.46666 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47385 * 299.99858 * 25 23 21 29 29 C 1.47427 * 108.70440 * 358.94195 * 20 19 18 30 30 H 1.09004 * 109.47394 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47310 * 300.00341 * 1 2 3 32 32 H 1.09004 * 109.46543 * 60.00359 * 1 2 3 33 33 H 1.09003 * 109.47629 * 239.99387 * 2 1 3 34 34 H 1.09009 * 109.46890 * 119.99966 * 2 1 3 35 35 H 1.09003 * 109.46811 * 59.99796 * 3 2 1 36 36 H 1.09000 * 109.46994 * 300.00144 * 3 2 1 37 37 H 1.08005 * 120.49994 * 359.96071 * 8 7 5 38 38 H 1.08004 * 119.54923 * 179.97438 * 9 8 7 39 39 H 1.09000 * 115.54726 * 309.42291 * 12 11 10 40 40 H 1.08998 * 117.49903 * 359.97438 * 13 12 11 41 41 H 1.09005 * 117.49572 * 145.02409 * 13 12 11 42 42 H 1.08997 * 117.49996 * 214.98113 * 14 12 11 43 43 H 1.08999 * 117.50039 * 359.97438 * 14 12 11 44 44 H 1.08001 * 120.50539 * 180.28070 * 15 11 10 45 45 H 1.09003 * 110.72091 * 159.06315 * 18 16 4 46 46 H 1.08993 * 110.72003 * 35.78857 * 18 16 4 47 47 H 1.08990 * 109.88164 * 97.22752 * 19 18 16 48 48 H 1.09004 * 109.88264 * 218.23650 * 19 18 16 49 49 H 0.97006 * 119.99637 * 179.97438 * 24 23 21 50 50 H 1.08996 * 110.36475 * 142.96408 * 29 20 19 51 51 H 1.08998 * 110.36365 * 265.28980 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1784 1.7493 1.1270 6 8 5.3902 1.8374 1.1055 7 6 3.4413 1.9791 2.3915 8 6 2.1775 1.4178 2.5987 9 6 1.5259 1.6574 3.7927 10 7 2.0794 2.4033 4.7282 11 6 3.2681 2.9509 4.5736 12 6 3.8480 3.7934 5.6805 13 6 5.3484 4.0889 5.6313 14 6 4.7946 3.1081 6.6680 15 6 3.9924 2.7585 3.4128 16 6 4.2380 1.1090 -1.2232 17 1 3.5640 1.0557 -2.0782 18 6 5.0282 -0.2156 -1.0546 19 6 6.3169 0.2395 -0.3378 20 7 6.4847 1.6745 -0.6109 21 6 7.4987 2.4637 -0.1374 22 1 7.5334 3.5115 -0.3968 23 6 8.4818 1.9170 0.6759 24 7 8.4391 0.6401 0.9923 25 14 9.8653 2.9935 1.3212 26 1 9.2955 4.0949 2.1381 27 1 10.7779 2.1763 2.1606 28 1 10.6220 3.5650 0.1784 29 6 5.3810 2.1227 -1.4795 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 1.7177 0.8062 1.8364 38 1 0.5492 1.2285 3.9619 39 1 3.1938 4.5738 6.0693 40 1 5.9162 3.6736 4.7987 41 1 5.6814 5.0635 5.9883 42 1 4.7634 3.4379 7.7065 43 1 4.9975 2.0478 6.5175 44 1 4.9680 3.2066 3.2947 45 1 5.2609 -0.6522 -2.0259 46 1 4.4719 -0.9206 -0.4370 47 1 6.2220 0.0750 0.7354 48 1 7.1717 -0.3160 -0.7237 49 1 9.1264 0.2580 1.5603 50 1 5.0652 3.1285 -1.2029 51 1 5.6860 2.0940 -2.5256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567684415.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:00 Heat of formation + Delta-G solvation = 110.368768 kcal Electronic energy + Delta-G solvation = -32254.111204 eV Core-core repulsion = 28350.506424 eV Total energy + Delta-G solvation = -3903.604780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.08934 -40.77458 -38.26132 -37.67220 -37.27239 -34.59068 -33.47760 -32.94897 -31.87579 -30.84398 -29.03474 -27.10111 -26.50149 -25.54937 -25.37482 -23.42870 -22.69191 -22.41799 -21.95372 -21.71532 -19.72588 -18.77618 -18.13082 -18.01019 -17.46203 -17.11385 -16.52559 -16.33810 -16.19065 -15.88314 -15.61442 -15.52277 -15.14963 -14.88049 -14.60435 -14.41699 -13.83853 -13.70123 -13.58680 -13.47448 -13.28886 -12.92157 -12.81871 -12.77630 -12.75339 -12.61583 -12.36537 -12.22980 -12.05032 -11.96477 -11.80907 -11.72506 -11.63529 -11.48335 -11.43498 -11.38046 -10.78521 -10.73821 -10.50391 -10.16912 -9.81448 -9.36718 -8.30602 -7.64118 -4.86753 -0.18639 0.03845 1.40050 1.43658 1.48702 2.07648 2.10578 2.58734 2.65124 2.88630 3.18518 3.47777 3.54105 3.73771 3.81205 3.87357 3.91468 3.91749 3.97331 4.09547 4.11508 4.15214 4.18616 4.22741 4.35914 4.44323 4.48256 4.63948 4.66220 4.71613 4.73760 4.76119 4.81569 4.89887 4.91143 4.96163 5.02914 5.05914 5.08451 5.12645 5.14791 5.18875 5.28101 5.33697 5.52332 5.56603 5.61348 5.81339 5.92844 6.01997 6.40355 6.63296 6.90091 7.31798 7.62855 8.03156 8.66881 9.47707 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007725 B = 0.006118 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3623.724766 B = 4575.582161 C = 7666.338353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.082 3.918 4 N -0.598 5.598 5 C 0.489 3.511 6 O -0.451 6.451 7 C -0.084 4.084 8 C -0.171 4.171 9 C 0.099 3.901 10 N -0.482 5.482 11 C 0.147 3.853 12 C -0.110 4.110 13 C -0.181 4.181 14 C -0.152 4.152 15 C -0.141 4.141 16 C 0.149 3.851 17 H 0.136 0.864 18 C -0.144 4.144 19 C 0.204 3.796 20 N -0.579 5.579 21 C -0.188 4.188 22 H 0.060 0.940 23 C -0.066 4.066 24 N -0.949 5.949 25 Si 0.954 3.046 26 H -0.288 1.288 27 H -0.299 1.299 28 H -0.280 1.280 29 C 0.123 3.877 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.191 0.809 38 H 0.203 0.797 39 H 0.141 0.859 40 H 0.072 0.928 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.011 0.989 48 H -0.016 1.016 49 H 0.232 0.768 50 H 0.023 0.977 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.106 0.878 2.010 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C -0.039 4.039 4 N -0.334 5.334 5 C 0.274 3.726 6 O -0.319 6.319 7 C -0.095 4.095 8 C -0.190 4.190 9 C -0.058 4.058 10 N -0.192 5.192 11 C 0.010 3.990 12 C -0.129 4.129 13 C -0.219 4.219 14 C -0.189 4.189 15 C -0.162 4.162 16 C 0.045 3.955 17 H 0.154 0.846 18 C -0.183 4.183 19 C 0.079 3.921 20 N -0.303 5.303 21 C -0.318 4.318 22 H 0.078 0.922 23 C -0.257 4.257 24 N -0.601 5.601 25 Si 0.786 3.214 26 H -0.215 1.215 27 H -0.226 1.226 28 H -0.206 1.206 29 C -0.004 4.004 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.208 0.792 38 H 0.219 0.781 39 H 0.159 0.841 40 H 0.090 0.910 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.096 0.904 44 H 0.132 0.868 45 H 0.103 0.897 46 H 0.088 0.912 47 H 0.029 0.971 48 H 0.002 0.998 49 H 0.042 0.958 50 H 0.041 0.959 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.669 1.080 2.867 21.884 hybrid contribution 2.129 0.284 -0.259 2.164 sum -19.540 1.364 2.608 19.760 Atomic orbital electron populations 1.21733 0.92837 1.02858 1.03116 1.22043 0.97829 0.95908 1.02716 1.22556 0.77914 0.98356 1.05111 1.47711 1.06998 1.69731 1.08928 1.19078 0.88587 0.80537 0.84402 1.91648 1.12386 1.44338 1.83542 1.20775 0.95741 0.97823 0.95208 1.23624 0.93547 1.00926 1.00899 1.23424 1.00860 0.93635 0.87858 1.67309 1.10739 1.08629 1.32495 1.20449 0.90427 0.95330 0.92778 1.20863 0.92764 1.01508 0.97754 1.23141 0.94548 1.02281 1.01906 1.23027 1.01184 0.97878 0.96836 1.22035 1.00704 0.99285 0.94162 1.22245 0.92833 0.93479 0.86967 0.84625 1.23222 0.96797 0.97178 1.01107 1.20722 0.91688 0.83762 0.95952 1.44234 1.25582 1.05791 1.54684 1.18963 0.99329 0.91296 1.22222 0.92210 1.25213 1.01503 0.97128 1.01879 1.70192 1.35385 1.12034 1.42490 0.85484 0.79990 0.77876 0.78098 1.21522 1.22584 1.20642 1.21987 0.88668 0.96026 0.93683 0.91707 0.91450 0.91439 0.90782 0.92320 0.88213 0.88870 0.79224 0.78061 0.84145 0.90991 0.85792 0.85269 0.90440 0.86757 0.89688 0.91212 0.97066 0.99825 0.95811 0.95884 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.85 71.98 0.71 -0.65 16 2 C -0.15 -2.19 5.17 30.59 0.16 -2.03 16 3 C 0.08 1.56 4.83 86.38 0.42 1.97 16 4 N -0.60 -18.15 2.60 -793.16 -2.06 -20.21 16 5 C 0.49 19.52 6.99 86.88 0.61 20.13 16 6 O -0.45 -23.57 8.65 -3.76 -0.03 -23.60 16 7 C -0.08 -2.89 5.56 -19.88 -0.11 -3.00 16 8 C -0.17 -4.15 7.58 22.63 0.17 -3.98 16 9 C 0.10 2.18 11.17 84.67 0.95 3.13 16 10 N -0.48 -13.31 10.25 -184.04 -1.89 -15.20 16 11 C 0.15 4.53 6.46 42.55 0.27 4.81 16 12 C -0.11 -2.87 6.21 -11.54 -0.07 -2.94 16 13 C -0.18 -4.88 9.80 30.62 0.30 -4.58 16 14 C -0.15 -3.68 10.24 30.62 0.31 -3.37 16 15 C -0.14 -5.15 8.93 22.63 0.20 -4.95 16 16 C 0.15 4.70 3.62 46.39 0.17 4.87 16 17 H 0.14 2.97 8.01 -2.39 -0.02 2.95 16 18 C -0.14 -5.25 6.52 31.78 0.21 -5.04 16 19 C 0.20 10.73 4.21 86.73 0.37 11.10 16 20 N -0.58 -31.19 1.73 -691.97 -1.20 -32.39 16 21 C -0.19 -11.38 8.76 84.03 0.74 -10.64 16 22 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 23 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 24 N -0.95 -62.23 10.31 21.65 0.22 -62.01 16 25 Si 0.95 50.42 29.55 68.60 2.03 52.45 16 26 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 27 H -0.30 -15.92 7.11 99.48 0.71 -15.22 16 28 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 29 C 0.12 5.12 6.19 86.86 0.54 5.66 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.49 7.97 -2.39 -0.02 0.47 16 32 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 34 H 0.06 1.04 6.82 -2.38 -0.02 1.02 16 35 H 0.10 1.87 4.26 -2.39 -0.01 1.86 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.19 3.52 2.30 -2.91 -0.01 3.51 16 38 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.07 2.45 6.37 -2.39 -0.02 2.43 16 41 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 42 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.11 4.85 6.10 -2.91 -0.02 4.84 16 45 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.01 0.69 5.82 -2.39 -0.01 0.68 16 48 H -0.02 -0.99 7.51 -2.39 -0.02 -1.00 16 49 H 0.23 15.10 8.31 -92.70 -0.77 14.33 16 50 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -83.10 388.99 4.40 -78.70 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.93 Total: 15.39 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 6.40 Total: 6.87 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -4.92 Total: -129.80 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.03 Total: -23.60 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.03 Total: 52.45 kcal Total: -83.10 4.40 -78.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567684415.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.069 kcal (2) G-P(sol) polarization free energy of solvation -83.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds