Wall clock time and date at job start Wed Apr 1 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46828 * 2 1 4 4 H 1.08990 * 109.47432 * 55.00130 * 3 2 1 5 5 F 1.39904 * 109.47200 * 294.99588 * 3 2 1 6 6 C 1.50704 * 109.46952 * 175.00330 * 3 2 1 7 7 O 1.21277 * 120.00512 * 43.87757 * 6 3 2 8 8 N 1.34786 * 119.99416 * 223.87844 * 6 3 2 9 9 C 1.46920 * 120.63275 * 354.11465 * 8 6 3 10 10 C 1.53191 * 108.77720 * 233.58530 * 9 8 6 11 11 C 1.53039 * 109.34263 * 305.35285 * 10 9 8 12 12 C 1.53114 * 109.49986 * 61.34189 * 11 10 9 13 13 C 1.46923 * 120.62629 * 174.09588 * 8 6 3 14 14 H 1.09000 * 109.58622 * 246.34436 * 13 8 6 15 15 C 1.53003 * 109.59124 * 6.62370 * 13 8 6 16 16 N 1.46501 * 109.47174 * 292.88063 * 15 13 8 17 17 C 1.34773 * 120.00309 * 185.83799 * 16 15 13 18 18 O 1.21284 * 119.99560 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00325 * 179.97438 * 17 16 15 20 20 C 1.53004 * 109.47122 * 179.97438 * 19 17 16 21 21 N 1.46498 * 109.46605 * 180.02562 * 20 19 17 22 22 C 1.36941 * 119.99535 * 180.02562 * 21 20 19 23 23 H 1.08000 * 120.00273 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99949 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99596 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00097 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47574 * 89.99566 * 26 24 22 28 28 H 1.48499 * 109.47314 * 209.99825 * 26 24 22 29 29 H 1.48501 * 109.47150 * 329.99655 * 26 24 22 30 30 H 1.09000 * 109.47577 * 299.99598 * 1 2 3 31 31 H 1.09003 * 109.47425 * 60.00290 * 1 2 3 32 32 H 1.09004 * 109.46947 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47577 * 240.00402 * 2 1 3 34 34 H 1.08994 * 109.47421 * 119.99977 * 2 1 3 35 35 H 1.09001 * 109.58675 * 113.80130 * 9 8 6 36 36 H 1.08997 * 109.70568 * 353.44957 * 9 8 6 37 37 H 1.09003 * 109.49280 * 65.31693 * 10 9 8 38 38 H 1.09003 * 109.49728 * 185.38209 * 10 9 8 39 39 H 1.08994 * 109.46259 * 181.39969 * 11 10 9 40 40 H 1.08997 * 109.45928 * 301.36436 * 11 10 9 41 41 H 1.09006 * 109.48303 * 178.69994 * 12 11 10 42 42 H 1.08997 * 109.48391 * 58.62364 * 12 11 10 43 43 H 1.08999 * 109.46862 * 52.87443 * 15 13 8 44 44 H 1.08999 * 109.47710 * 172.87551 * 15 13 8 45 45 H 0.97009 * 119.99738 * 5.83461 * 16 15 13 46 46 H 1.08998 * 109.46890 * 300.00103 * 19 17 16 47 47 H 1.09008 * 109.46750 * 59.99742 * 19 17 16 48 48 H 1.08999 * 109.47054 * 299.99963 * 20 19 17 49 49 H 1.08995 * 109.46969 * 60.00568 * 20 19 17 50 50 H 0.96999 * 120.00774 * 0.02562 * 21 20 19 51 51 H 0.97000 * 119.99601 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 9 1.6698 2.0680 -1.1955 6 6 3.5418 1.4444 0.1238 7 8 4.2051 0.6673 -0.5296 8 7 4.1479 2.3098 0.9607 9 6 3.3716 3.3418 1.6614 10 6 4.0067 4.7084 1.3861 11 6 5.4871 4.6663 1.7717 12 6 6.2075 3.6175 0.9199 13 6 5.5974 2.2386 1.1900 14 1 5.7901 1.9472 2.2225 15 6 6.2168 1.2093 0.2425 16 7 5.7472 -0.1308 0.6028 17 6 6.2534 -1.2128 -0.0212 18 8 7.0975 -1.0769 -0.8815 19 6 5.7708 -2.5914 0.3498 20 6 6.4995 -3.6332 -0.5014 21 7 6.0298 -4.9732 -0.1410 22 6 6.5441 -6.0725 -0.7753 23 1 7.2963 -5.9516 -1.5408 24 6 6.0987 -7.3423 -0.4342 25 7 5.1824 -7.4895 0.4991 26 14 6.8008 -8.8418 -1.2988 27 1 7.9903 -9.3300 -0.5557 28 1 5.7729 -9.9125 -1.3460 29 1 7.1975 -8.4752 -2.6820 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.3829 3.1429 2.7330 36 1 2.3434 3.3371 1.2997 37 1 3.9135 4.9460 0.3264 38 1 3.4986 5.4712 1.9761 39 1 5.9351 5.6449 1.6000 40 1 5.5805 4.4042 2.8256 41 1 7.2664 3.6039 1.1786 42 1 6.0936 3.8656 -0.1353 43 1 5.9210 1.4345 -0.7822 44 1 7.3030 1.2477 0.3239 45 1 5.0718 -0.2394 1.2907 46 1 5.9750 -2.7761 1.4045 47 1 4.6980 -2.6614 0.1698 48 1 6.2949 -3.4482 -1.5559 49 1 7.5722 -3.5633 -0.3217 50 1 5.3545 -5.0818 0.5467 51 1 4.8714 -8.3768 0.7377 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571667180.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:12 Heat of formation + Delta-G solvation = -84.791708 kcal Electronic energy + Delta-G solvation = -31649.030926 eV Core-core repulsion = 27306.194129 eV Total energy + Delta-G solvation = -4342.836798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.19135 -41.19414 -38.96300 -37.88775 -35.21949 -34.63410 -34.02046 -33.40181 -32.09302 -31.57565 -29.05131 -28.24228 -26.76092 -25.07931 -23.89903 -23.27357 -22.01753 -21.41125 -21.12427 -20.09553 -19.54714 -18.08096 -17.15011 -17.08704 -16.32484 -16.26345 -16.04799 -15.68591 -15.61988 -15.17489 -14.90823 -14.71924 -14.43130 -14.26034 -14.03750 -13.83360 -13.56470 -13.38568 -13.22130 -13.09598 -12.94929 -12.74486 -12.49109 -12.43172 -12.37035 -12.03044 -11.74139 -11.56619 -11.39685 -11.30088 -11.19371 -10.97500 -10.93684 -10.91269 -10.68438 -10.61511 -10.00927 -9.63045 -9.53343 -9.29674 -9.19512 -8.76988 -8.40211 -6.81381 -5.67660 -2.95144 2.06626 2.32085 3.20583 3.46287 3.51250 3.55917 3.58924 3.74491 4.03072 4.10523 4.23595 4.29195 4.35903 4.51923 4.55709 4.66384 4.69778 4.70525 4.88695 4.97032 5.03030 5.10596 5.19176 5.23969 5.31066 5.33200 5.36007 5.48839 5.51184 5.56769 5.64640 5.65573 5.72829 5.76788 5.81084 5.84842 5.89697 5.93206 6.15095 6.26275 6.38956 6.71572 6.83428 7.02757 7.07842 7.69656 7.81115 7.82092 8.51837 8.70600 9.62840 10.20635 10.56362 11.55848 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.002541 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.682503 B =11017.791926 C =12438.078878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.142 4.142 3 C 0.079 3.921 4 H 0.099 0.901 5 F -0.191 7.191 6 C 0.474 3.526 7 O -0.474 6.474 8 N -0.609 5.609 9 C 0.103 3.897 10 C -0.137 4.137 11 C -0.119 4.119 12 C -0.129 4.129 13 C 0.135 3.865 14 H 0.082 0.918 15 C 0.132 3.868 16 N -0.706 5.706 17 C 0.524 3.476 18 O -0.546 6.546 19 C -0.144 4.144 20 C 0.170 3.830 21 N -0.736 5.736 22 C -0.232 4.232 23 H 0.071 0.929 24 C -0.018 4.018 25 N -0.938 5.938 26 Si 0.908 3.092 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.390 0.610 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.027 0.973 49 H 0.026 0.974 50 H 0.382 0.618 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.882 31.323 8.181 33.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C 0.039 3.961 4 H 0.116 0.884 5 F -0.172 7.172 6 C 0.258 3.742 7 O -0.345 6.345 8 N -0.346 5.346 9 C -0.020 4.020 10 C -0.175 4.175 11 C -0.156 4.156 12 C -0.168 4.168 13 C 0.032 3.968 14 H 0.100 0.900 15 C 0.008 3.992 16 N -0.358 5.358 17 C 0.311 3.689 18 O -0.423 6.423 19 C -0.184 4.184 20 C 0.042 3.958 21 N -0.380 5.380 22 C -0.363 4.363 23 H 0.089 0.911 24 C -0.213 4.213 25 N -0.587 5.587 26 Si 0.739 3.261 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.223 0.777 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.045 0.955 49 H 0.044 0.956 50 H 0.215 0.785 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.807 30.890 7.013 32.624 hybrid contribution -0.395 -0.708 0.192 0.833 sum -8.202 30.182 7.205 32.096 Atomic orbital electron populations 1.21762 0.94101 1.03000 1.02138 1.22006 0.97369 0.93189 1.05475 1.21817 0.92275 0.96537 0.85421 0.88362 1.92886 1.92068 1.83869 1.48367 1.21069 0.90373 0.81320 0.81389 1.91022 1.63886 1.38185 1.41439 1.48171 1.08026 1.32753 1.45606 1.21873 0.95443 0.87339 0.97333 1.21931 0.96445 0.96395 1.02699 1.21517 0.94941 0.99275 0.99889 1.21916 1.00180 0.93274 1.01403 1.21603 0.79105 0.96141 0.99922 0.89995 1.21377 0.97294 0.81069 0.99447 1.45862 1.43236 1.05546 1.41132 1.20607 0.81037 0.86259 0.80957 1.90656 1.32834 1.87001 1.31773 1.21776 1.02433 0.91828 1.02378 1.20350 0.95846 0.83817 0.95796 1.42366 1.49050 1.00052 1.46531 1.19279 1.16986 0.85226 1.14818 0.91075 1.24729 0.99609 0.97435 0.99560 1.69663 1.33250 1.21840 1.33975 0.86157 0.77935 0.82897 0.79080 1.21780 1.21834 1.20732 0.92564 0.92045 0.91355 0.89103 0.89673 0.90715 0.89559 0.91179 0.90370 0.91200 0.91498 0.90063 0.90903 0.89824 0.91637 0.77673 0.89477 0.89266 0.95488 0.95574 0.78502 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.83 37.15 0.37 -0.74 16 2 C -0.14 -1.24 5.40 -26.73 -0.14 -1.39 16 3 C 0.08 0.65 3.18 -27.88 -0.09 0.56 16 4 H 0.10 0.48 5.73 -51.93 -0.30 0.19 16 5 F -0.19 -2.04 16.75 2.25 0.04 -2.00 16 6 C 0.47 4.67 6.32 -10.98 -0.07 4.60 16 7 O -0.47 -6.58 10.23 5.56 0.06 -6.53 16 8 N -0.61 -4.33 2.97 -165.23 -0.49 -4.82 16 9 C 0.10 0.42 6.17 -3.71 -0.02 0.39 16 10 C -0.14 -0.51 6.08 -26.61 -0.16 -0.67 16 11 C -0.12 -0.47 5.89 -26.65 -0.16 -0.63 16 12 C -0.13 -0.75 5.37 -26.58 -0.14 -0.90 16 13 C 0.14 1.01 2.95 -67.60 -0.20 0.81 16 14 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 15 C 0.13 1.55 4.29 -4.04 -0.02 1.53 16 16 N -0.71 -9.41 3.13 -60.29 -0.19 -9.59 16 17 C 0.52 9.35 7.50 -10.99 -0.08 9.27 16 18 O -0.55 -11.92 15.97 5.55 0.09 -11.83 16 19 C -0.14 -2.62 5.81 -27.88 -0.16 -2.78 16 20 C 0.17 3.98 5.55 -4.04 -0.02 3.96 16 21 N -0.74 -20.11 5.60 -59.91 -0.34 -20.45 16 22 C -0.23 -6.95 9.99 -15.06 -0.15 -7.10 16 23 H 0.07 2.10 7.83 -52.49 -0.41 1.69 16 24 C -0.02 -0.55 5.50 -17.43 -0.10 -0.64 16 25 N -0.94 -29.27 13.06 55.49 0.72 -28.54 16 26 Si 0.91 23.44 29.55 -169.99 -5.02 18.42 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.47 7.94 -51.93 -0.41 0.06 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 1.03 8.04 -51.93 -0.42 0.61 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.09 0.28 5.46 -51.93 -0.28 -0.01 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 1.22 6.49 -51.93 -0.34 0.88 16 44 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 45 H 0.39 4.35 7.63 -40.82 -0.31 4.04 16 46 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 47 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 48 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 49 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 50 H 0.38 10.58 7.67 -40.82 -0.31 10.27 16 51 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -37.45 403.68 -8.88 -46.33 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -8.68 Total: 6.67 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -1.15 Total: 6.26 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -0.29 Total: -63.40 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.15 Total: -18.36 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.42 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.45 -8.88 -46.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571667180.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.466 kcal (2) G-P(sol) polarization free energy of solvation -37.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds