Wall clock time and date at job start Wed Apr 1 2020 01:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 C 1.52999 * 109.47203 * 119.99917 * 2 1 3 5 5 H 1.08999 * 109.47180 * 185.00332 * 4 2 1 6 6 F 1.39911 * 109.46903 * 305.00130 * 4 2 1 7 7 C 1.50695 * 109.47387 * 64.99936 * 4 2 1 8 8 O 1.21284 * 119.99926 * 315.00484 * 7 4 2 9 9 N 1.34769 * 120.00471 * 134.99924 * 7 4 2 10 10 C 1.46500 * 120.00455 * 180.02562 * 9 7 4 11 11 C 1.53005 * 109.47229 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.50075 * 54.92672 * 11 10 9 13 13 C 1.53110 * 109.50564 * 294.80604 * 11 10 9 14 14 C 1.53113 * 109.16383 * 182.40058 * 13 11 10 15 15 C 1.53046 * 109.27357 * 57.65360 * 14 13 11 16 16 N 1.46848 * 109.52488 * 300.82044 * 15 14 13 17 17 C 1.46903 * 110.99986 * 185.84050 * 16 15 14 18 18 C 1.50694 * 109.46757 * 169.43693 * 17 16 15 19 19 O 1.21293 * 120.00526 * 353.77327 * 18 17 16 20 20 N 1.34778 * 119.99955 * 173.78505 * 18 17 16 21 21 C 1.37089 * 120.00378 * 179.97438 * 20 18 17 22 22 H 1.08007 * 120.00083 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00445 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99528 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00269 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47159 * 90.00235 * 25 23 21 27 27 H 1.48501 * 109.47159 * 210.00311 * 25 23 21 28 28 H 1.48499 * 109.47189 * 330.00296 * 25 23 21 29 29 C 1.46843 * 111.19395 * 61.74213 * 16 15 14 30 30 H 1.08998 * 109.47117 * 300.00174 * 1 2 3 31 31 H 1.09000 * 109.47189 * 60.00341 * 1 2 3 32 32 H 1.09004 * 109.47292 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47117 * 239.99826 * 2 1 3 34 34 H 1.08998 * 109.47340 * 59.99963 * 3 2 1 35 35 H 1.08999 * 109.46968 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.47019 * 299.99451 * 3 2 1 37 37 H 0.97006 * 119.99364 * 0.02562 * 9 7 4 38 38 H 1.09003 * 109.47092 * 60.00577 * 10 9 7 39 39 H 1.08998 * 109.46804 * 300.00174 * 10 9 7 40 40 H 1.08995 * 109.52343 * 302.30860 * 13 11 10 41 41 H 1.09005 * 109.52536 * 62.43219 * 13 11 10 42 42 H 1.08998 * 109.51072 * 177.59144 * 14 13 11 43 43 H 1.09001 * 109.50563 * 297.72000 * 14 13 11 44 44 H 1.09000 * 109.45954 * 180.80575 * 15 14 13 45 45 H 1.08995 * 109.46335 * 60.84067 * 15 14 13 46 46 H 1.08995 * 109.46888 * 289.43533 * 17 16 15 47 47 H 1.08997 * 109.46725 * 49.43247 * 17 16 15 48 48 H 0.97004 * 119.99402 * 359.97438 * 20 18 17 49 49 H 0.97001 * 119.99835 * 179.97438 * 24 23 21 50 50 H 1.08997 * 109.46503 * 58.27683 * 29 16 15 51 51 H 1.09001 * 109.45889 * 178.24012 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6443 1.2952 6 9 1.4821 -0.1314 2.3887 7 6 1.6414 -2.1732 1.1890 8 8 0.5143 -2.4796 0.8622 9 7 2.5372 -3.1315 1.4981 10 6 2.1499 -4.5431 1.4390 11 6 3.3427 -5.4163 1.8334 12 1 3.7127 -5.1069 2.8110 13 6 4.4553 -5.2624 0.7928 14 6 5.6205 -6.1843 1.1626 15 6 5.1173 -7.6275 1.2416 16 7 4.0551 -7.7225 2.2511 17 6 3.6439 -9.1182 2.4529 18 6 2.7509 -9.2087 3.6635 19 8 2.5740 -8.2323 4.3610 20 7 2.1489 -10.3746 3.9712 21 6 1.3370 -10.4571 5.0727 22 1 1.1794 -9.5877 5.6937 23 6 0.7159 -11.6591 5.3897 24 7 0.9074 -12.7168 4.6338 25 14 -0.3909 -11.7712 6.8902 26 1 -1.7854 -11.4391 6.5025 27 1 -0.3445 -13.1509 7.4375 28 1 0.0772 -10.8129 7.9234 29 6 2.9057 -6.8817 1.8930 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 3.4386 -2.8864 1.7597 38 1 1.8376 -4.7920 0.4247 39 1 1.3243 -4.7224 2.1277 40 1 4.0737 -5.5344 -0.1913 41 1 4.7988 -4.2280 0.7770 42 1 6.3980 -6.1112 0.4023 43 1 6.0269 -5.8873 2.1295 44 1 5.9415 -8.2848 1.5188 45 1 4.7237 -7.9286 0.2708 46 1 3.1016 -9.4679 1.5745 47 1 4.5269 -9.7387 2.6055 48 1 2.2902 -11.1554 3.4132 49 1 0.4741 -13.5560 4.8552 50 1 2.5224 -7.1862 0.9191 51 1 2.1235 -6.9972 2.6432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661732990.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:40 Heat of formation + Delta-G solvation = -134.059807 kcal Electronic energy + Delta-G solvation = -30500.674604 eV Core-core repulsion = 26155.701382 eV Total energy + Delta-G solvation = -4344.973223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.19471 -40.12137 -39.23247 -37.74743 -35.89267 -35.23732 -33.95491 -32.98789 -31.47178 -31.20077 -28.54497 -27.48962 -27.41426 -25.61966 -24.68351 -22.97090 -21.89702 -21.25878 -20.48069 -19.67807 -19.16608 -17.99330 -17.83194 -17.26112 -16.26601 -16.04428 -15.83634 -15.57437 -15.19396 -14.84952 -14.78060 -14.58044 -14.28354 -14.05056 -13.97309 -13.78274 -13.48082 -13.44773 -13.25543 -13.15562 -12.75108 -12.49601 -12.40043 -12.34239 -12.16268 -11.84068 -11.53319 -11.50032 -11.41240 -11.29979 -11.10145 -11.06199 -11.02115 -10.75625 -10.48074 -10.39105 -10.31017 -10.20527 -9.72461 -9.46313 -9.31978 -8.44016 -7.96997 -7.87161 -6.41035 -3.81635 2.16559 2.69548 3.18663 3.27377 3.33260 3.91245 3.93759 3.99645 4.15742 4.22583 4.25572 4.41374 4.61837 4.70720 4.79159 4.84606 4.97988 5.06816 5.13921 5.15846 5.24333 5.29150 5.34908 5.42663 5.48637 5.51554 5.52124 5.63917 5.65662 5.67394 5.69815 5.74018 5.80140 5.88901 5.91497 5.95944 5.99098 6.08460 6.10051 6.27820 6.34078 6.39141 6.40744 7.11302 7.26283 7.38830 7.56033 7.84407 8.07227 8.62596 9.19087 9.55388 10.07141 10.76700 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.012997 B = 0.002174 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.838558 B =12875.682037 C =14486.233233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.086 3.914 5 H 0.098 0.902 6 F -0.187 7.187 7 C 0.490 3.510 8 O -0.514 6.514 9 N -0.716 5.716 10 C 0.122 3.878 11 C -0.093 4.093 12 H 0.090 0.910 13 C -0.115 4.115 14 C -0.114 4.114 15 C 0.053 3.947 16 N -0.514 5.514 17 C 0.047 3.953 18 C 0.442 3.558 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.065 3.935 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.402 0.598 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.029 0.971 46 H 0.046 0.954 47 H 0.089 0.911 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.026 0.974 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.779 20.599 -13.329 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.128 4.128 3 C -0.207 4.207 4 C 0.047 3.953 5 H 0.115 0.885 6 F -0.168 7.168 7 C 0.273 3.727 8 O -0.389 6.389 9 N -0.368 5.368 10 C -0.001 4.001 11 C -0.112 4.112 12 H 0.108 0.892 13 C -0.153 4.153 14 C -0.152 4.152 15 C -0.075 4.075 16 N -0.238 5.238 17 C -0.084 4.084 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.064 4.064 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.237 0.763 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.064 0.936 47 H 0.108 0.892 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.044 0.956 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.932 20.998 -12.592 25.737 hybrid contribution -0.271 -0.935 -0.168 0.988 sum 7.661 20.062 -12.760 24.980 Atomic orbital electron populations 1.22129 0.93103 1.05450 1.01653 1.21552 0.98771 0.96785 0.95721 1.21862 1.00895 0.94992 1.02904 1.21628 0.99043 0.89722 0.84931 0.88455 1.92882 1.87547 1.84501 1.51852 1.20940 0.85819 0.87856 0.78066 1.90653 1.19666 1.82840 1.45729 1.46099 1.15151 1.06907 1.68641 1.21467 0.97857 0.78508 1.02283 1.21387 0.94224 0.95367 1.00265 0.89209 1.21666 0.95863 0.99224 0.98542 1.21550 0.97155 0.94494 1.01997 1.22123 0.95002 0.97212 0.93159 1.61430 1.09947 1.07838 1.44574 1.21847 0.99636 0.89502 0.97453 1.19751 0.84944 0.84551 0.87988 1.90505 1.65736 1.36536 1.53241 1.41883 1.41967 1.10205 1.26108 1.19688 1.21998 0.97569 1.03470 0.87925 1.25260 0.98579 0.94972 0.99184 1.69612 1.44381 1.01407 1.38951 0.85866 0.79946 0.77444 0.81093 1.20422 1.20951 1.19412 1.22060 0.93864 0.90691 0.99755 0.92403 0.92756 0.88762 0.89408 0.91855 0.92416 0.91715 0.76338 0.91221 0.90553 0.92139 0.92258 0.91705 0.90902 0.90809 0.95297 0.93590 0.89239 0.77531 0.91905 0.95614 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 8.71 37.16 0.32 -1.27 16 2 C -0.11 -0.84 2.75 -90.62 -0.25 -1.09 16 3 C -0.15 -0.89 9.11 37.16 0.34 -0.55 16 4 C 0.09 0.73 3.46 -27.89 -0.10 0.63 16 5 H 0.10 0.49 7.99 -51.93 -0.42 0.08 16 6 F -0.19 -2.05 16.03 2.25 0.04 -2.02 16 7 C 0.49 5.41 7.17 -10.99 -0.08 5.33 16 8 O -0.51 -7.56 13.80 5.55 0.08 -7.48 16 9 N -0.72 -6.77 5.31 -60.29 -0.32 -7.09 16 10 C 0.12 1.41 5.07 -4.04 -0.02 1.39 16 11 C -0.09 -1.09 2.39 -90.54 -0.22 -1.31 16 12 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 13 C -0.12 -1.05 5.13 -26.62 -0.14 -1.19 16 14 C -0.11 -1.10 6.09 -26.65 -0.16 -1.27 16 15 C 0.05 0.63 5.46 -3.83 -0.02 0.61 16 16 N -0.51 -8.11 4.35 -236.12 -1.03 -9.14 16 17 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 18 C 0.44 10.27 7.31 -10.99 -0.08 10.19 16 19 O -0.58 -15.24 14.28 5.55 0.08 -15.16 16 20 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 21 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 22 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 25 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 C 0.06 0.98 4.40 -3.84 -0.02 0.97 16 30 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.14 5.25 -51.93 -0.27 0.87 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.42 7.93 -51.93 -0.41 0.01 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.40 2.68 7.58 -40.82 -0.31 2.37 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.42 7.27 -51.93 -0.38 0.04 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.83 8.01 -51.93 -0.42 0.42 16 45 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 47 H 0.09 1.41 7.98 -51.93 -0.41 1.00 16 48 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 49 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.10 1.92 6.05 -51.93 -0.31 1.60 16 LS Contribution 405.57 15.07 6.11 6.11 Total: -1.00 -32.82 405.57 -8.74 -41.57 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -8.66 Total: 9.83 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -0.68 Total: 5.31 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.68 Total: -54.31 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.16 Total: -22.64 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.82 -8.74 -41.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661732990.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.495 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds