Wall clock time and date at job start Wed Apr 1 2020 01:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47268 * 2 1 4 4 C 1.53002 * 109.47211 * 119.99727 * 2 1 3 5 5 H 1.08995 * 109.47275 * 305.32258 * 4 2 1 6 6 F 1.39899 * 109.47370 * 185.31833 * 4 2 1 7 7 C 1.50702 * 109.46806 * 65.32060 * 4 2 1 8 8 O 1.21277 * 120.00372 * 65.76752 * 7 4 2 9 9 N 1.34782 * 119.99975 * 245.76117 * 7 4 2 10 10 C 1.46492 * 120.00036 * 180.02562 * 9 7 4 11 11 C 1.53003 * 109.47061 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.53577 * 304.89635 * 11 10 9 13 13 C 1.53111 * 109.50628 * 64.99544 * 11 10 9 14 14 C 1.53124 * 109.16285 * 177.59724 * 13 11 10 15 15 C 1.53036 * 109.27849 * 302.34665 * 14 13 11 16 16 N 1.46847 * 109.52303 * 59.17370 * 15 14 13 17 17 C 1.46901 * 111.00175 * 174.15806 * 16 15 14 18 18 C 1.50702 * 109.46728 * 66.05275 * 17 16 15 19 19 O 1.21292 * 120.00295 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99654 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99619 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99897 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99609 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99637 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00298 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47261 * 89.99970 * 25 23 21 27 27 H 1.48499 * 109.47454 * 210.00140 * 25 23 21 28 28 H 1.48499 * 109.47044 * 330.00098 * 25 23 21 29 29 C 1.46849 * 111.20490 * 298.26390 * 16 15 14 30 30 H 1.08989 * 109.47188 * 300.00034 * 1 2 3 31 31 H 1.09000 * 109.46861 * 60.00478 * 1 2 3 32 32 H 1.09000 * 109.46701 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47258 * 239.99769 * 2 1 3 34 34 H 1.08998 * 109.47096 * 185.01698 * 3 2 1 35 35 H 1.09000 * 109.46831 * 305.01570 * 3 2 1 36 36 H 1.08995 * 109.47149 * 65.01544 * 3 2 1 37 37 H 0.97001 * 119.99290 * 0.02562 * 9 7 4 38 38 H 1.08997 * 109.47399 * 60.00358 * 10 9 7 39 39 H 1.09005 * 109.47279 * 299.99777 * 10 9 7 40 40 H 1.09009 * 109.52421 * 57.69397 * 13 11 10 41 41 H 1.08996 * 109.52865 * 297.50197 * 13 11 10 42 42 H 1.08995 * 109.50225 * 182.40903 * 14 13 11 43 43 H 1.08993 * 109.53218 * 62.30588 * 14 13 11 44 44 H 1.09003 * 109.46216 * 299.16744 * 15 14 13 45 45 H 1.08995 * 109.46702 * 179.19730 * 15 14 13 46 46 H 1.08998 * 109.47449 * 306.05595 * 17 16 15 47 47 H 1.08997 * 109.47323 * 186.05034 * 17 16 15 48 48 H 0.97000 * 120.00679 * 359.97438 * 20 18 17 49 49 H 0.97004 * 120.00167 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.46442 * 181.75872 * 29 16 15 51 51 H 1.09006 * 109.45502 * 301.72143 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6010 -0.2654 2.1367 6 9 3.4337 -0.6163 1.3121 7 6 1.6481 -2.1750 1.1852 8 8 2.1188 -2.8927 0.3284 9 7 0.7745 -2.6775 2.0801 10 6 0.3940 -4.0908 2.0182 11 6 -0.6022 -4.4002 3.1374 12 1 -0.1746 -4.1091 4.0968 13 6 -1.8984 -3.6212 2.8980 14 6 -2.9107 -3.9824 3.9886 15 6 -3.1502 -5.4938 3.9752 16 7 -1.8807 -6.1939 4.2092 17 6 -2.0942 -7.6414 4.3408 18 6 -2.5744 -8.1998 3.0260 19 8 -2.7246 -7.4643 2.0733 20 7 -2.8381 -9.5163 2.9091 21 6 -3.2755 -10.0243 1.7132 22 1 -3.4091 -9.3694 0.8649 23 6 -3.5468 -11.3818 1.5925 24 7 -3.9655 -11.8687 0.4461 25 14 -3.3163 -12.5143 3.0600 26 1 -4.5810 -12.5838 3.8351 27 1 -2.9520 -13.8731 2.5842 28 1 -2.2325 -11.9865 3.9272 29 6 -0.9085 -5.8996 3.1487 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1263 1.4438 -0.0899 35 1 1.6052 1.9816 -0.8417 36 1 1.7519 1.9297 0.9314 37 1 0.3979 -2.1033 2.7652 38 1 1.2815 -4.7117 2.1394 39 1 -0.0675 -4.3009 1.0532 40 1 -2.3060 -3.8834 1.9215 41 1 -1.6922 -2.5515 2.9323 42 1 -3.8503 -3.4634 3.7993 43 1 -2.5200 -3.6845 4.9615 44 1 -3.5544 -5.7889 3.0068 45 1 -3.8597 -5.7562 4.7599 46 1 -2.8425 -7.8298 5.1106 47 1 -1.1570 -8.1230 4.6194 48 1 -2.7184 -10.1045 3.6711 49 1 -4.1553 -12.8163 0.3619 50 1 0.0100 -6.4566 3.3332 51 1 -1.3234 -6.1928 2.1842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661732992.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:48 Heat of formation + Delta-G solvation = -131.576747 kcal Electronic energy + Delta-G solvation = -30873.103353 eV Core-core repulsion = 26528.237804 eV Total energy + Delta-G solvation = -4344.865549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.17650 -40.13878 -39.48937 -37.71949 -35.97833 -35.37860 -34.06170 -32.88833 -31.75637 -31.36003 -28.51318 -27.57767 -27.44571 -25.56540 -24.59985 -22.78598 -21.91214 -21.28836 -20.57487 -19.68780 -19.46319 -18.28850 -18.10435 -16.97606 -16.34155 -16.06618 -15.73787 -15.58754 -15.13123 -14.99243 -14.84931 -14.62007 -14.51328 -14.23628 -13.86944 -13.75258 -13.45024 -13.32887 -13.19583 -13.12701 -12.78212 -12.65532 -12.57172 -12.26716 -12.22920 -11.91918 -11.84490 -11.58264 -11.51121 -11.40702 -11.27689 -11.05159 -10.72179 -10.66375 -10.60759 -10.35978 -10.23042 -10.06892 -9.94275 -9.56620 -9.35619 -9.29672 -8.24681 -7.53452 -6.38949 -3.90286 2.20242 2.69804 2.97835 3.02056 3.10952 3.60748 3.93882 4.03771 4.11076 4.17389 4.28472 4.36926 4.60590 4.67480 4.75110 4.79308 4.95432 5.01367 5.06320 5.14566 5.20769 5.29252 5.37278 5.38407 5.41917 5.51401 5.54862 5.63073 5.66443 5.72503 5.80087 5.80174 5.81254 5.86013 5.86989 5.94188 5.99276 6.09960 6.13968 6.23855 6.28304 6.51124 6.67774 7.12784 7.23715 7.35184 7.48964 7.84870 8.07316 8.49723 8.86593 9.34280 9.72238 10.73752 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.002110 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.884445 B =13266.775940 C =13780.675358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.147 4.147 4 C 0.087 3.913 5 H 0.098 0.902 6 F -0.188 7.188 7 C 0.490 3.510 8 O -0.519 6.519 9 N -0.718 5.718 10 C 0.122 3.878 11 C -0.090 4.090 12 H 0.078 0.922 13 C -0.113 4.113 14 C -0.111 4.111 15 C 0.039 3.961 16 N -0.512 5.512 17 C 0.039 3.961 18 C 0.414 3.586 19 O -0.576 6.576 20 N -0.583 5.583 21 C -0.308 4.308 22 H 0.119 0.881 23 C 0.042 3.958 24 N -0.877 5.877 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.268 1.268 29 C 0.039 3.961 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.401 0.599 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.371 0.629 49 H 0.274 0.726 50 H 0.065 0.935 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.380 23.199 8.561 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.135 4.135 3 C -0.204 4.204 4 C 0.048 3.952 5 H 0.116 0.884 6 F -0.169 7.169 7 C 0.273 3.727 8 O -0.394 6.394 9 N -0.370 5.370 10 C -0.001 4.001 11 C -0.110 4.110 12 H 0.096 0.904 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.089 4.089 16 N -0.235 5.235 17 C -0.093 4.093 18 C 0.200 3.800 19 O -0.461 6.461 20 N -0.220 5.220 21 C -0.437 4.437 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.517 5.517 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.194 1.194 29 C -0.089 4.089 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.236 0.764 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.204 0.796 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.776 23.124 7.616 25.557 hybrid contribution -0.313 -1.295 0.722 1.515 sum 7.462 21.829 8.338 24.530 Atomic orbital electron populations 1.21844 0.93297 1.02786 1.02948 1.21646 0.97353 0.97345 0.97174 1.21811 1.01930 0.94208 1.02461 1.21626 0.77831 0.93903 1.01868 0.88390 1.92876 1.29545 1.96717 1.97716 1.20904 0.79850 0.89883 0.82023 1.90770 1.52980 1.60343 1.35260 1.46065 1.45595 1.12326 1.33016 1.21467 0.98444 0.80216 0.99986 1.21362 0.94847 0.96981 0.97773 0.90378 1.21621 0.95198 0.98415 0.99874 1.21515 0.98643 0.95921 0.98777 1.22246 0.91185 0.93180 1.02277 1.62395 1.10535 1.05999 1.44541 1.22088 1.02205 0.89022 0.95999 1.21060 0.84915 0.82958 0.91080 1.90429 1.57448 1.57419 1.40807 1.42415 1.59420 1.07561 1.12651 1.19447 1.40954 0.93530 0.89758 0.86344 1.25090 0.97183 0.96862 0.97023 1.69626 1.43847 1.14450 1.23740 0.86657 0.78871 0.81382 0.82426 1.19561 1.20100 1.19383 1.22334 0.95726 0.93305 0.97509 0.91969 0.91249 0.92022 0.88901 0.91783 0.91610 0.92266 0.76447 0.91059 0.90750 0.91475 0.92656 0.91884 0.91827 0.91298 0.91776 0.89225 0.89182 0.79587 0.91510 0.91671 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.01 37.16 0.33 -0.63 16 2 C -0.12 -0.89 2.72 -90.62 -0.25 -1.13 16 3 C -0.15 -0.88 8.94 37.16 0.33 -0.54 16 4 C 0.09 0.75 3.35 -27.88 -0.09 0.65 16 5 H 0.10 0.50 7.93 -51.93 -0.41 0.09 16 6 F -0.19 -2.09 16.44 2.25 0.04 -2.05 16 7 C 0.49 5.62 5.93 -10.98 -0.07 5.56 16 8 O -0.52 -8.43 17.01 5.56 0.09 -8.34 16 9 N -0.72 -6.70 5.31 -60.30 -0.32 -7.02 16 10 C 0.12 1.42 5.07 -4.04 -0.02 1.40 16 11 C -0.09 -1.02 2.39 -90.54 -0.22 -1.23 16 12 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 13 C -0.11 -1.21 5.13 -26.61 -0.14 -1.35 16 14 C -0.11 -1.24 6.09 -26.65 -0.16 -1.40 16 15 C 0.04 0.57 5.10 -3.83 -0.02 0.55 16 16 N -0.51 -7.59 4.86 -236.11 -1.15 -8.74 16 17 C 0.04 0.62 5.86 -4.97 -0.03 0.59 16 18 C 0.41 8.80 7.20 -10.99 -0.08 8.72 16 19 O -0.58 -14.03 11.20 5.55 0.06 -13.97 16 20 N -0.58 -13.38 5.09 -10.96 -0.06 -13.43 16 21 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 22 H 0.12 3.75 7.39 -52.49 -0.39 3.37 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.31 13.96 55.50 0.77 -24.53 16 25 Si 0.88 19.05 27.74 -169.99 -4.71 14.33 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.27 -5.28 6.52 56.52 0.37 -4.92 16 29 C 0.04 0.59 4.26 -3.83 -0.02 0.57 16 30 H 0.06 0.29 8.14 -51.94 -0.42 -0.13 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.49 7.39 -51.93 -0.38 0.10 16 33 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.06 0.43 7.84 -51.93 -0.41 0.02 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.40 2.49 7.52 -40.82 -0.31 2.19 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 41 H 0.05 0.44 7.25 -51.93 -0.38 0.07 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.25 6.00 -51.93 -0.31 0.94 16 45 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 46 H 0.09 1.25 8.06 -51.93 -0.42 0.83 16 47 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 48 H 0.37 7.52 5.76 -40.82 -0.24 7.29 16 49 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 51 H 0.09 1.69 5.36 -51.93 -0.28 1.41 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -33.38 401.66 -8.48 -41.86 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -8.60 Total: 11.69 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -0.67 Total: 4.14 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.75 Total: -53.72 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.16 Total: -22.31 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.38 -8.48 -41.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661732992.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.721 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds