Wall clock time and date at job start Wed Apr 1 2020 01:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47268 * 2 1 4 4 C 1.53002 * 109.47211 * 119.99727 * 2 1 3 5 5 H 1.08995 * 109.47275 * 305.32258 * 4 2 1 6 6 F 1.39899 * 109.47370 * 185.31833 * 4 2 1 7 7 C 1.50702 * 109.46806 * 65.32060 * 4 2 1 8 8 O 1.21277 * 120.00372 * 65.76752 * 7 4 2 9 9 N 1.34782 * 119.99975 * 245.76117 * 7 4 2 10 10 C 1.46492 * 120.00036 * 180.02562 * 9 7 4 11 11 C 1.53003 * 109.47061 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.53577 * 304.89635 * 11 10 9 13 13 C 1.53111 * 109.50628 * 64.99544 * 11 10 9 14 14 C 1.53124 * 109.16285 * 177.59724 * 13 11 10 15 15 C 1.53036 * 109.27849 * 302.34665 * 14 13 11 16 16 N 1.46847 * 109.52303 * 59.17370 * 15 14 13 17 17 C 1.46901 * 111.00175 * 174.15806 * 16 15 14 18 18 C 1.50702 * 109.46728 * 66.05275 * 17 16 15 19 19 O 1.21292 * 120.00295 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99654 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99619 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99897 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99609 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99637 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00298 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47261 * 89.99970 * 25 23 21 27 27 H 1.48499 * 109.47454 * 210.00140 * 25 23 21 28 28 H 1.48499 * 109.47044 * 330.00098 * 25 23 21 29 29 C 1.46849 * 111.20490 * 298.26390 * 16 15 14 30 30 H 1.08989 * 109.47188 * 300.00034 * 1 2 3 31 31 H 1.09000 * 109.46861 * 60.00478 * 1 2 3 32 32 H 1.09000 * 109.46701 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47258 * 239.99769 * 2 1 3 34 34 H 1.08998 * 109.47096 * 185.01698 * 3 2 1 35 35 H 1.09000 * 109.46831 * 305.01570 * 3 2 1 36 36 H 1.08995 * 109.47149 * 65.01544 * 3 2 1 37 37 H 0.97001 * 119.99290 * 0.02562 * 9 7 4 38 38 H 1.08997 * 109.47399 * 60.00358 * 10 9 7 39 39 H 1.09005 * 109.47279 * 299.99777 * 10 9 7 40 40 H 1.09009 * 109.52421 * 57.69397 * 13 11 10 41 41 H 1.08996 * 109.52865 * 297.50197 * 13 11 10 42 42 H 1.08995 * 109.50225 * 182.40903 * 14 13 11 43 43 H 1.08993 * 109.53218 * 62.30588 * 14 13 11 44 44 H 1.09003 * 109.46216 * 299.16744 * 15 14 13 45 45 H 1.08995 * 109.46702 * 179.19730 * 15 14 13 46 46 H 1.08998 * 109.47449 * 306.05595 * 17 16 15 47 47 H 1.08997 * 109.47323 * 186.05034 * 17 16 15 48 48 H 0.97000 * 120.00679 * 359.97438 * 20 18 17 49 49 H 0.97004 * 120.00167 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.46442 * 181.75872 * 29 16 15 51 51 H 1.09006 * 109.45502 * 301.72143 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6010 -0.2654 2.1367 6 9 3.4337 -0.6163 1.3121 7 6 1.6481 -2.1750 1.1852 8 8 2.1188 -2.8927 0.3284 9 7 0.7745 -2.6775 2.0801 10 6 0.3940 -4.0908 2.0182 11 6 -0.6022 -4.4002 3.1374 12 1 -0.1746 -4.1091 4.0968 13 6 -1.8984 -3.6212 2.8980 14 6 -2.9107 -3.9824 3.9886 15 6 -3.1502 -5.4938 3.9752 16 7 -1.8807 -6.1939 4.2092 17 6 -2.0942 -7.6414 4.3408 18 6 -2.5744 -8.1998 3.0260 19 8 -2.7246 -7.4643 2.0733 20 7 -2.8381 -9.5163 2.9091 21 6 -3.2755 -10.0243 1.7132 22 1 -3.4091 -9.3694 0.8649 23 6 -3.5468 -11.3818 1.5925 24 7 -3.9655 -11.8687 0.4461 25 14 -3.3163 -12.5143 3.0600 26 1 -4.5810 -12.5838 3.8351 27 1 -2.9520 -13.8731 2.5842 28 1 -2.2325 -11.9865 3.9272 29 6 -0.9085 -5.8996 3.1487 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1263 1.4438 -0.0899 35 1 1.6052 1.9816 -0.8417 36 1 1.7519 1.9297 0.9314 37 1 0.3979 -2.1033 2.7652 38 1 1.2815 -4.7117 2.1394 39 1 -0.0675 -4.3009 1.0532 40 1 -2.3060 -3.8834 1.9215 41 1 -1.6922 -2.5515 2.9323 42 1 -3.8503 -3.4634 3.7993 43 1 -2.5200 -3.6845 4.9615 44 1 -3.5544 -5.7889 3.0068 45 1 -3.8597 -5.7562 4.7599 46 1 -2.8425 -7.8298 5.1106 47 1 -1.1570 -8.1230 4.6194 48 1 -2.7184 -10.1045 3.6711 49 1 -4.1553 -12.8163 0.3619 50 1 0.0100 -6.4566 3.3332 51 1 -1.3234 -6.1928 2.1842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661732992.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:46 Heat of formation + Delta-G solvation = -157.741893 kcal Electronic energy + Delta-G solvation = -30874.237959 eV Core-core repulsion = 26528.237804 eV Total energy + Delta-G solvation = -4346.000155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.95941 -41.29568 -40.75646 -39.12938 -36.66309 -36.53378 -35.86067 -34.07496 -33.74318 -32.38080 -29.39748 -28.90924 -27.97430 -26.54206 -26.34322 -24.00278 -22.88033 -22.22692 -21.36634 -21.28504 -20.78817 -20.07624 -18.95303 -17.85394 -17.74444 -17.15301 -16.99596 -16.65345 -16.42429 -16.12595 -16.02293 -15.75103 -15.51658 -15.35752 -15.22900 -15.07125 -14.71471 -14.56281 -14.36275 -14.01706 -13.71347 -13.68031 -13.44034 -13.39263 -13.24211 -13.03694 -13.03059 -12.96943 -12.50828 -12.44841 -12.15784 -12.06728 -12.04516 -11.93905 -11.65125 -11.60589 -11.44547 -11.32454 -11.24225 -11.00890 -10.89447 -10.27282 -10.24099 -9.01980 -8.45142 -6.05515 1.27926 1.28631 1.32567 1.42078 1.83546 1.89960 2.19959 2.95739 2.97846 3.12058 3.28828 3.44199 3.66595 3.73256 3.76508 3.80146 3.96363 4.14232 4.20218 4.29758 4.31175 4.41280 4.45276 4.48343 4.49823 4.62460 4.63509 4.66985 4.76657 4.79641 4.87343 4.94237 4.97495 5.01384 5.09246 5.12893 5.14406 5.19512 5.25289 5.29683 5.33575 5.34676 5.49896 5.57438 5.89633 6.02508 6.10711 6.33911 6.54672 6.85373 7.01845 7.36198 7.92831 8.72455 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.002110 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.884445 B =13266.775940 C =13780.675358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.143 4.143 4 C 0.089 3.911 5 H 0.147 0.853 6 F -0.203 7.203 7 C 0.486 3.514 8 O -0.577 6.577 9 N -0.697 5.697 10 C 0.130 3.870 11 C -0.074 4.074 12 H 0.107 0.893 13 C -0.112 4.112 14 C -0.103 4.103 15 C 0.035 3.965 16 N -0.495 5.495 17 C 0.045 3.955 18 C 0.415 3.585 19 O -0.611 6.611 20 N -0.589 5.589 21 C -0.327 4.327 22 H 0.052 0.948 23 C -0.018 4.018 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.256 1.256 27 H -0.277 1.277 28 H -0.230 1.230 29 C 0.038 3.962 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.421 0.579 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.021 0.979 45 H 0.077 0.923 46 H 0.122 0.878 47 H 0.118 0.882 48 H 0.389 0.611 49 H 0.279 0.721 50 H 0.067 0.933 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.857 25.305 13.568 29.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.200 4.200 4 C 0.050 3.950 5 H 0.165 0.835 6 F -0.183 7.183 7 C 0.271 3.729 8 O -0.456 6.456 9 N -0.350 5.350 10 C 0.005 3.995 11 C -0.093 4.093 12 H 0.125 0.875 13 C -0.149 4.149 14 C -0.141 4.141 15 C -0.093 4.093 16 N -0.217 5.217 17 C -0.087 4.087 18 C 0.203 3.797 19 O -0.497 6.497 20 N -0.230 5.230 21 C -0.457 4.457 22 H 0.071 0.929 23 C -0.216 4.216 24 N -0.575 5.575 25 Si 0.786 3.214 26 H -0.180 1.180 27 H -0.202 1.202 28 H -0.154 1.154 29 C -0.091 4.091 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.260 0.740 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.039 0.961 45 H 0.096 0.904 46 H 0.140 0.860 47 H 0.136 0.864 48 H 0.225 0.775 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.242 25.296 12.673 29.469 hybrid contribution -0.487 -1.820 -0.959 2.114 sum 7.755 23.476 11.714 27.358 Atomic orbital electron populations 1.21839 0.92121 1.01929 1.04648 1.21645 0.98282 0.98071 0.95547 1.21795 1.01214 0.92944 1.04019 1.21897 0.77092 0.91678 1.04349 0.83531 1.92847 1.31044 1.96585 1.97873 1.21580 0.79156 0.91036 0.81099 1.90747 1.55174 1.62102 1.37608 1.45838 1.44741 1.11475 1.32936 1.21211 0.97858 0.81548 0.98862 1.21230 0.95114 0.94396 0.98587 0.87483 1.21631 0.94529 1.00525 0.98254 1.21505 0.99506 0.93120 0.99960 1.22319 0.91083 0.95830 1.00086 1.62527 1.10466 1.05253 1.43464 1.22313 1.04173 0.89413 0.92801 1.22417 0.82361 0.82105 0.92800 1.90467 1.57858 1.58332 1.43051 1.42267 1.60597 1.08518 1.11633 1.18985 1.43018 0.93509 0.90150 0.92947 1.26173 0.96004 0.98376 1.01072 1.69814 1.45468 1.15221 1.27006 0.85350 0.80469 0.77772 0.77852 1.18013 1.20193 1.15366 1.22273 0.95478 0.96166 0.95139 0.89088 0.90812 0.94061 0.92032 0.92875 0.90756 0.90101 0.73977 0.92287 0.93820 0.94702 0.88804 0.90632 0.89250 0.96064 0.90448 0.86001 0.86397 0.77517 0.91180 0.91441 0.94047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.01 71.98 0.65 -0.98 16 2 C -0.12 -1.65 2.72 -10.79 -0.03 -1.68 16 3 C -0.14 -1.40 8.94 71.98 0.64 -0.76 16 4 C 0.09 1.36 3.35 29.85 0.10 1.46 16 5 H 0.15 0.82 7.93 -2.39 -0.02 0.80 16 6 F -0.20 -4.28 16.44 44.97 0.74 -3.54 16 7 C 0.49 10.98 5.93 87.66 0.52 11.50 16 8 O -0.58 -19.81 17.01 -3.02 -0.05 -19.86 16 9 N -0.70 -11.89 5.31 -463.06 -2.46 -14.35 16 10 C 0.13 3.05 5.07 86.38 0.44 3.49 16 11 C -0.07 -1.55 2.39 -10.74 -0.03 -1.58 16 12 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 13 C -0.11 -2.16 5.13 30.67 0.16 -2.01 16 14 C -0.10 -1.99 6.09 30.65 0.19 -1.80 16 15 C 0.03 0.96 5.10 86.33 0.44 1.40 16 16 N -0.50 -13.68 4.86 -900.93 -4.38 -18.06 16 17 C 0.04 1.31 5.86 85.56 0.50 1.82 16 18 C 0.42 17.99 7.20 87.66 0.63 18.62 16 19 O -0.61 -31.86 11.20 -3.07 -0.03 -31.89 16 20 N -0.59 -27.33 5.09 -306.98 -1.56 -28.89 16 21 C -0.33 -19.10 10.16 84.04 0.85 -18.24 16 22 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 23 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 24 N -0.93 -56.73 13.96 21.66 0.30 -56.43 16 25 Si 0.97 38.83 27.74 68.60 1.90 40.73 16 26 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 27 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 29 C 0.04 1.13 4.26 86.32 0.37 1.50 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 0.62 7.39 -2.39 -0.02 0.61 16 33 H 0.06 1.25 8.08 -2.38 -0.02 1.23 16 34 H 0.05 0.65 7.84 -2.39 -0.02 0.63 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.46 8.14 -2.39 -0.02 0.45 16 37 H 0.42 3.57 7.52 -92.71 -0.70 2.88 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.09 1.11 7.25 -2.39 -0.02 1.09 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.02 0.80 6.00 -2.39 -0.01 0.78 16 45 H 0.08 1.92 8.06 -2.39 -0.02 1.90 16 46 H 0.12 2.88 8.06 -2.39 -0.02 2.87 16 47 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 48 H 0.39 14.97 5.76 -92.71 -0.53 14.44 16 49 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 50 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 51 H 0.04 1.67 5.36 -2.38 -0.01 1.66 16 Total: -1.00 -84.35 401.66 0.01 -84.33 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -0.35 Total: 35.74 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 5.90 Total: 12.22 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -8.09 Total: -117.72 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.09 Total: -51.75 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.74 Total: -3.54 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.90 Total: 40.73 kcal Total: -84.35 0.01 -84.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661732992.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.407 kcal (2) G-P(sol) polarization free energy of solvation -84.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds