Wall clock time and date at job start Wed Apr 1 2020 02:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 N 1.46510 * 109.47214 * 180.02562 * 3 2 1 5 5 C 1.36929 * 119.99856 * 264.11847 * 4 3 2 6 6 H 1.07995 * 120.00331 * 188.01558 * 5 4 3 7 7 C 1.38815 * 120.00147 * 8.00978 * 5 4 3 8 8 N 1.31624 * 120.00074 * 25.65528 * 7 5 4 9 9 Si 1.86802 * 120.00142 * 205.64711 * 7 5 4 10 10 H 1.48501 * 109.46627 * 84.99133 * 9 7 5 11 11 H 1.48503 * 109.47246 * 204.98802 * 9 7 5 12 12 H 1.48496 * 109.47333 * 324.99169 * 9 7 5 13 13 C 1.46498 * 119.99769 * 84.11522 * 4 3 2 14 14 C 1.53000 * 109.46960 * 269.99756 * 13 4 3 15 15 N 1.46507 * 109.46828 * 180.02562 * 14 13 4 16 16 C 1.34781 * 119.99858 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99992 * 0.28113 * 16 15 14 18 18 C 1.50699 * 119.99983 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.46986 * 180.02562 * 18 16 15 20 20 N 1.46497 * 109.47050 * 179.97438 * 19 18 16 21 21 C 1.36834 * 125.06099 * 264.69941 * 20 19 18 22 22 C 1.34239 * 109.92590 * 179.81579 * 21 20 19 23 23 C 1.46489 * 107.00035 * 0.42727 * 22 21 20 24 24 C 1.39632 * 134.03062 * 179.76369 * 23 22 21 25 25 C 1.36622 * 119.76168 * 179.97438 * 24 23 22 26 26 C 1.38827 * 120.52920 * 359.97438 * 25 24 23 27 27 C 1.37744 * 120.66833 * 359.97438 * 26 25 24 28 28 C 1.37689 * 125.06399 * 84.99614 * 20 19 18 29 29 H 1.08994 * 109.47465 * 60.00050 * 1 2 3 30 30 H 1.09000 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46944 * 299.99382 * 1 2 3 32 32 H 1.09009 * 109.47340 * 240.00031 * 2 1 3 33 33 H 1.09004 * 109.47776 * 120.00382 * 2 1 3 34 34 H 1.08997 * 109.47048 * 60.00440 * 3 2 1 35 35 H 1.09000 * 109.47009 * 299.99877 * 3 2 1 36 36 H 0.96999 * 120.00351 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.46698 * 150.00335 * 13 4 3 38 38 H 1.08997 * 109.47275 * 29.99970 * 13 4 3 39 39 H 1.09000 * 109.46943 * 60.00728 * 14 13 4 40 40 H 1.08997 * 109.47301 * 300.00198 * 14 13 4 41 41 H 0.96992 * 119.99857 * 0.02562 * 15 14 13 42 42 H 1.08997 * 109.46942 * 299.99895 * 18 16 15 43 43 H 1.08992 * 109.47195 * 59.99917 * 18 16 15 44 44 H 1.08997 * 109.46964 * 299.99600 * 19 18 16 45 45 H 1.08992 * 109.47451 * 59.99792 * 19 18 16 46 46 H 1.07996 * 125.03806 * 359.97210 * 21 20 19 47 47 H 1.08002 * 126.50002 * 180.14521 * 22 21 20 48 48 H 1.07996 * 120.11675 * 0.02562 * 24 23 22 49 49 H 1.07999 * 119.73400 * 180.02562 * 25 24 23 50 50 H 1.07999 * 119.66852 * 180.02562 * 26 25 24 51 51 H 1.07999 * 120.11627 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5639 1.1787 6 1 5.2622 1.6941 1.1696 7 6 3.5067 1.5196 2.3862 8 7 2.3566 0.8850 2.4686 9 14 4.2195 2.3606 3.8942 10 1 3.8326 3.7944 3.8905 11 1 3.6924 1.7089 5.1200 12 1 5.6999 2.2474 3.8709 13 6 4.2369 1.3126 -1.2630 14 6 4.4918 -0.1675 -1.5547 15 7 5.2243 -0.2974 -2.8169 16 6 5.5608 -1.5182 -3.2783 17 8 5.2527 -2.5096 -2.6512 18 6 6.3147 -1.6518 -4.5762 19 6 6.5684 -3.1320 -4.8687 20 7 7.3008 -3.2618 -6.1308 21 6 6.7278 -3.4904 -7.3521 22 6 7.6776 -3.5516 -8.2988 23 6 8.9647 -3.3556 -7.6274 24 6 10.2908 -3.3188 -8.0630 25 6 11.2954 -3.1100 -7.1609 26 6 11.0085 -2.9335 -5.8142 27 6 9.7074 -2.9651 -5.3630 28 6 8.6687 -3.1779 -6.2638 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.8792 0.8537 3.3124 37 1 5.1894 1.8371 -1.1863 38 1 3.6475 1.7460 -2.0710 39 1 3.5394 -0.6920 -1.6314 40 1 5.0813 -0.6009 -0.7467 41 1 5.4671 0.4953 -3.3204 42 1 5.7262 -1.2178 -5.3845 43 1 7.2673 -1.1279 -4.4986 44 1 7.1567 -3.5663 -4.0604 45 1 5.6156 -3.6555 -4.9464 46 1 5.6683 -3.6023 -7.5288 47 1 7.5225 -3.7186 -9.3545 48 1 10.5215 -3.4541 -9.1094 49 1 12.3209 -3.0812 -7.4984 50 1 11.8134 -2.7690 -5.1132 51 1 9.4943 -2.8263 -4.3134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663692492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:49 Heat of formation + Delta-G solvation = 44.086751 kcal Electronic energy + Delta-G solvation = -28906.524244 eV Core-core repulsion = 25000.045261 eV Total energy + Delta-G solvation = -3906.478983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.54392 -39.56393 -37.31069 -36.63843 -34.51993 -33.96362 -31.98578 -31.60143 -31.17418 -29.49416 -28.94497 -27.72405 -25.54786 -24.68917 -23.20380 -22.69560 -21.68442 -20.86640 -20.52848 -20.23332 -19.82035 -17.67773 -16.90647 -16.68626 -16.48282 -15.83435 -15.68978 -15.60945 -14.98105 -14.73848 -14.47459 -14.11714 -13.98964 -13.73437 -13.54782 -13.30488 -13.08058 -12.92152 -12.78081 -12.70740 -12.58579 -12.38686 -11.85807 -11.63601 -11.52859 -11.51028 -11.35556 -11.09150 -11.03095 -10.89326 -10.65629 -10.43415 -10.01618 -9.98774 -9.93519 -9.84255 -9.67039 -9.27268 -8.71072 -8.38826 -8.37496 -7.86210 -6.98176 -5.82281 -3.14020 0.94102 1.44300 2.47158 2.54084 2.70564 3.36304 3.40124 3.45209 3.47250 3.74171 4.43221 4.44927 4.49624 4.51044 4.59752 4.80512 4.88118 4.95227 5.11398 5.16010 5.25367 5.27380 5.38045 5.48565 5.50318 5.53296 5.64004 5.73944 5.76775 5.85304 5.87689 6.14398 6.18910 6.24553 6.28097 6.42554 6.49856 6.56865 6.59307 6.60843 6.62262 6.64595 6.80821 6.95915 7.03441 7.08891 7.15176 7.23679 7.63015 7.65697 7.75166 8.06738 8.28578 8.34843 9.17660 9.79278 10.23427 11.21080 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016915 B = 0.001921 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.897090 B =14574.944494 C =15739.011075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.591 5.591 5 C -0.257 4.257 6 H 0.074 0.926 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.898 3.102 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.089 3.911 15 N -0.722 5.722 16 C 0.510 3.490 17 O -0.544 6.544 18 C -0.159 4.159 19 C 0.126 3.874 20 N -0.482 5.482 21 C 0.055 3.945 22 C -0.209 4.209 23 C -0.111 4.111 24 C -0.074 4.074 25 C -0.149 4.149 26 C -0.102 4.102 27 C -0.127 4.127 28 C 0.097 3.903 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.051 0.949 32 H 0.020 0.980 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.003 0.997 36 H 0.253 0.747 37 H 0.050 0.950 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.396 0.604 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.168 0.832 47 H 0.145 0.855 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.124 0.876 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.224 -5.840 -21.038 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.311 5.311 5 C -0.386 4.386 6 H 0.092 0.908 7 C -0.197 4.197 8 N -0.535 5.535 9 Si 0.728 3.272 10 H -0.216 1.216 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.014 3.986 14 C -0.037 4.037 15 N -0.373 5.373 16 C 0.295 3.705 17 O -0.422 6.422 18 C -0.200 4.200 19 C 0.004 3.996 20 N -0.165 5.165 21 C -0.071 4.071 22 C -0.234 4.234 23 C -0.116 4.116 24 C -0.092 4.092 25 C -0.168 4.168 26 C -0.121 4.121 27 C -0.147 4.147 28 C -0.009 4.009 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.021 0.979 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.229 0.771 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.185 0.815 47 H 0.163 0.837 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.142 0.858 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.664 -6.511 -20.090 23.225 hybrid contribution 0.337 0.655 0.627 0.968 sum 10.001 -5.856 -19.463 22.652 Atomic orbital electron populations 1.21626 0.98542 0.99335 1.00025 1.22227 0.92939 1.00483 1.01344 1.20933 0.81508 0.94516 0.98422 1.44244 1.01922 1.83587 1.01377 1.19252 0.92228 1.43615 0.83473 0.90787 1.24735 0.97585 1.00047 0.97327 1.70160 1.17215 1.41104 1.25019 0.86368 0.78411 0.79895 0.82557 1.21561 1.21943 1.20772 1.20951 0.96394 0.91677 0.89531 1.22775 0.95920 1.01769 0.83212 1.46221 1.57931 1.07549 1.25601 1.20295 0.79859 0.83914 0.86446 1.90739 1.54909 1.37070 1.59487 1.22038 1.02428 0.98434 0.97096 1.21495 0.98207 0.95849 0.84031 1.44102 1.04232 1.60797 1.07370 1.21874 0.98909 1.02890 0.83380 1.21660 0.90316 1.12607 0.98812 1.19244 0.93736 1.06209 0.92389 1.20252 0.90573 0.99024 0.99371 1.20619 0.98935 1.03947 0.93313 1.20811 0.95316 1.00095 0.95867 1.20102 0.91070 1.05265 0.98301 1.18295 0.83520 1.03781 0.95259 0.95082 0.94805 0.92959 0.96114 0.88335 0.89181 0.97884 0.93674 0.93215 0.93917 0.91521 0.91475 0.77078 0.88407 0.88473 0.88704 0.88201 0.81495 0.83703 0.86267 0.86218 0.85847 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.91 37.15 0.37 -2.25 16 2 C -0.13 -2.90 5.61 -26.73 -0.15 -3.05 16 3 C 0.17 3.94 4.92 -4.04 -0.02 3.92 16 4 N -0.59 -13.83 2.54 -173.24 -0.44 -14.26 16 5 C -0.26 -6.66 9.70 -15.06 -0.15 -6.81 16 6 H 0.07 1.90 7.94 -52.49 -0.42 1.48 16 7 C 0.00 0.03 4.89 -17.43 -0.09 -0.06 16 8 N -0.89 -24.02 8.62 55.49 0.48 -23.54 16 9 Si 0.90 21.09 29.62 -169.99 -5.04 16.06 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.14 2.67 5.82 -4.04 -0.02 2.65 16 14 C 0.09 1.61 5.88 -4.04 -0.02 1.59 16 15 N -0.72 -9.92 5.56 -60.29 -0.33 -10.26 16 16 C 0.51 7.09 7.83 -10.98 -0.09 7.00 16 17 O -0.54 -9.92 15.98 5.55 0.09 -9.83 16 18 C -0.16 -1.52 6.02 -27.88 -0.17 -1.69 16 19 C 0.13 1.25 5.29 -4.04 -0.02 1.23 16 20 N -0.48 -4.87 2.78 -114.43 -0.32 -5.19 16 21 C 0.05 0.48 11.27 -16.73 -0.19 0.29 16 22 C -0.21 -1.94 11.08 -37.67 -0.42 -2.36 16 23 C -0.11 -1.21 6.37 -105.14 -0.67 -1.88 16 24 C -0.07 -0.70 10.05 -39.65 -0.40 -1.10 16 25 C -0.15 -1.32 9.97 -39.95 -0.40 -1.71 16 26 C -0.10 -0.94 10.01 -39.54 -0.40 -1.33 16 27 C -0.13 -1.32 10.00 -39.43 -0.39 -1.71 16 28 C 0.10 1.09 6.81 -83.99 -0.57 0.52 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.02 0.44 5.97 -51.92 -0.31 0.13 16 33 H 0.10 2.55 6.33 -51.93 -0.33 2.22 16 34 H 0.09 2.32 5.85 -51.93 -0.30 2.01 16 35 H 0.00 0.06 7.98 -51.93 -0.41 -0.35 16 36 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 38 H 0.04 0.72 7.95 -51.93 -0.41 0.30 16 39 H 0.07 1.36 5.92 -51.93 -0.31 1.05 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.40 4.14 8.47 -40.82 -0.35 3.79 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 45 H 0.10 0.97 8.07 -51.93 -0.42 0.55 16 46 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 47 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 48 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 49 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 50 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 51 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 413.97 15.07 6.24 6.24 Total: -1.00 -30.85 413.97 -11.42 -42.27 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.31 Total: 5.28 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -3.79 Total: -6.75 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.61 Total: -53.25 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.04 Total: 16.06 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -30.85 -11.42 -42.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663692492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.353 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds