Wall clock time and date at job start Wed Apr 1 2020 02:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 N 1.46510 * 109.47214 * 180.02562 * 3 2 1 5 5 C 1.36929 * 119.99856 * 264.11847 * 4 3 2 6 6 H 1.07995 * 120.00331 * 188.01558 * 5 4 3 7 7 C 1.38815 * 120.00147 * 8.00978 * 5 4 3 8 8 N 1.31624 * 120.00074 * 25.65528 * 7 5 4 9 9 Si 1.86802 * 120.00142 * 205.64711 * 7 5 4 10 10 H 1.48501 * 109.46627 * 84.99133 * 9 7 5 11 11 H 1.48503 * 109.47246 * 204.98802 * 9 7 5 12 12 H 1.48496 * 109.47333 * 324.99169 * 9 7 5 13 13 C 1.46498 * 119.99769 * 84.11522 * 4 3 2 14 14 C 1.53000 * 109.46960 * 269.99756 * 13 4 3 15 15 N 1.46507 * 109.46828 * 180.02562 * 14 13 4 16 16 C 1.34781 * 119.99858 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99992 * 0.28113 * 16 15 14 18 18 C 1.50699 * 119.99983 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.46986 * 180.02562 * 18 16 15 20 20 N 1.46497 * 109.47050 * 179.97438 * 19 18 16 21 21 C 1.36834 * 125.06099 * 264.69941 * 20 19 18 22 22 C 1.34239 * 109.92590 * 179.81579 * 21 20 19 23 23 C 1.46489 * 107.00035 * 0.42727 * 22 21 20 24 24 C 1.39632 * 134.03062 * 179.76369 * 23 22 21 25 25 C 1.36622 * 119.76168 * 179.97438 * 24 23 22 26 26 C 1.38827 * 120.52920 * 359.97438 * 25 24 23 27 27 C 1.37744 * 120.66833 * 359.97438 * 26 25 24 28 28 C 1.37689 * 125.06399 * 84.99614 * 20 19 18 29 29 H 1.08994 * 109.47465 * 60.00050 * 1 2 3 30 30 H 1.09000 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46944 * 299.99382 * 1 2 3 32 32 H 1.09009 * 109.47340 * 240.00031 * 2 1 3 33 33 H 1.09004 * 109.47776 * 120.00382 * 2 1 3 34 34 H 1.08997 * 109.47048 * 60.00440 * 3 2 1 35 35 H 1.09000 * 109.47009 * 299.99877 * 3 2 1 36 36 H 0.96999 * 120.00351 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.46698 * 150.00335 * 13 4 3 38 38 H 1.08997 * 109.47275 * 29.99970 * 13 4 3 39 39 H 1.09000 * 109.46943 * 60.00728 * 14 13 4 40 40 H 1.08997 * 109.47301 * 300.00198 * 14 13 4 41 41 H 0.96992 * 119.99857 * 0.02562 * 15 14 13 42 42 H 1.08997 * 109.46942 * 299.99895 * 18 16 15 43 43 H 1.08992 * 109.47195 * 59.99917 * 18 16 15 44 44 H 1.08997 * 109.46964 * 299.99600 * 19 18 16 45 45 H 1.08992 * 109.47451 * 59.99792 * 19 18 16 46 46 H 1.07996 * 125.03806 * 359.97210 * 21 20 19 47 47 H 1.08002 * 126.50002 * 180.14521 * 22 21 20 48 48 H 1.07996 * 120.11675 * 0.02562 * 24 23 22 49 49 H 1.07999 * 119.73400 * 180.02562 * 25 24 23 50 50 H 1.07999 * 119.66852 * 180.02562 * 26 25 24 51 51 H 1.07999 * 120.11627 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5639 1.1787 6 1 5.2622 1.6941 1.1696 7 6 3.5067 1.5196 2.3862 8 7 2.3566 0.8850 2.4686 9 14 4.2195 2.3606 3.8942 10 1 3.8326 3.7944 3.8905 11 1 3.6924 1.7089 5.1200 12 1 5.6999 2.2474 3.8709 13 6 4.2369 1.3126 -1.2630 14 6 4.4918 -0.1675 -1.5547 15 7 5.2243 -0.2974 -2.8169 16 6 5.5608 -1.5182 -3.2783 17 8 5.2527 -2.5096 -2.6512 18 6 6.3147 -1.6518 -4.5762 19 6 6.5684 -3.1320 -4.8687 20 7 7.3008 -3.2618 -6.1308 21 6 6.7278 -3.4904 -7.3521 22 6 7.6776 -3.5516 -8.2988 23 6 8.9647 -3.3556 -7.6274 24 6 10.2908 -3.3188 -8.0630 25 6 11.2954 -3.1100 -7.1609 26 6 11.0085 -2.9335 -5.8142 27 6 9.7074 -2.9651 -5.3630 28 6 8.6687 -3.1779 -6.2638 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.8792 0.8537 3.3124 37 1 5.1894 1.8371 -1.1863 38 1 3.6475 1.7460 -2.0710 39 1 3.5394 -0.6920 -1.6314 40 1 5.0813 -0.6009 -0.7467 41 1 5.4671 0.4953 -3.3204 42 1 5.7262 -1.2178 -5.3845 43 1 7.2673 -1.1279 -4.4986 44 1 7.1567 -3.5663 -4.0604 45 1 5.6156 -3.6555 -4.9464 46 1 5.6683 -3.6023 -7.5288 47 1 7.5225 -3.7186 -9.3545 48 1 10.5215 -3.4541 -9.1094 49 1 12.3209 -3.0812 -7.4984 50 1 11.8134 -2.7690 -5.1132 51 1 9.4943 -2.8263 -4.3134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663692492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:48 Heat of formation + Delta-G solvation = 28.674431 kcal Electronic energy + Delta-G solvation = -28907.192573 eV Core-core repulsion = 25000.045261 eV Total energy + Delta-G solvation = -3907.147312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.25046 -40.76337 -38.39442 -37.96982 -35.93353 -34.79112 -33.75472 -33.21895 -32.07554 -30.42159 -29.72830 -29.02392 -27.37452 -25.80623 -24.58695 -23.43851 -22.49469 -22.37089 -21.93000 -21.34820 -20.96796 -18.83836 -18.50134 -17.50156 -17.36276 -17.10089 -16.84629 -16.66395 -16.26385 -15.88241 -15.74073 -15.44512 -15.08836 -14.93940 -14.73836 -14.57307 -14.36393 -14.15024 -13.96975 -13.66519 -13.51308 -13.42546 -13.40840 -13.03867 -12.81712 -12.65639 -12.51983 -12.40725 -12.28404 -12.22851 -12.18966 -11.82361 -11.71390 -11.70639 -11.56507 -11.14791 -11.02892 -10.57347 -10.33425 -10.06113 -9.09506 -8.86784 -8.55808 -7.80722 -5.12939 0.24365 0.72346 1.48332 1.51514 1.57283 1.57345 1.69725 1.84381 2.30877 2.57420 3.02298 3.27481 3.59779 3.67916 3.71870 3.79445 3.95198 4.04201 4.16374 4.21001 4.30478 4.30914 4.38175 4.41278 4.52110 4.60605 4.63578 4.68481 4.69313 4.77316 4.83745 4.84498 4.95500 4.98311 5.05583 5.09708 5.13137 5.20523 5.27046 5.44591 5.45287 5.52453 5.59830 5.64543 5.73433 5.87026 5.88242 5.93522 6.18883 6.34125 6.35753 6.39502 6.54414 7.20882 7.23908 7.91651 8.30553 9.20133 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016915 B = 0.001921 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.897090 B =14574.944494 C =15739.011075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 C 0.175 3.825 4 N -0.608 5.608 5 C -0.263 4.263 6 H 0.072 0.928 7 C -0.048 4.048 8 N -0.908 5.908 9 Si 0.953 3.047 10 H -0.288 1.288 11 H -0.301 1.301 12 H -0.278 1.278 13 C 0.145 3.855 14 C 0.111 3.889 15 N -0.711 5.711 16 C 0.511 3.489 17 O -0.591 6.591 18 C -0.139 4.139 19 C 0.130 3.870 20 N -0.485 5.485 21 C 0.051 3.949 22 C -0.218 4.218 23 C -0.134 4.134 24 C -0.083 4.083 25 C -0.153 4.153 26 C -0.107 4.107 27 C -0.145 4.145 28 C 0.074 3.926 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.023 0.977 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.026 0.974 36 H 0.246 0.754 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.028 0.972 41 H 0.416 0.584 42 H 0.124 0.876 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.196 0.804 47 H 0.164 0.836 48 H 0.138 0.862 49 H 0.143 0.857 50 H 0.142 0.858 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.876 -5.079 -23.593 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.050 3.950 4 N -0.329 5.329 5 C -0.393 4.393 6 H 0.090 0.910 7 C -0.243 4.243 8 N -0.554 5.554 9 Si 0.783 3.217 10 H -0.215 1.215 11 H -0.228 1.228 12 H -0.203 1.203 13 C 0.017 3.983 14 C -0.016 4.016 15 N -0.363 5.363 16 C 0.298 3.702 17 O -0.472 6.472 18 C -0.180 4.180 19 C 0.008 3.992 20 N -0.168 5.168 21 C -0.073 4.073 22 C -0.243 4.243 23 C -0.139 4.139 24 C -0.102 4.102 25 C -0.172 4.172 26 C -0.126 4.126 27 C -0.166 4.166 28 C -0.032 4.032 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.253 0.747 42 H 0.143 0.857 43 H 0.128 0.872 44 H 0.097 0.903 45 H 0.120 0.880 46 H 0.212 0.788 47 H 0.182 0.818 48 H 0.156 0.844 49 H 0.161 0.839 50 H 0.159 0.841 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.349 -5.721 -22.703 25.598 hybrid contribution 0.215 0.382 1.335 1.405 sum 10.564 -5.340 -21.369 24.428 Atomic orbital electron populations 1.21529 0.96132 1.00364 1.00650 1.22018 0.95057 0.99589 0.99347 1.20813 0.81595 0.94693 0.97917 1.44419 1.02344 1.83919 1.02186 1.19465 0.92323 1.42817 0.84662 0.90997 1.25356 0.98403 1.01001 0.99568 1.70329 1.18171 1.42028 1.24896 0.85490 0.77851 0.78695 0.79634 1.21466 1.22841 1.20302 1.21079 0.96964 0.91799 0.88411 1.22141 0.94585 1.00804 0.84070 1.45960 1.57341 1.08758 1.24230 1.20995 0.79038 0.82906 0.87275 1.90727 1.56697 1.38616 1.61118 1.21918 1.02558 0.98603 0.94918 1.21377 0.97989 0.95973 0.83870 1.44123 1.03972 1.61127 1.07622 1.22384 1.00237 1.02057 0.82652 1.21980 0.89788 1.12617 0.99904 1.19649 0.94905 1.06714 0.92646 1.20574 0.90324 0.98710 1.00553 1.20948 1.00060 1.03125 0.93083 1.21123 0.95414 0.99427 0.96648 1.20281 0.91691 1.06195 0.98428 1.18569 0.84126 1.04685 0.95821 0.92640 0.93610 0.94041 0.95858 0.92459 0.92181 0.95586 0.94461 0.92074 0.91087 0.93720 0.95369 0.74678 0.85750 0.87205 0.90263 0.87976 0.78754 0.81819 0.84444 0.83923 0.84070 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.91 71.98 0.71 -4.08 16 2 C -0.12 -5.38 5.61 30.59 0.17 -5.20 16 3 C 0.17 8.00 4.92 86.38 0.42 8.43 16 4 N -0.61 -28.33 2.54 -702.00 -1.78 -30.11 16 5 C -0.26 -13.76 9.70 84.04 0.81 -12.94 16 6 H 0.07 3.71 7.94 -2.91 -0.02 3.68 16 7 C -0.05 -2.55 4.89 84.86 0.41 -2.14 16 8 N -0.91 -50.40 8.62 21.65 0.19 -50.21 16 9 Si 0.95 44.09 29.62 68.60 2.03 46.12 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 C 0.14 5.20 5.82 86.38 0.50 5.70 16 14 C 0.11 4.02 5.88 86.38 0.51 4.53 16 15 N -0.71 -18.45 5.56 -463.04 -2.57 -21.03 16 16 C 0.51 13.67 7.83 87.66 0.69 14.36 16 17 O -0.59 -21.78 15.98 -3.04 -0.05 -21.83 16 18 C -0.14 -2.39 6.02 29.85 0.18 -2.21 16 19 C 0.13 2.46 5.29 86.38 0.46 2.92 16 20 N -0.49 -9.19 2.78 -515.95 -1.43 -10.63 16 21 C 0.05 0.80 11.27 83.00 0.94 1.73 16 22 C -0.22 -3.67 11.08 23.51 0.26 -3.41 16 23 C -0.13 -2.77 6.37 -20.20 -0.13 -2.90 16 24 C -0.08 -1.46 10.05 22.23 0.22 -1.23 16 25 C -0.15 -2.46 9.97 22.03 0.22 -2.24 16 26 C -0.11 -1.86 10.01 22.29 0.22 -1.63 16 27 C -0.15 -2.96 10.00 22.37 0.22 -2.74 16 28 C 0.07 1.60 6.81 39.03 0.27 1.86 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.02 1.00 5.97 -2.38 -0.01 0.98 16 33 H 0.06 3.06 6.33 -2.38 -0.02 3.04 16 34 H 0.06 3.13 5.85 -2.39 -0.01 3.12 16 35 H 0.03 1.06 7.98 -2.39 -0.02 1.04 16 36 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 37 H 0.06 2.06 8.03 -2.39 -0.02 2.04 16 38 H 0.07 2.17 7.95 -2.39 -0.02 2.15 16 39 H 0.04 1.83 5.92 -2.39 -0.01 1.81 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 41 H 0.42 7.51 8.47 -92.71 -0.79 6.73 16 42 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 45 H 0.10 1.88 8.07 -2.39 -0.02 1.86 16 46 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 47 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 48 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 49 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 50 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 51 H 0.12 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -69.09 413.97 3.61 -65.48 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.13 Total: 23.39 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 7.10 Total: -1.19 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -5.60 Total: -111.98 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.09 3.61 -65.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663692492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.155 kcal (2) G-P(sol) polarization free energy of solvation -69.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds