Wall clock time and date at job start Wed Apr 1 2020 02:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47303 * 2 1 4 4 H 1.09004 * 109.47042 * 305.00528 * 3 2 1 5 5 F 1.39903 * 109.46977 * 64.99893 * 3 2 1 6 6 C 1.50698 * 109.47395 * 185.00220 * 3 2 1 7 7 O 1.21285 * 119.99738 * 315.00045 * 6 3 2 8 8 N 1.34776 * 120.00278 * 135.00179 * 6 3 2 9 9 C 1.46500 * 120.00402 * 174.74256 * 8 6 3 10 10 H 1.08999 * 109.46406 * 4.59147 * 9 8 6 11 11 C 1.53000 * 109.47137 * 124.59093 * 9 8 6 12 12 N 1.46899 * 109.46963 * 305.00143 * 11 9 8 13 13 C 1.46908 * 110.99779 * 180.02562 * 12 11 9 14 14 C 1.50691 * 109.47082 * 180.02562 * 13 12 11 15 15 O 1.21293 * 120.00223 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99860 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99948 * 179.97438 * 16 14 13 18 18 H 1.07999 * 120.00151 * 0.02562 * 17 16 14 19 19 C 1.38956 * 120.00005 * 180.02562 * 17 16 14 20 20 N 1.31405 * 119.99810 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00035 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46867 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47033 * 120.00025 * 21 19 17 24 24 H 1.48493 * 109.46999 * 240.00148 * 21 19 17 25 25 C 1.52994 * 109.47117 * 244.59625 * 9 8 6 26 26 C 1.54270 * 110.03286 * 181.43556 * 25 9 8 27 27 C 1.54888 * 104.19338 * 217.10189 * 26 25 9 28 28 C 1.54886 * 102.75229 * 37.94101 * 27 26 25 29 29 C 1.53872 * 110.03546 * 64.26425 * 25 9 8 30 30 H 1.09000 * 109.47084 * 299.99801 * 1 2 3 31 31 H 1.09004 * 109.46903 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47071 * 59.99772 * 1 2 3 33 33 H 1.08997 * 109.47448 * 120.00181 * 2 1 3 34 34 H 1.09000 * 109.47084 * 240.00199 * 2 1 3 35 35 H 0.97003 * 119.99748 * 354.73621 * 8 6 3 36 36 H 1.08999 * 109.47111 * 65.00242 * 11 9 8 37 37 H 1.09002 * 109.46812 * 185.00607 * 11 9 8 38 38 H 1.00893 * 111.00481 * 56.04766 * 12 11 9 39 39 H 1.08998 * 109.46785 * 299.99947 * 13 12 11 40 40 H 1.09002 * 109.46976 * 59.99558 * 13 12 11 41 41 H 0.97001 * 120.00394 * 0.02562 * 16 14 13 42 42 H 0.97003 * 119.99964 * 179.97438 * 20 19 17 43 43 H 1.09011 * 110.01611 * 302.87087 * 25 9 8 44 44 H 1.09001 * 110.48067 * 335.77823 * 26 25 9 45 45 H 1.08997 * 110.48590 * 98.42079 * 26 25 9 46 46 H 1.08995 * 110.75600 * 279.62386 * 27 26 25 47 47 H 1.09003 * 110.90875 * 156.32802 * 27 26 25 48 48 H 1.08998 * 110.49245 * 203.37875 * 28 27 26 49 49 H 1.09004 * 110.60339 * 80.78545 * 28 27 26 50 50 H 1.09000 * 110.03332 * 238.57075 * 29 25 9 51 51 H 1.09002 * 110.03093 * 359.97438 * 29 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5419 1.4443 -0.1239 7 8 4.2064 0.6810 0.5446 8 7 4.1467 2.2941 -0.9774 9 6 5.6088 2.3776 -1.0150 10 1 6.0327 1.6272 -0.3478 11 6 6.0975 2.1250 -2.4427 12 7 5.5717 0.8390 -2.9199 13 6 6.0220 0.5622 -4.2906 14 6 5.4637 -0.7616 -4.7450 15 8 4.7595 -1.4105 -4.0006 16 7 5.7459 -1.2241 -5.9791 17 6 5.2384 -2.4287 -6.3924 18 1 4.6120 -3.0069 -5.7292 19 6 5.5298 -2.9058 -7.6645 20 7 6.2923 -2.2026 -8.4712 21 14 4.8377 -4.5469 -8.2279 22 1 4.0152 -5.1365 -7.1411 23 1 3.9925 -4.3407 -9.4314 24 1 5.9546 -5.4676 -8.5592 25 6 6.0518 3.7705 -0.5632 26 6 7.5888 3.8845 -0.6322 27 6 7.9616 4.7447 0.6007 28 6 6.9723 4.2410 1.6808 29 6 5.6598 3.9972 0.9074 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.6138 2.8504 -1.5669 36 1 5.7461 2.9254 -3.0940 37 1 7.1871 2.0989 -2.4544 38 1 4.5650 0.8145 -2.8578 39 1 5.6705 1.3517 -4.9549 40 1 7.1111 0.5253 -4.3148 41 1 6.3088 -0.7050 -6.5747 42 1 6.4960 -2.5358 -9.3592 43 1 5.5916 4.5313 -1.1938 44 1 8.0479 2.8984 -0.5623 45 1 7.8933 4.3839 -1.5520 46 1 7.8031 5.8033 0.3954 47 1 8.9920 4.5619 0.9054 48 1 6.8269 5.0004 2.4490 49 1 7.3305 3.3128 2.1262 50 1 5.0101 4.8684 0.9906 51 1 5.1535 3.1149 1.2991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671549581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:37 Heat of formation + Delta-G solvation = -171.095144 kcal Electronic energy + Delta-G solvation = -31001.765024 eV Core-core repulsion = 26655.185829 eV Total energy + Delta-G solvation = -4346.579195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.95098 -41.22699 -40.11610 -39.22463 -37.09865 -35.96563 -35.06708 -34.93057 -33.26756 -31.84457 -29.64290 -29.01523 -28.54856 -26.93664 -25.23891 -23.65947 -22.49010 -21.77843 -21.34861 -21.14459 -20.65397 -19.92308 -18.79715 -18.03329 -17.77499 -17.42977 -16.84896 -16.62825 -16.52358 -16.36642 -16.16817 -15.83845 -15.59565 -15.31280 -15.03363 -14.85727 -14.78413 -14.34498 -14.18255 -13.95849 -13.77601 -13.47058 -13.30550 -13.29316 -13.08816 -12.91841 -12.87511 -12.55834 -12.41776 -12.30997 -12.12762 -12.05754 -11.96348 -11.89197 -11.84199 -11.76923 -11.52176 -11.44943 -11.39502 -10.81149 -10.40892 -10.09184 -10.01838 -9.28889 -8.47609 -5.95954 1.35606 1.36162 1.41214 1.55120 1.92286 2.04742 2.28354 2.87086 3.19876 3.35793 3.45065 3.52640 3.62886 3.70781 3.74579 3.86174 3.88711 4.07399 4.22976 4.30515 4.37192 4.45411 4.47955 4.49259 4.56687 4.58636 4.67932 4.69095 4.70244 4.72412 4.81612 4.85948 4.95800 5.04083 5.06186 5.08948 5.10402 5.26915 5.27819 5.29908 5.40539 5.42349 5.49240 5.55957 5.87917 6.10109 6.34542 6.41536 6.59873 7.09632 7.12485 7.55894 8.11710 8.69980 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.002807 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.892374 B = 9974.057445 C =12477.903974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.087 3.913 4 H 0.139 0.861 5 F -0.199 7.199 6 C 0.493 3.507 7 O -0.561 6.561 8 N -0.703 5.703 9 C 0.152 3.848 10 H 0.073 0.927 11 C 0.053 3.947 12 N -0.686 5.686 13 C 0.066 3.934 14 C 0.436 3.564 15 O -0.624 6.624 16 N -0.572 5.572 17 C -0.332 4.332 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.275 1.275 23 H -0.269 1.269 24 H -0.272 1.272 25 C -0.089 4.089 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.128 4.128 29 C -0.116 4.116 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.416 0.584 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.341 0.659 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.049 0.951 50 H 0.072 0.928 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 19.618 13.303 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C 0.048 3.952 4 H 0.157 0.843 5 F -0.180 7.180 6 C 0.277 3.723 7 O -0.439 6.439 8 N -0.355 5.355 9 C 0.047 3.953 10 H 0.091 0.909 11 C -0.077 4.077 12 N -0.319 5.319 13 C -0.066 4.066 14 C 0.223 3.777 15 O -0.511 6.511 16 N -0.210 5.210 17 C -0.462 4.462 18 H 0.094 0.906 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.814 3.186 22 H -0.200 1.200 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.109 4.109 26 C -0.157 4.157 27 C -0.156 4.156 28 C -0.165 4.165 29 C -0.154 4.154 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.253 0.747 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.160 0.840 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.068 0.932 50 H 0.091 0.909 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.699 18.268 14.402 23.419 hybrid contribution -0.656 -0.194 -1.186 1.370 sum -3.355 18.073 13.216 22.640 Atomic orbital electron populations 1.21744 0.92292 1.03223 1.03148 1.21983 0.98822 0.93620 1.03880 1.21745 0.90667 0.96608 0.86175 0.84345 1.92851 1.91966 1.83959 1.49208 1.21342 0.91132 0.79890 0.79914 1.90731 1.67157 1.39881 1.46106 1.45883 1.08022 1.41509 1.40046 1.21214 0.79364 0.98016 0.96716 0.90876 1.22438 1.01462 0.89222 0.94538 1.59943 1.16738 1.33775 1.21486 1.21540 1.01609 0.93239 0.90237 1.20942 0.84798 0.89797 0.82135 1.90504 1.43510 1.61750 1.55299 1.41925 1.45903 1.19690 1.13450 1.19668 1.29601 0.97725 0.99207 0.90577 1.26004 0.96934 1.02795 0.95413 1.69667 1.37287 1.39938 1.09131 0.84906 0.78191 0.77362 0.78098 1.19967 1.19368 1.19692 1.22096 0.97116 0.94969 0.96744 1.22444 0.93476 1.00333 0.99434 1.22472 0.98847 0.99938 0.94390 1.22370 0.95329 1.00586 0.98255 1.22124 0.97825 1.00738 0.94736 0.91760 0.91494 0.90714 0.91723 0.90493 0.74692 0.92216 0.88867 0.83989 0.90975 0.87870 0.76917 0.91279 0.88365 0.92248 0.89538 0.90234 0.91217 0.91057 0.93229 0.90906 0.94492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.83 71.98 0.71 -1.83 16 2 C -0.14 -3.32 5.41 30.59 0.17 -3.16 16 3 C 0.09 1.79 3.78 29.85 0.11 1.90 16 4 H 0.14 1.69 7.98 -2.38 -0.02 1.67 16 5 F -0.20 -4.61 16.75 44.97 0.75 -3.85 16 6 C 0.49 12.85 6.49 87.66 0.57 13.42 16 7 O -0.56 -20.45 15.94 -3.04 -0.05 -20.50 16 8 N -0.70 -13.57 3.65 -442.54 -1.61 -15.19 16 9 C 0.15 3.14 1.86 44.99 0.08 3.22 16 10 H 0.07 2.15 6.91 -2.39 -0.02 2.13 16 11 C 0.05 1.09 5.07 86.30 0.44 1.52 16 12 N -0.69 -21.26 6.12 -517.93 -3.17 -24.43 16 13 C 0.07 2.18 6.17 85.55 0.53 2.71 16 14 C 0.44 20.67 7.82 87.65 0.69 21.36 16 15 O -0.62 -35.02 15.78 -3.07 -0.05 -35.07 16 16 N -0.57 -29.18 5.29 -306.98 -1.62 -30.80 16 17 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 18 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 19 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 20 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 21 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 C -0.09 -1.32 2.71 -10.07 -0.03 -1.35 16 26 C -0.12 -1.62 5.32 31.67 0.17 -1.45 16 27 C -0.12 -1.52 6.91 31.88 0.22 -1.30 16 28 C -0.13 -2.05 6.83 31.67 0.22 -1.83 16 29 C -0.12 -2.02 6.24 31.32 0.20 -1.83 16 30 H 0.06 1.05 7.94 -2.39 -0.02 1.03 16 31 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.06 1.74 8.05 -2.39 -0.02 1.72 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.42 5.03 8.72 -92.71 -0.81 4.22 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.82 7.17 -2.39 -0.02 1.80 16 38 H 0.34 11.08 7.57 -89.70 -0.68 10.40 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 42 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 43 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.06 0.99 7.52 -2.39 -0.02 0.97 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.05 0.94 8.14 -2.38 -0.02 0.93 16 50 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.04 0.88 6.88 -2.39 -0.02 0.86 16 Total: -1.00 -76.25 415.00 0.64 -75.61 By element: Atomic # 1 Polarization: 46.32 SS G_CDS: -1.27 Total: 45.05 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 5.34 Total: 13.14 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -6.12 Total: -119.35 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: -0.10 Total: -55.57 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.75 Total: -3.85 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -76.25 0.64 -75.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671549581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.485 kcal (2) G-P(sol) polarization free energy of solvation -76.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds