Wall clock time and date at job start Wed Apr 1 2020 02:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46822 * 2 1 4 4 H 1.09001 * 109.47118 * 55.00465 * 3 2 1 5 5 F 1.39903 * 109.47091 * 294.99881 * 3 2 1 6 6 C 1.50707 * 109.46837 * 175.00093 * 3 2 1 7 7 O 1.21280 * 119.99873 * 44.99908 * 6 3 2 8 8 N 1.34770 * 119.99724 * 224.99637 * 6 3 2 9 9 C 1.46501 * 119.99988 * 175.01302 * 8 6 3 10 10 H 1.08997 * 109.46708 * 4.90193 * 9 8 6 11 11 C 1.52996 * 109.47326 * 244.90150 * 9 8 6 12 12 N 1.46894 * 109.47428 * 54.99760 * 11 9 8 13 13 C 1.46904 * 111.00553 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47530 * 180.02562 * 13 12 11 15 15 O 1.21298 * 119.99857 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99968 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00080 * 179.97438 * 16 14 13 18 18 H 1.08011 * 119.99903 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00275 * 179.97438 * 17 16 14 20 20 N 1.31408 * 119.99606 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99885 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46972 * 60.00213 * 21 19 17 23 23 H 1.48504 * 109.46596 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47193 * 300.00124 * 21 19 17 25 25 C 1.53000 * 109.47341 * 124.89907 * 9 8 6 26 26 C 1.54266 * 110.03117 * 57.05357 * 25 9 8 27 27 C 1.54891 * 104.19655 * 217.10797 * 26 25 9 28 28 C 1.54892 * 102.74859 * 37.94389 * 27 26 25 29 29 C 1.53880 * 110.02995 * 299.89045 * 25 9 8 30 30 H 1.09002 * 109.47359 * 60.00183 * 1 2 3 31 31 H 1.09002 * 109.47374 * 299.99408 * 1 2 3 32 32 H 1.08997 * 109.47171 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46994 * 120.00179 * 2 1 3 34 34 H 1.08997 * 109.46924 * 239.99806 * 2 1 3 35 35 H 0.96999 * 120.00410 * 355.02336 * 8 6 3 36 36 H 1.09003 * 109.47168 * 175.00208 * 11 9 8 37 37 H 1.09002 * 109.47424 * 294.99889 * 11 9 8 38 38 H 1.00897 * 111.00016 * 303.95747 * 12 11 9 39 39 H 1.09003 * 109.46896 * 300.00700 * 13 12 11 40 40 H 1.09000 * 109.46865 * 60.00023 * 13 12 11 41 41 H 0.96996 * 120.00428 * 0.02562 * 16 14 13 42 42 H 0.97003 * 119.99822 * 180.02562 * 20 19 17 43 43 H 1.08993 * 110.01908 * 178.49856 * 25 9 8 44 44 H 1.09005 * 110.48441 * 335.78477 * 26 25 9 45 45 H 1.08994 * 110.48826 * 98.42790 * 26 25 9 46 46 H 1.08996 * 110.75959 * 279.62544 * 27 26 25 47 47 H 1.09000 * 110.75459 * 156.25518 * 27 26 25 48 48 H 1.09000 * 110.48237 * 203.37968 * 28 27 26 49 49 H 1.08999 * 110.59866 * 80.79438 * 28 27 26 50 50 H 1.09002 * 110.02862 * 238.56310 * 29 25 9 51 51 H 1.08998 * 110.03437 * 359.94648 * 29 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 9 1.6698 2.0680 -1.1955 6 6 3.5419 1.4443 0.1238 7 8 4.2064 0.6811 -0.5447 8 7 4.1466 2.2941 0.9773 9 6 5.5959 2.2220 1.1790 10 1 6.0215 1.4868 0.4961 11 6 5.8900 1.8079 2.6222 12 7 5.1936 0.5499 2.9224 13 6 5.4540 0.1203 4.3028 14 6 4.7253 -1.1708 4.5731 15 8 4.0545 -1.6825 3.7017 16 7 4.8181 -1.7563 5.7835 17 6 4.1547 -2.9306 6.0296 18 1 3.5581 -3.3867 5.2533 19 6 4.2508 -3.5346 7.2773 20 7 4.9771 -2.9798 8.2215 21 14 3.3475 -5.1350 7.6123 22 1 3.8248 -6.1792 6.6705 23 1 3.6103 -5.5688 9.0080 24 1 1.8889 -4.9287 7.4249 25 6 6.2178 3.5927 0.9048 26 6 5.5712 4.6579 1.8143 27 6 5.4845 5.9193 0.9196 28 6 5.1215 5.3310 -0.4665 29 6 5.9319 4.0207 -0.5453 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.6223 2.9534 1.4583 36 1 6.9636 1.6680 2.7484 37 1 5.5428 2.5864 3.3016 38 1 4.2030 0.6351 2.7506 39 1 6.5246 -0.0314 4.4403 40 1 5.1041 0.8870 4.9941 41 1 5.3536 -1.3465 6.4807 42 1 5.0445 -3.4016 9.0924 43 1 7.2933 3.5559 1.0781 44 1 4.5754 4.3410 2.1244 45 1 6.1997 4.8494 2.6839 46 1 6.4452 6.4328 0.8817 47 1 4.7006 6.5897 1.2720 48 1 5.4220 6.0138 -1.2612 49 1 4.0533 5.1231 -0.5270 50 1 6.8687 4.1924 -1.0755 51 1 5.3509 3.2515 -1.0540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671549582.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:41 Heat of formation + Delta-G solvation = -143.496233 kcal Electronic energy + Delta-G solvation = -31393.610670 eV Core-core repulsion = 27048.228254 eV Total energy + Delta-G solvation = -4345.382417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -47.98977 -40.40302 -38.41568 -38.20484 -35.88563 -34.13066 -34.01373 -33.60071 -31.26411 -30.92274 -29.03904 -27.88762 -27.60030 -25.43829 -23.79252 -22.62928 -21.91707 -21.05883 -20.37516 -19.66866 -19.20930 -17.99200 -17.89133 -16.94758 -16.43429 -16.26026 -15.85294 -15.55720 -15.47506 -15.20064 -14.65464 -14.42914 -14.14021 -14.10592 -13.88922 -13.73724 -13.53997 -13.45804 -13.11868 -12.94450 -12.62145 -12.43836 -12.38610 -11.96172 -11.79975 -11.57874 -11.52692 -11.35673 -11.31113 -11.14440 -11.12219 -11.03330 -10.98364 -10.91566 -10.79141 -10.74322 -10.44957 -10.22101 -9.76065 -9.50559 -9.24240 -8.44338 -8.05241 -7.96341 -6.42481 -3.83225 2.41738 2.84919 3.19487 3.25160 3.29674 3.89904 3.99499 4.20951 4.28745 4.33427 4.36452 4.41580 4.49636 4.57747 4.84974 4.96641 5.03480 5.07377 5.17304 5.22694 5.24787 5.26837 5.30192 5.33876 5.38559 5.40981 5.47395 5.57347 5.59410 5.63020 5.67901 5.75050 5.85346 5.87680 5.94857 5.96024 6.00130 6.02418 6.06631 6.12666 6.17782 6.25305 6.37599 7.18216 7.26441 7.54279 7.63201 8.04058 8.05426 8.60663 9.17187 9.53540 10.05176 10.75245 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.002841 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.878339 B = 9853.421060 C =11792.516181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 C 0.083 3.917 4 H 0.096 0.904 5 F -0.194 7.194 6 C 0.499 3.501 7 O -0.507 6.507 8 N -0.716 5.716 9 C 0.147 3.853 10 H 0.111 0.889 11 C 0.048 3.952 12 N -0.663 5.663 13 C 0.051 3.949 14 C 0.440 3.560 15 O -0.581 6.581 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.100 4.100 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.123 4.123 29 C -0.118 4.118 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.397 0.603 36 H 0.083 0.917 37 H 0.031 0.969 38 H 0.346 0.654 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 19.184 -12.335 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C 0.044 3.956 4 H 0.114 0.886 5 F -0.175 7.175 6 C 0.283 3.717 7 O -0.380 6.380 8 N -0.369 5.369 9 C 0.042 3.958 10 H 0.129 0.871 11 C -0.083 4.083 12 N -0.296 5.296 13 C -0.082 4.082 14 C 0.225 3.775 15 O -0.465 6.465 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.120 4.120 26 C -0.158 4.158 27 C -0.162 4.162 28 C -0.160 4.160 29 C -0.156 4.156 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.233 0.767 36 H 0.101 0.899 37 H 0.049 0.951 38 H 0.165 0.835 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.586 17.790 -13.500 22.340 hybrid contribution -0.795 0.476 1.538 1.796 sum -1.382 18.266 -11.962 21.878 Atomic orbital electron populations 1.21755 0.94343 1.02765 1.02006 1.22015 0.97081 0.93141 1.05906 1.21671 0.92139 0.96692 0.85125 0.88574 1.92862 1.92155 1.83965 1.48525 1.20856 0.90138 0.80650 0.80070 1.90747 1.65787 1.38574 1.42927 1.46036 1.09055 1.36488 1.45352 1.21190 0.79986 0.97203 0.97433 0.87065 1.22372 1.00272 0.90752 0.94883 1.59972 1.16423 1.29743 1.23461 1.21681 1.01246 0.96232 0.89035 1.19803 0.86467 0.87421 0.83764 1.90527 1.44733 1.66148 1.45133 1.41850 1.44579 1.22377 1.11216 1.19653 1.26130 0.98935 0.98173 0.87995 1.25254 0.97550 0.99753 0.95342 1.69603 1.39933 1.40364 1.04491 0.85926 0.79671 0.81431 0.77251 1.19853 1.20973 1.19926 1.22132 1.00498 0.93847 0.95522 1.22439 1.00574 0.94791 0.97970 1.22493 1.01350 0.97096 0.95245 1.22336 1.00047 0.96568 0.97084 1.22145 1.00151 0.97438 0.95872 0.92340 0.92411 0.91585 0.88639 0.89545 0.76737 0.89914 0.95081 0.83480 0.89579 0.94068 0.77501 0.91829 0.89614 0.91878 0.91305 0.91517 0.91739 0.91981 0.91829 0.91915 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.83 37.16 0.37 -1.15 16 2 C -0.14 -1.73 5.41 -26.73 -0.14 -1.88 16 3 C 0.08 0.92 3.76 -27.88 -0.10 0.82 16 4 H 0.10 0.77 8.02 -51.93 -0.42 0.36 16 5 F -0.19 -2.37 16.75 2.25 0.04 -2.33 16 6 C 0.50 6.49 6.73 -10.98 -0.07 6.42 16 7 O -0.51 -8.73 15.95 5.56 0.09 -8.64 16 8 N -0.72 -7.23 3.30 -53.81 -0.18 -7.40 16 9 C 0.15 1.55 2.19 -67.93 -0.15 1.40 16 10 H 0.11 1.52 6.91 -51.93 -0.36 1.16 16 11 C 0.05 0.54 5.32 -3.83 -0.02 0.52 16 12 N -0.66 -10.59 6.12 -115.06 -0.70 -11.30 16 13 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 14 C 0.44 10.35 7.82 -10.99 -0.09 10.26 16 15 O -0.58 -15.74 15.78 5.54 0.09 -15.65 16 16 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 17 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 18 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 21 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.10 -0.81 2.82 -89.50 -0.25 -1.06 16 26 C -0.12 -0.82 5.12 -25.07 -0.13 -0.94 16 27 C -0.12 -0.80 6.91 -24.74 -0.17 -0.97 16 28 C -0.12 -0.91 6.83 -25.07 -0.17 -1.08 16 29 C -0.12 -1.02 6.19 -25.61 -0.16 -1.18 16 30 H 0.06 0.55 7.94 -51.93 -0.41 0.14 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 35 H 0.40 3.03 6.87 -40.82 -0.28 2.75 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.31 7.13 -51.93 -0.37 -0.06 16 38 H 0.35 5.71 7.45 -39.29 -0.29 5.42 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.41 5.96 -51.93 -0.31 0.10 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.07 0.75 7.12 -51.93 -0.37 0.38 16 LS Contribution 412.03 15.07 6.21 6.21 Total: -1.00 -33.13 412.03 -8.74 -41.87 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -8.56 Total: 15.21 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.37 Total: 4.04 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.22 Total: -56.73 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.18 Total: -24.30 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.13 -8.74 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671549582.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.623 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds