Wall clock time and date at job start Wed Apr 1 2020 02:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46822 * 2 1 4 4 H 1.09001 * 109.47118 * 55.00465 * 3 2 1 5 5 F 1.39903 * 109.47091 * 294.99881 * 3 2 1 6 6 C 1.50707 * 109.46837 * 175.00093 * 3 2 1 7 7 O 1.21280 * 119.99873 * 44.99908 * 6 3 2 8 8 N 1.34770 * 119.99724 * 224.99637 * 6 3 2 9 9 C 1.46501 * 119.99988 * 175.01302 * 8 6 3 10 10 H 1.08997 * 109.46708 * 4.90193 * 9 8 6 11 11 C 1.52996 * 109.47326 * 244.90150 * 9 8 6 12 12 N 1.46894 * 109.47428 * 54.99760 * 11 9 8 13 13 C 1.46904 * 111.00553 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47530 * 180.02562 * 13 12 11 15 15 O 1.21298 * 119.99857 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99968 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00080 * 179.97438 * 16 14 13 18 18 H 1.08011 * 119.99903 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00275 * 179.97438 * 17 16 14 20 20 N 1.31408 * 119.99606 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99885 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46972 * 60.00213 * 21 19 17 23 23 H 1.48504 * 109.46596 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47193 * 300.00124 * 21 19 17 25 25 C 1.53000 * 109.47341 * 124.89907 * 9 8 6 26 26 C 1.54266 * 110.03117 * 57.05357 * 25 9 8 27 27 C 1.54891 * 104.19655 * 217.10797 * 26 25 9 28 28 C 1.54892 * 102.74859 * 37.94389 * 27 26 25 29 29 C 1.53880 * 110.02995 * 299.89045 * 25 9 8 30 30 H 1.09002 * 109.47359 * 60.00183 * 1 2 3 31 31 H 1.09002 * 109.47374 * 299.99408 * 1 2 3 32 32 H 1.08997 * 109.47171 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46994 * 120.00179 * 2 1 3 34 34 H 1.08997 * 109.46924 * 239.99806 * 2 1 3 35 35 H 0.96999 * 120.00410 * 355.02336 * 8 6 3 36 36 H 1.09003 * 109.47168 * 175.00208 * 11 9 8 37 37 H 1.09002 * 109.47424 * 294.99889 * 11 9 8 38 38 H 1.00897 * 111.00016 * 303.95747 * 12 11 9 39 39 H 1.09003 * 109.46896 * 300.00700 * 13 12 11 40 40 H 1.09000 * 109.46865 * 60.00023 * 13 12 11 41 41 H 0.96996 * 120.00428 * 0.02562 * 16 14 13 42 42 H 0.97003 * 119.99822 * 180.02562 * 20 19 17 43 43 H 1.08993 * 110.01908 * 178.49856 * 25 9 8 44 44 H 1.09005 * 110.48441 * 335.78477 * 26 25 9 45 45 H 1.08994 * 110.48826 * 98.42790 * 26 25 9 46 46 H 1.08996 * 110.75959 * 279.62544 * 27 26 25 47 47 H 1.09000 * 110.75459 * 156.25518 * 27 26 25 48 48 H 1.09000 * 110.48237 * 203.37968 * 28 27 26 49 49 H 1.08999 * 110.59866 * 80.79438 * 28 27 26 50 50 H 1.09002 * 110.02862 * 238.56310 * 29 25 9 51 51 H 1.08998 * 110.03437 * 359.94648 * 29 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 9 1.6698 2.0680 -1.1955 6 6 3.5419 1.4443 0.1238 7 8 4.2064 0.6811 -0.5447 8 7 4.1466 2.2941 0.9773 9 6 5.5959 2.2220 1.1790 10 1 6.0215 1.4868 0.4961 11 6 5.8900 1.8079 2.6222 12 7 5.1936 0.5499 2.9224 13 6 5.4540 0.1203 4.3028 14 6 4.7253 -1.1708 4.5731 15 8 4.0545 -1.6825 3.7017 16 7 4.8181 -1.7563 5.7835 17 6 4.1547 -2.9306 6.0296 18 1 3.5581 -3.3867 5.2533 19 6 4.2508 -3.5346 7.2773 20 7 4.9771 -2.9798 8.2215 21 14 3.3475 -5.1350 7.6123 22 1 3.8248 -6.1792 6.6705 23 1 3.6103 -5.5688 9.0080 24 1 1.8889 -4.9287 7.4249 25 6 6.2178 3.5927 0.9048 26 6 5.5712 4.6579 1.8143 27 6 5.4845 5.9193 0.9196 28 6 5.1215 5.3310 -0.4665 29 6 5.9319 4.0207 -0.5453 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.6223 2.9534 1.4583 36 1 6.9636 1.6680 2.7484 37 1 5.5428 2.5864 3.3016 38 1 4.2030 0.6351 2.7506 39 1 6.5246 -0.0314 4.4403 40 1 5.1041 0.8870 4.9941 41 1 5.3536 -1.3465 6.4807 42 1 5.0445 -3.4016 9.0924 43 1 7.2933 3.5559 1.0781 44 1 4.5754 4.3410 2.1244 45 1 6.1997 4.8494 2.6839 46 1 6.4452 6.4328 0.8817 47 1 4.7006 6.5897 1.2720 48 1 5.4220 6.0138 -1.2612 49 1 4.0533 5.1231 -0.5270 50 1 6.8687 4.1924 -1.0755 51 1 5.3509 3.2515 -1.0540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671549582.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:40 Heat of formation + Delta-G solvation = -166.532703 kcal Electronic energy + Delta-G solvation = -31394.609607 eV Core-core repulsion = 27048.228254 eV Total energy + Delta-G solvation = -4346.381353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -48.94977 -41.33541 -40.10049 -39.22718 -37.00035 -35.92721 -35.00131 -34.86538 -33.25943 -31.87886 -29.66060 -28.99964 -28.57663 -26.95144 -25.24937 -23.62134 -22.74104 -21.94002 -21.13866 -21.12456 -20.32457 -19.89860 -18.92604 -18.06660 -17.65163 -17.33898 -16.93532 -16.70602 -16.44992 -16.39801 -16.14637 -15.85818 -15.42429 -15.29832 -15.00428 -14.89370 -14.74923 -14.25713 -14.13697 -13.97474 -13.86536 -13.62500 -13.44055 -13.28414 -13.06693 -12.97266 -12.85727 -12.70109 -12.43579 -12.13651 -12.06198 -11.99018 -11.90648 -11.89088 -11.82978 -11.57387 -11.50219 -11.46983 -11.40702 -10.81473 -10.41340 -10.10849 -10.01356 -9.26937 -8.46794 -5.95210 1.38335 1.39103 1.41256 1.51843 1.93319 2.05731 2.28699 2.88253 3.20701 3.36353 3.46019 3.53787 3.61825 3.67713 3.76647 3.84277 3.89352 4.11266 4.26058 4.31861 4.37562 4.43664 4.48255 4.49403 4.57328 4.58731 4.65828 4.69712 4.73622 4.74548 4.80344 4.84654 5.00555 5.04898 5.08189 5.10243 5.11784 5.29043 5.29407 5.33998 5.40503 5.41856 5.51856 5.53673 5.88556 6.10708 6.33789 6.42302 6.60596 7.10089 7.12889 7.56634 8.12427 8.70378 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.002841 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.878339 B = 9853.421060 C =11792.516181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.087 3.913 4 H 0.136 0.864 5 F -0.199 7.199 6 C 0.494 3.506 7 O -0.560 6.560 8 N -0.698 5.698 9 C 0.152 3.848 10 H 0.075 0.925 11 C 0.051 3.949 12 N -0.686 5.686 13 C 0.066 3.934 14 C 0.436 3.564 15 O -0.623 6.623 16 N -0.572 5.572 17 C -0.334 4.334 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.270 1.270 25 C -0.092 4.092 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.121 4.121 29 C -0.118 4.118 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.413 0.587 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.340 0.660 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.059 0.941 50 H 0.064 0.936 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 21.407 -10.906 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C 0.048 3.952 4 H 0.154 0.846 5 F -0.180 7.180 6 C 0.279 3.721 7 O -0.437 6.437 8 N -0.352 5.352 9 C 0.047 3.953 10 H 0.093 0.907 11 C -0.078 4.078 12 N -0.319 5.319 13 C -0.066 4.066 14 C 0.223 3.777 15 O -0.509 6.509 16 N -0.209 5.209 17 C -0.463 4.463 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.200 1.200 23 H -0.194 1.194 24 H -0.195 1.195 25 C -0.112 4.112 26 C -0.155 4.155 27 C -0.156 4.156 28 C -0.159 4.159 29 C -0.156 4.156 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.251 0.749 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.159 0.841 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.083 0.917 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.713 20.077 -12.036 23.419 hybrid contribution -0.706 -0.190 1.031 1.264 sum -1.419 19.887 -11.005 22.773 Atomic orbital electron populations 1.21738 0.92359 1.03144 1.03124 1.21953 0.98768 0.93649 1.03781 1.21753 0.90913 0.96483 0.86073 0.84638 1.92850 1.92060 1.83908 1.49156 1.21270 0.90953 0.80186 0.79738 1.90723 1.67001 1.40809 1.45148 1.45917 1.09193 1.35801 1.44283 1.21098 0.80020 0.97938 0.96290 0.90660 1.22458 1.00372 0.89497 0.95464 1.59945 1.16469 1.32760 1.22678 1.21537 1.01129 0.93379 0.90584 1.20930 0.85503 0.88798 0.82459 1.90503 1.46425 1.67774 1.46202 1.41908 1.44835 1.22105 1.12095 1.19607 1.27615 1.00708 0.98406 0.90499 1.25999 0.97933 1.02511 0.94664 1.69658 1.40207 1.41409 1.04777 0.85033 0.78540 0.77479 0.77568 1.20001 1.19397 1.19545 1.22084 1.01015 0.92541 0.95543 1.22459 1.00885 0.94176 0.98009 1.22470 1.02026 0.97007 0.94101 1.22325 0.99494 0.95867 0.98217 1.22119 1.00073 0.97382 0.96056 0.91554 0.90850 0.91668 0.90809 0.91695 0.74879 0.89011 0.92198 0.84106 0.87915 0.91077 0.76952 0.91280 0.88606 0.91368 0.90051 0.90947 0.90696 0.91587 0.92264 0.91682 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.83 71.98 0.71 -2.14 16 2 C -0.14 -3.60 5.41 30.59 0.17 -3.44 16 3 C 0.09 1.90 3.76 29.85 0.11 2.02 16 4 H 0.14 1.89 8.02 -2.39 -0.02 1.87 16 5 F -0.20 -4.77 16.75 44.97 0.75 -4.02 16 6 C 0.49 13.17 6.73 87.66 0.59 13.76 16 7 O -0.56 -20.57 15.95 -3.03 -0.05 -20.61 16 8 N -0.70 -13.58 3.30 -442.54 -1.46 -15.04 16 9 C 0.15 3.08 2.19 44.99 0.10 3.18 16 10 H 0.08 2.15 6.91 -2.39 -0.02 2.13 16 11 C 0.05 1.06 5.32 86.30 0.46 1.52 16 12 N -0.69 -21.21 6.12 -517.94 -3.17 -24.38 16 13 C 0.07 2.18 6.17 85.55 0.53 2.71 16 14 C 0.44 20.60 7.82 87.66 0.69 21.29 16 15 O -0.62 -34.68 15.78 -3.09 -0.05 -34.72 16 16 N -0.57 -29.13 5.29 -306.98 -1.62 -30.75 16 17 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 20 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16 21 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 C -0.09 -1.32 2.82 -10.07 -0.03 -1.35 16 26 C -0.12 -1.20 5.12 31.67 0.16 -1.04 16 27 C -0.12 -1.16 6.91 31.89 0.22 -0.94 16 28 C -0.12 -1.58 6.83 31.67 0.22 -1.36 16 29 C -0.12 -1.96 6.19 31.32 0.19 -1.76 16 30 H 0.07 1.19 7.94 -2.39 -0.02 1.17 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 1.88 8.05 -2.39 -0.02 1.86 16 35 H 0.41 5.39 6.87 -92.71 -0.64 4.75 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 0.94 7.13 -2.39 -0.02 0.92 16 38 H 0.34 11.06 7.45 -89.70 -0.67 10.39 16 39 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.40 19.06 7.90 -92.71 -0.73 18.32 16 42 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 43 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 0.63 5.96 -2.38 -0.01 0.62 16 45 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 46 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.04 0.89 7.12 -2.39 -0.02 0.87 16 Total: -1.00 -74.89 412.03 1.02 -73.87 By element: Atomic # 1 Polarization: 46.64 SS G_CDS: -1.08 Total: 45.56 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 5.39 Total: 14.19 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -5.97 Total: -119.18 kcal Atomic # 8 Polarization: -55.24 SS G_CDS: -0.10 Total: -55.34 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.75 Total: -4.02 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -74.89 1.02 -73.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671549582.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.665 kcal (2) G-P(sol) polarization free energy of solvation -74.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds