Wall clock time and date at job start Wed Apr 1 2020 02:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47402 * 2 1 4 4 N 1.46504 * 109.46767 * 120.00268 * 2 1 3 5 5 C 1.46505 * 119.99717 * 307.59339 * 4 2 1 6 6 C 1.52993 * 109.47083 * 269.99933 * 5 4 2 7 7 N 1.46504 * 109.47457 * 180.02562 * 6 5 4 8 8 C 1.46501 * 120.00263 * 270.00856 * 7 6 5 9 9 C 1.36935 * 119.99746 * 89.99898 * 7 6 5 10 10 H 1.07999 * 120.00216 * 33.40287 * 9 7 6 11 11 C 1.38818 * 119.99846 * 213.40016 * 9 7 6 12 12 N 1.31616 * 120.00077 * 5.65361 * 11 9 7 13 13 Si 1.86803 * 119.99902 * 185.65184 * 11 9 7 14 14 H 1.48501 * 109.47073 * 89.99874 * 13 11 9 15 15 H 1.48502 * 109.47200 * 210.00362 * 13 11 9 16 16 H 1.48504 * 109.47079 * 330.00149 * 13 11 9 17 17 C 1.34772 * 119.99874 * 127.59651 * 4 2 1 18 18 O 1.21652 * 119.99791 * 186.63650 * 17 4 2 19 19 C 1.47056 * 120.00239 * 6.63467 * 17 4 2 20 20 C 1.35865 * 125.42998 * 22.70803 * 19 17 4 21 21 C 1.41591 * 107.72644 * 180.02562 * 20 19 17 22 22 C 1.40102 * 133.37865 * 180.02562 * 21 20 19 23 23 C 1.36440 * 119.82745 * 180.02562 * 22 21 20 24 24 C 1.38943 * 120.61760 * 359.97438 * 23 22 21 25 25 C 1.37669 * 120.64559 * 0.02562 * 24 23 22 26 26 C 1.39224 * 119.81136 * 359.97438 * 25 24 23 27 27 N 1.37479 * 133.17754 * 180.02562 * 26 25 24 28 28 C 1.46499 * 125.60677 * 0.26121 * 27 26 25 29 29 H 1.09001 * 109.47055 * 300.00348 * 1 2 3 30 30 H 1.09004 * 109.46825 * 59.99656 * 1 2 3 31 31 H 1.08990 * 109.47722 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47055 * 239.99652 * 2 1 3 33 33 H 1.08993 * 109.47049 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46950 * 300.00412 * 3 2 1 35 35 H 1.09005 * 109.46600 * 59.99811 * 3 2 1 36 36 H 1.08998 * 109.47460 * 30.00504 * 5 4 2 37 37 H 1.09003 * 109.46957 * 150.00349 * 5 4 2 38 38 H 1.08998 * 109.47439 * 300.00583 * 6 5 4 39 39 H 1.09003 * 109.46885 * 60.00371 * 6 5 4 40 40 H 1.08998 * 109.47348 * 94.80231 * 8 7 6 41 41 H 1.09003 * 109.46885 * 214.81078 * 8 7 6 42 42 H 1.09008 * 109.46503 * 334.80607 * 8 7 6 43 43 H 0.97000 * 119.99914 * 180.02562 * 12 11 9 44 44 H 1.08004 * 126.13493 * 0.02562 * 20 19 17 45 45 H 1.08005 * 120.08738 * 359.97438 * 22 21 20 46 46 H 1.08004 * 119.69025 * 179.97438 * 23 22 21 47 47 H 1.07996 * 119.67242 * 179.97438 * 24 23 22 48 48 H 1.07995 * 120.09383 * 179.97438 * 25 24 23 49 49 H 1.09001 * 109.47416 * 264.37071 * 28 27 26 50 50 H 1.08998 * 109.46836 * 24.37149 * 28 27 26 51 51 H 1.09003 * 109.47290 * 144.36564 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5326 -0.2944 2.5204 6 6 2.4412 0.7961 3.0914 7 7 1.9559 1.1920 4.4159 8 6 0.9818 2.2787 4.5444 9 6 2.4128 0.5462 5.5336 10 1 3.4265 0.1754 5.5666 11 6 1.5728 0.3683 6.6244 12 7 0.3069 0.7197 6.5444 13 14 2.2391 -0.3699 8.2057 14 1 2.7423 0.7157 9.0852 15 1 1.1556 -1.1090 8.9021 16 1 3.3493 -1.3033 7.8870 17 6 2.9143 -1.6906 1.0784 18 8 3.2287 -2.3437 2.0554 19 6 3.5117 -1.9921 -0.2310 20 6 3.6045 -1.1251 -1.2729 21 6 4.2403 -1.8019 -2.3417 22 6 4.5997 -1.4239 -3.6421 23 6 5.2177 -2.3212 -4.4633 24 6 5.4958 -3.6091 -4.0225 25 6 5.1525 -4.0045 -2.7492 26 6 4.5211 -3.1070 -1.8924 27 7 4.0673 -3.2025 -0.5982 28 6 4.1625 -4.3906 0.2535 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 0.5155 0.0880 2.4349 37 1 1.5412 -1.1589 3.1842 38 1 3.4583 0.4137 3.1769 39 1 2.4326 1.6606 2.4276 40 1 -0.0245 1.8618 4.5838 41 1 1.1797 2.8376 5.4591 42 1 1.0657 2.9452 3.6859 43 1 -0.2799 0.5957 7.3068 44 1 3.2558 -0.1029 -1.2838 45 1 4.3873 -0.4250 -3.9938 46 1 5.4934 -2.0275 -5.4654 47 1 5.9851 -4.3072 -4.6855 48 1 5.3725 -5.0079 -2.4160 49 1 3.2309 -4.9538 0.1971 50 1 4.9869 -5.0169 -0.0874 51 1 4.3407 -4.0852 1.2846 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677209524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:27 Heat of formation + Delta-G solvation = 73.279700 kcal Electronic energy + Delta-G solvation = -30938.624276 eV Core-core repulsion = 27033.411194 eV Total energy + Delta-G solvation = -3905.213082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.86923 -39.60024 -37.20666 -36.63293 -35.42093 -33.26388 -31.98179 -31.10279 -30.45636 -29.77864 -27.91472 -27.32828 -26.42312 -25.79957 -24.36829 -23.03716 -21.88700 -21.71108 -20.69422 -20.36547 -18.96308 -17.13016 -17.04786 -16.67913 -16.55084 -15.81092 -15.36975 -14.99769 -14.71242 -14.57816 -14.37001 -14.09317 -13.96956 -13.54102 -13.49118 -13.27527 -13.16799 -13.03735 -12.76315 -12.63198 -12.39896 -12.13826 -12.06224 -11.88031 -11.68188 -11.52955 -11.34432 -11.12777 -11.09466 -10.83839 -10.80583 -10.61864 -10.45342 -10.08572 -10.01631 -9.88999 -9.67310 -9.57177 -8.58352 -8.45378 -8.26801 -7.78676 -6.59159 -5.71022 -3.27324 0.69130 1.47588 2.06491 2.43897 3.31129 3.36300 3.41584 3.46815 3.50454 3.74335 4.40564 4.47740 4.53812 4.66607 4.83413 4.85167 4.96333 5.11267 5.17250 5.21555 5.23833 5.30462 5.38992 5.45827 5.53885 5.61122 5.62453 5.63465 5.70105 5.79682 5.81539 5.84478 5.86071 5.91343 6.18203 6.22643 6.26826 6.30983 6.42978 6.45413 6.51021 6.55983 6.70636 6.73096 6.85702 6.94136 7.07723 7.11616 7.30589 7.65844 7.71545 7.87373 8.34741 8.50273 9.27651 9.86570 10.40467 11.32224 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016666 B = 0.002887 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.658876 B = 9695.133401 C =10788.678570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 C -0.172 4.172 4 N -0.583 5.583 5 C 0.093 3.907 6 C 0.140 3.860 7 N -0.595 5.595 8 C 0.158 3.842 9 C -0.257 4.257 10 H 0.064 0.936 11 C 0.011 3.989 12 N -0.904 5.904 13 Si 0.902 3.098 14 H -0.287 1.287 15 H -0.290 1.290 16 H -0.277 1.277 17 C 0.571 3.429 18 O -0.531 6.531 19 C 0.042 3.958 20 C -0.167 4.167 21 C -0.114 4.114 22 C -0.064 4.064 23 C -0.151 4.151 24 C -0.096 4.096 25 C -0.127 4.127 26 C 0.102 3.898 27 N -0.451 5.451 28 C 0.071 3.929 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.034 0.966 41 H 0.036 0.964 42 H -0.002 1.002 43 H 0.253 0.747 44 H 0.167 0.833 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.119 0.881 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.108 -4.864 -23.593 24.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 C -0.230 4.230 4 N -0.316 5.316 5 C -0.030 4.030 6 C 0.012 3.988 7 N -0.318 5.318 8 C 0.013 3.987 9 C -0.387 4.387 10 H 0.082 0.918 11 C -0.188 4.188 12 N -0.548 5.548 13 Si 0.732 3.268 14 H -0.214 1.214 15 H -0.216 1.216 16 H -0.203 1.203 17 C 0.358 3.642 18 O -0.409 6.409 19 C -0.069 4.069 20 C -0.193 4.193 21 C -0.118 4.118 22 C -0.083 4.083 23 C -0.171 4.171 24 C -0.116 4.116 25 C -0.148 4.148 26 C -0.007 4.007 27 N -0.131 5.131 28 C -0.070 4.070 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.017 0.983 43 H 0.063 0.937 44 H 0.184 0.816 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.137 0.863 49 H 0.089 0.911 50 H 0.098 0.902 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.104 -5.480 -22.612 23.820 hybrid contribution 0.143 -0.550 0.987 1.139 sum 5.247 -6.031 -21.625 23.056 Atomic orbital electron populations 1.22150 0.94713 1.02413 1.02777 1.22007 0.95133 0.94120 0.89368 1.22375 1.01721 0.95796 1.03129 1.48007 1.41422 1.33509 1.08627 1.22690 0.99033 1.01132 0.80162 1.21336 0.96154 0.94096 0.87225 1.43837 1.50678 1.36852 1.00413 1.20851 0.93570 0.88202 0.96031 1.19153 0.94836 1.32260 0.92416 0.91804 1.25291 0.94927 0.99011 0.99599 1.69984 1.03703 1.51002 1.30122 0.86287 0.78010 0.79075 0.83411 1.21412 1.21629 1.20265 1.17196 0.79981 0.80915 0.86112 1.90821 1.61283 1.49765 1.39050 1.20114 1.04007 0.86715 0.96104 1.21423 1.05604 1.00577 0.91718 1.18213 1.04668 0.93555 0.95394 1.20377 0.97034 0.99387 0.91471 1.20598 1.02446 0.93970 1.00036 1.20813 0.99639 0.96417 0.94720 1.20034 1.02628 0.98469 0.93659 1.18392 1.01092 0.96311 0.84882 1.43893 1.48091 1.10781 1.10327 1.22193 1.02687 0.85400 0.96739 0.91458 0.91486 0.92452 0.86784 0.91998 0.91555 0.90770 0.90781 0.89511 0.93890 0.93973 0.94797 0.94530 0.98306 0.93718 0.81583 0.85853 0.86086 0.85824 0.86337 0.91133 0.90150 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.00 37.16 0.33 -1.51 16 2 C 0.10 1.18 2.50 -67.93 -0.17 1.01 16 3 C -0.17 -1.88 7.77 37.16 0.29 -1.59 16 4 N -0.58 -9.39 2.40 -167.50 -0.40 -9.80 16 5 C 0.09 1.83 5.39 -4.04 -0.02 1.81 16 6 C 0.14 2.98 5.79 -4.04 -0.02 2.95 16 7 N -0.59 -15.17 2.89 -181.11 -0.52 -15.69 16 8 C 0.16 3.83 9.07 59.85 0.54 4.38 16 9 C -0.26 -7.27 9.56 -15.06 -0.14 -7.42 16 10 H 0.06 1.84 7.83 -52.49 -0.41 1.42 16 11 C 0.01 0.31 5.26 -17.43 -0.09 0.22 16 12 N -0.90 -26.46 10.99 55.49 0.61 -25.85 16 13 Si 0.90 22.46 29.56 -169.99 -5.02 17.43 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 17 C 0.57 9.97 7.53 -12.69 -0.10 9.88 16 18 O -0.53 -11.14 14.44 5.23 0.08 -11.07 16 19 C 0.04 0.62 6.44 -82.29 -0.53 0.09 16 20 C -0.17 -2.11 8.41 -39.15 -0.33 -2.44 16 21 C -0.11 -1.39 6.16 -106.93 -0.66 -2.05 16 22 C -0.06 -0.63 10.06 -39.53 -0.40 -1.03 16 23 C -0.15 -1.31 9.97 -39.97 -0.40 -1.71 16 24 C -0.10 -0.84 10.01 -39.53 -0.40 -1.23 16 25 C -0.13 -1.30 9.90 -39.42 -0.39 -1.69 16 26 C 0.10 1.29 6.81 -83.98 -0.57 0.72 16 27 N -0.45 -6.18 3.22 -117.70 -0.38 -6.56 16 28 C 0.07 0.83 10.66 59.85 0.64 1.47 16 29 H 0.07 0.86 6.47 -51.93 -0.34 0.52 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 1.28 3.78 -51.93 -0.20 1.08 16 33 H 0.06 0.68 7.48 -51.93 -0.39 0.30 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.94 5.94 -51.93 -0.31 0.63 16 36 H 0.07 1.42 6.06 -51.93 -0.31 1.11 16 37 H 0.09 2.05 7.34 -51.93 -0.38 1.67 16 38 H 0.04 0.98 8.04 -51.93 -0.42 0.57 16 39 H 0.04 0.79 5.15 -51.93 -0.27 0.52 16 40 H 0.03 0.88 7.19 -51.93 -0.37 0.51 16 41 H 0.04 0.94 7.81 -51.93 -0.41 0.54 16 42 H 0.00 -0.03 7.84 -51.92 -0.41 -0.44 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.17 1.77 4.30 -52.48 -0.23 1.54 16 45 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 46 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 47 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 48 H 0.12 0.98 7.91 -52.49 -0.42 0.56 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.08 0.71 7.86 -51.93 -0.41 0.31 16 51 H 0.11 1.47 6.34 -51.93 -0.33 1.14 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -33.03 397.48 -9.75 -42.77 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.68 Total: 0.93 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -2.41 Total: 1.84 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.69 Total: -57.89 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.03 -9.75 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677209524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.051 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds