Wall clock time and date at job start Wed Apr 1 2020 02:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47235 * 2 1 4 4 H 1.08994 * 109.47334 * 305.00441 * 3 2 1 5 5 F 1.39908 * 109.46931 * 65.00138 * 3 2 1 6 6 C 1.50698 * 109.47124 * 184.99868 * 3 2 1 7 7 O 1.21284 * 120.00293 * 316.10773 * 6 3 2 8 8 N 1.34781 * 119.99822 * 136.10968 * 6 3 2 9 9 C 1.46928 * 120.62976 * 185.52397 * 8 6 3 10 10 C 1.53188 * 108.77858 * 233.58307 * 9 8 6 11 11 C 1.53040 * 109.31503 * 305.36840 * 10 9 8 12 12 C 1.53049 * 109.53636 * 61.36183 * 11 10 9 13 13 H 1.08992 * 109.49887 * 58.61971 * 12 11 10 14 14 C 1.53002 * 109.49324 * 178.68415 * 12 11 10 15 15 N 1.46903 * 109.46625 * 184.99715 * 14 12 11 16 16 C 1.46902 * 110.99827 * 66.05044 * 15 14 12 17 17 C 1.46899 * 110.99786 * 189.99828 * 15 14 12 18 18 C 1.50707 * 109.46722 * 170.00056 * 17 15 14 19 19 O 1.21284 * 120.00256 * 0.02562 * 18 17 15 20 20 N 1.34781 * 119.99250 * 179.97438 * 18 17 15 21 21 C 1.37105 * 119.99190 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00142 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99667 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00017 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99881 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47447 * 60.00110 * 25 23 21 27 27 H 1.48503 * 109.47056 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47352 * 299.99609 * 25 23 21 29 29 C 1.46919 * 120.63076 * 5.24646 * 8 6 3 30 30 H 1.08996 * 109.46676 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46799 * 300.00015 * 1 2 3 32 32 H 1.08992 * 109.46866 * 59.99964 * 1 2 3 33 33 H 1.09001 * 109.47605 * 239.99899 * 2 1 3 34 34 H 1.09004 * 109.47296 * 120.00030 * 2 1 3 35 35 H 1.08998 * 109.59012 * 353.37891 * 9 8 6 36 36 H 1.09005 * 109.58518 * 113.79903 * 9 8 6 37 37 H 1.09004 * 109.49608 * 65.31925 * 10 9 8 38 38 H 1.09000 * 109.50071 * 185.38162 * 10 9 8 39 39 H 1.08996 * 109.46156 * 181.37864 * 11 10 9 40 40 H 1.09001 * 109.45964 * 301.36083 * 11 10 9 41 41 H 1.08993 * 109.47028 * 304.99867 * 14 12 11 42 42 H 1.08995 * 109.46973 * 65.00620 * 14 12 11 43 43 H 1.08992 * 109.47426 * 59.99604 * 16 15 14 44 44 H 1.08999 * 109.46970 * 179.97438 * 16 15 14 45 45 H 1.09004 * 109.46959 * 299.99420 * 16 15 14 46 46 H 1.08993 * 109.47256 * 290.00303 * 17 15 14 47 47 H 1.09005 * 109.46995 * 50.00732 * 17 15 14 48 48 H 0.96992 * 120.00640 * 0.02562 * 20 18 17 49 49 H 0.96999 * 120.00248 * 179.97438 * 24 23 21 50 50 H 1.09003 * 109.58783 * 246.19913 * 29 8 6 51 51 H 1.08997 * 109.58917 * 6.62560 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 9 1.6699 2.0680 1.1955 6 6 3.5419 1.4443 -0.1238 7 8 4.2052 0.6672 0.5298 8 7 4.1480 2.3094 -0.9609 9 6 5.5988 2.2435 -1.1838 10 6 6.2022 3.6258 -0.9157 11 6 5.4812 4.6680 -1.7737 12 6 3.9989 4.7061 -1.3945 13 1 3.9001 4.9473 -0.3362 14 6 3.2855 5.7712 -2.2298 15 7 1.8912 5.8909 -1.7831 16 6 1.8207 6.4161 -0.4130 17 6 1.1121 6.7254 -2.7075 18 6 -0.3513 6.6273 -2.3608 19 8 -0.7098 5.9311 -1.4346 20 7 -1.2615 7.3140 -3.0795 21 6 -2.5927 7.2251 -2.7638 22 1 -2.9119 6.6053 -1.9390 23 6 -3.5312 7.9327 -3.5050 24 7 -3.1429 8.6866 -4.5089 25 14 -5.3449 7.8122 -3.0744 26 1 -5.5558 8.2857 -1.6829 27 1 -6.1326 8.6552 -4.0094 28 1 -5.7882 6.3996 -3.1892 29 6 3.3698 3.3324 -1.6724 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 6.0402 1.5141 -0.5046 36 1 5.7971 1.9521 -2.2153 37 1 6.0828 3.8767 0.1383 38 1 7.2623 3.6155 -1.1693 39 1 5.9249 5.6487 -1.6030 40 1 5.5798 4.4028 -2.8263 41 1 3.7905 6.7290 -2.1053 42 1 3.3067 5.4830 -3.2808 43 1 2.2850 7.4015 -0.3772 44 1 0.7774 6.4951 -0.1074 45 1 2.3473 5.7416 0.2623 46 1 1.4369 7.7623 -2.6225 47 1 1.2674 6.3784 -3.7291 48 1 -0.9748 7.8710 -3.8200 49 1 -3.7980 9.1802 -5.0266 50 1 3.3900 3.1280 -2.7429 51 1 2.3398 3.3218 -1.3158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713133454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:46 Heat of formation + Delta-G solvation = -121.590521 kcal Electronic energy + Delta-G solvation = -31621.298757 eV Core-core repulsion = 27276.866243 eV Total energy + Delta-G solvation = -4344.432514 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.85644 -40.41559 -38.80979 -37.89939 -36.16977 -34.16516 -33.91631 -33.21791 -31.82087 -31.23550 -28.13549 -27.84883 -26.76138 -25.44477 -24.82680 -23.35227 -22.29154 -21.13604 -20.38216 -19.33938 -19.13938 -17.96352 -17.83171 -16.84220 -16.19479 -16.14935 -15.66123 -15.32419 -15.18036 -14.88039 -14.78604 -14.58242 -14.45371 -13.96203 -13.89999 -13.71664 -13.59363 -13.23153 -13.15205 -13.06674 -12.87228 -12.38352 -12.24903 -12.15072 -12.09889 -11.85657 -11.54759 -11.39810 -11.36339 -11.25978 -11.20749 -11.05408 -10.96136 -10.88853 -10.64985 -10.63241 -10.45035 -10.22213 -9.77044 -9.47640 -8.89818 -8.46861 -7.99340 -7.88355 -6.42859 -3.83627 2.22455 2.63514 3.19189 3.25110 3.29322 3.88399 3.91448 4.00971 4.21538 4.35530 4.50895 4.54478 4.61629 4.69731 4.72975 4.77023 5.00467 5.05942 5.16750 5.22206 5.24324 5.27183 5.37223 5.40964 5.45605 5.49091 5.54689 5.55667 5.66367 5.67367 5.71413 5.72984 5.77625 5.80858 5.92418 5.94922 5.97537 5.98714 6.12291 6.14830 6.26031 6.27579 6.57209 7.06415 7.22939 7.34265 7.54056 7.81599 8.05231 8.60749 9.17164 9.53502 10.05289 10.74828 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.002881 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.123180 B = 9715.952928 C =11530.898786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.137 4.137 3 C 0.076 3.924 4 H 0.110 0.890 5 F -0.186 7.186 6 C 0.498 3.502 7 O -0.530 6.530 8 N -0.605 5.605 9 C 0.108 3.892 10 C -0.132 4.132 11 C -0.115 4.115 12 C -0.097 4.097 13 H 0.080 0.920 14 C 0.059 3.941 15 N -0.519 5.519 16 C 0.020 3.980 17 C 0.046 3.954 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.110 3.890 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.014 0.986 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.047 0.953 47 H 0.087 0.913 48 H 0.392 0.608 49 H 0.272 0.728 50 H 0.074 0.926 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.194 -9.709 1.914 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.037 3.963 4 H 0.128 0.872 5 F -0.167 7.167 6 C 0.284 3.716 7 O -0.406 6.406 8 N -0.339 5.339 9 C -0.014 4.014 10 C -0.171 4.171 11 C -0.153 4.153 12 C -0.116 4.116 13 H 0.098 0.902 14 C -0.070 4.070 15 N -0.243 5.243 16 C -0.128 4.128 17 C -0.086 4.086 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.012 4.012 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.094 0.906 43 H 0.032 0.968 44 H 0.115 0.885 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.225 0.775 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 16.963 -10.929 2.785 20.370 hybrid contribution -0.357 1.442 -0.402 1.539 sum 16.606 -9.487 2.384 19.273 Atomic orbital electron populations 1.21783 0.93787 1.02452 1.03224 1.21968 0.97630 0.93456 1.04496 1.21799 0.91548 0.96439 0.86509 0.87213 1.92899 1.92007 1.83899 1.47912 1.21075 0.90621 0.80536 0.79327 1.90686 1.66285 1.39941 1.43706 1.48264 1.08582 1.32594 1.44420 1.21643 0.79742 0.98211 1.01777 1.21889 0.99651 0.94595 1.00936 1.21571 0.94552 0.99262 0.99942 1.21602 0.94219 0.94487 1.01322 0.90172 1.22165 0.88710 0.96987 0.99143 1.61593 1.08972 1.51144 1.02548 1.22580 1.04795 0.96204 0.89205 1.21865 0.94093 0.95661 0.96949 1.19734 0.86593 0.84750 0.86040 1.90489 1.80734 1.43207 1.31606 1.41866 1.06471 1.41727 1.30051 1.19648 0.81331 1.26731 1.15139 0.87949 1.25248 1.00571 0.96266 0.95799 1.69601 1.35559 1.29704 1.19546 0.85935 0.81773 0.78357 0.78267 1.19917 1.21018 1.19874 1.22066 0.96351 0.85872 0.96872 0.91870 0.91711 0.91840 0.90107 0.89783 0.89064 0.91246 0.91455 0.90583 0.91448 0.91463 0.94539 0.90589 0.96795 0.88513 0.92129 0.93508 0.89451 0.77541 0.91840 0.90804 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.83 37.16 0.37 -1.22 16 2 C -0.14 -1.49 5.40 -26.73 -0.14 -1.63 16 3 C 0.08 0.95 3.19 -27.88 -0.09 0.86 16 4 H 0.11 1.27 5.70 -51.93 -0.30 0.98 16 5 F -0.19 -2.82 16.75 2.25 0.04 -2.79 16 6 C 0.50 6.59 7.04 -10.98 -0.08 6.51 16 7 O -0.53 -8.43 16.00 5.55 0.09 -8.34 16 8 N -0.61 -6.64 2.97 -172.51 -0.51 -7.15 16 9 C 0.11 0.98 6.44 -3.71 -0.02 0.96 16 10 C -0.13 -1.02 6.08 -26.61 -0.16 -1.18 16 11 C -0.12 -0.88 5.17 -26.69 -0.14 -1.02 16 12 C -0.10 -0.95 2.27 -90.27 -0.20 -1.16 16 13 H 0.08 0.91 6.33 -51.93 -0.33 0.58 16 14 C 0.06 0.64 4.35 -3.82 -0.02 0.62 16 15 N -0.52 -7.69 4.08 -244.37 -1.00 -8.68 16 16 C 0.02 0.31 8.97 60.07 0.54 0.85 16 17 C 0.05 0.75 5.45 -4.97 -0.03 0.73 16 18 C 0.44 9.93 7.47 -10.98 -0.08 9.85 16 19 O -0.58 -14.74 13.91 5.55 0.08 -14.66 16 20 N -0.56 -13.81 5.29 -10.96 -0.06 -13.87 16 21 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 22 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 25 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 C 0.11 1.15 5.32 -3.49 -0.02 1.13 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.72 7.94 -51.92 -0.41 0.31 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 35 H 0.09 0.94 7.00 -51.93 -0.36 0.57 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 42 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 43 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.10 1.86 5.82 -51.93 -0.30 1.56 16 45 H 0.06 0.85 6.37 -51.93 -0.33 0.52 16 46 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 47 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 48 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 49 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 50 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.10 1.27 5.22 -51.93 -0.27 1.00 16 LS Contribution 404.38 15.07 6.09 6.09 Total: -1.00 -31.76 404.38 -8.34 -40.10 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -8.45 Total: 9.46 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -0.32 Total: 7.52 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.84 Total: -53.11 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.17 Total: -23.00 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.76 -8.34 -40.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713133454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.488 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds