Wall clock time and date at job start Wed Apr 1 2020 02:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47376 * 2 1 4 4 H 1.09002 * 109.47252 * 55.00393 * 3 2 1 5 5 F 1.39893 * 109.47249 * 295.00206 * 3 2 1 6 6 C 1.50701 * 109.46868 * 175.00085 * 3 2 1 7 7 O 1.21274 * 120.00401 * 43.91016 * 6 3 2 8 8 N 1.34782 * 119.99984 * 223.90807 * 6 3 2 9 9 C 1.46924 * 120.62871 * 354.47914 * 8 6 3 10 10 C 1.53197 * 108.77501 * 233.60981 * 9 8 6 11 11 C 1.53041 * 109.31248 * 305.36536 * 10 9 8 12 12 C 1.53039 * 109.53760 * 61.36185 * 11 10 9 13 13 H 1.09009 * 109.49483 * 58.58862 * 12 11 10 14 14 C 1.52994 * 109.49825 * 178.68315 * 12 11 10 15 15 N 1.46899 * 109.47286 * 185.00302 * 14 12 11 16 16 C 1.46902 * 111.00001 * 66.04677 * 15 14 12 17 17 C 1.46898 * 111.00029 * 189.99953 * 15 14 12 18 18 C 1.50700 * 109.47026 * 169.99888 * 17 15 14 19 19 O 1.21284 * 120.00264 * 0.02562 * 18 17 15 20 20 N 1.34779 * 119.99891 * 179.97438 * 18 17 15 21 21 C 1.37096 * 119.99978 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00151 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99977 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99961 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00270 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47244 * 89.99843 * 25 23 21 27 27 H 1.48501 * 109.46959 * 210.00368 * 25 23 21 28 28 H 1.48501 * 109.46974 * 329.99992 * 25 23 21 29 29 C 1.46920 * 120.63186 * 174.48127 * 8 6 3 30 30 H 1.09006 * 109.46845 * 59.99354 * 1 2 3 31 31 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46642 * 299.99947 * 1 2 3 33 33 H 1.09000 * 109.46642 * 240.00053 * 2 1 3 34 34 H 1.09006 * 109.46845 * 120.00646 * 2 1 3 35 35 H 1.08996 * 109.58805 * 113.82372 * 9 8 6 36 36 H 1.09003 * 109.58972 * 353.39358 * 9 8 6 37 37 H 1.08995 * 109.49807 * 65.31628 * 10 9 8 38 38 H 1.09001 * 109.49729 * 185.38252 * 10 9 8 39 39 H 1.08998 * 109.45795 * 181.38835 * 11 10 9 40 40 H 1.09000 * 109.45673 * 301.35846 * 11 10 9 41 41 H 1.09002 * 109.47614 * 305.00602 * 14 12 11 42 42 H 1.09005 * 109.47313 * 65.00567 * 14 12 11 43 43 H 1.08999 * 109.46694 * 60.00214 * 16 15 14 44 44 H 1.08994 * 109.47076 * 179.97438 * 16 15 14 45 45 H 1.08991 * 109.46968 * 300.00178 * 16 15 14 46 46 H 1.09004 * 109.47846 * 290.00041 * 17 15 14 47 47 H 1.09004 * 109.47115 * 49.99916 * 17 15 14 48 48 H 0.96998 * 120.00211 * 0.02562 * 20 18 17 49 49 H 0.96997 * 119.99755 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.58767 * 6.60060 * 29 8 6 51 51 H 1.09002 * 109.58338 * 246.17943 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9815 0.8419 5 9 1.6700 2.0679 -1.1953 6 6 3.5420 1.4441 0.1238 7 8 4.2053 0.6673 -0.5300 8 7 4.1482 2.3090 0.9612 9 6 3.3708 3.3356 1.6685 10 6 3.9992 4.7057 1.3947 11 6 5.4815 4.6675 1.7736 12 6 6.2024 3.6252 0.9157 13 1 6.0828 3.8760 -0.1384 14 6 7.6901 3.6109 1.2723 15 7 8.4017 2.6980 0.3678 16 6 8.3781 3.2001 -1.0126 17 6 9.7804 2.4745 0.8231 18 6 10.3981 1.3559 0.0241 19 8 9.7535 0.8000 -0.8399 20 7 11.6672 0.9740 0.2689 21 6 12.2294 -0.0432 -0.4583 22 1 11.6554 -0.5382 -1.2276 23 6 13.5376 -0.4373 -0.2055 24 7 14.0766 -1.4120 -0.9029 25 14 14.5302 0.4183 1.1257 26 1 14.3318 -0.2833 2.4193 27 1 15.9702 0.3915 0.7637 28 1 14.0778 1.8271 1.2521 29 6 5.5989 2.2430 1.1840 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 3.3875 3.1334 2.7394 36 1 2.3418 3.3272 1.3089 37 1 3.9004 4.9463 0.3362 38 1 3.4906 5.4646 1.9893 39 1 5.9252 5.6483 1.6030 40 1 5.5804 4.4024 2.8263 41 1 8.0983 4.6163 1.1688 42 1 7.8139 3.2727 2.3011 43 1 8.8597 4.1771 -1.0520 44 1 8.9122 2.5056 -1.6610 45 1 7.3452 3.2904 -1.3486 46 1 10.3619 3.3856 0.6823 47 1 9.7752 2.2064 1.8796 48 1 12.1829 1.4188 0.9597 49 1 14.9900 -1.6869 -0.7266 50 1 6.0402 1.5136 0.5048 51 1 5.7973 1.9516 2.2154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713133455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:50 Heat of formation + Delta-G solvation = -111.998970 kcal Electronic energy + Delta-G solvation = -31070.072614 eV Core-core repulsion = 26726.056021 eV Total energy + Delta-G solvation = -4344.016593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.16262 -40.42996 -38.85791 -37.94037 -36.32209 -34.36274 -33.92749 -33.24824 -31.73945 -31.58930 -28.57522 -27.96589 -26.70844 -25.43312 -24.73643 -23.22189 -22.38967 -21.48368 -20.24174 -19.41221 -19.28152 -18.22029 -18.05847 -16.93307 -16.35199 -16.13365 -15.70054 -15.55248 -15.23148 -14.95762 -14.78376 -14.67920 -14.51128 -14.15085 -13.94990 -13.73673 -13.49024 -13.36404 -13.25792 -13.03912 -12.87777 -12.61996 -12.44119 -12.29032 -12.22739 -11.97012 -11.94883 -11.46634 -11.45210 -11.42313 -11.32479 -11.21995 -11.00182 -10.97207 -10.65889 -10.62659 -10.56804 -9.93653 -9.81743 -9.49628 -8.88437 -8.51476 -8.13473 -7.90689 -6.26845 -3.77921 2.23488 2.59666 3.04375 3.08853 3.16810 3.78948 3.87745 3.92098 4.10079 4.13331 4.13877 4.39600 4.51726 4.56402 4.65914 4.68853 4.85500 4.92465 4.96623 5.02489 5.09288 5.23241 5.24866 5.28787 5.31570 5.39052 5.50539 5.52061 5.56416 5.56981 5.63048 5.67733 5.74223 5.74768 5.79539 5.84508 5.90739 5.92787 6.01060 6.11565 6.17774 6.29256 6.58989 7.08344 7.20424 7.34289 7.63144 7.85458 8.19809 8.65109 9.00314 9.47173 9.89151 10.86470 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.015805 B = 0.002327 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.142006 B =12031.049538 C =13194.681057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.142 4.142 3 C 0.078 3.922 4 H 0.101 0.899 5 F -0.191 7.191 6 C 0.489 3.511 7 O -0.506 6.506 8 N -0.608 5.608 9 C 0.100 3.900 10 C -0.133 4.133 11 C -0.115 4.115 12 C -0.097 4.097 13 H 0.078 0.922 14 C 0.061 3.939 15 N -0.518 5.518 16 C 0.021 3.979 17 C 0.043 3.957 18 C 0.453 3.547 19 O -0.555 6.555 20 N -0.593 5.593 21 C -0.302 4.302 22 H 0.120 0.880 23 C 0.040 3.960 24 N -0.883 5.883 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.121 3.879 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.013 0.987 44 H 0.096 0.904 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.369 0.631 49 H 0.273 0.727 50 H 0.112 0.888 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.943 14.590 10.856 30.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.181 4.181 3 C 0.039 3.961 4 H 0.119 0.881 5 F -0.171 7.171 6 C 0.274 3.726 7 O -0.379 6.379 8 N -0.342 5.342 9 C -0.023 4.023 10 C -0.172 4.172 11 C -0.153 4.153 12 C -0.117 4.117 13 H 0.097 0.903 14 C -0.068 4.068 15 N -0.241 5.241 16 C -0.127 4.127 17 C -0.088 4.088 18 C 0.238 3.762 19 O -0.436 6.436 20 N -0.233 5.233 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.203 1.203 28 H -0.196 1.196 29 C 0.000 4.000 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.032 0.968 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.107 0.893 48 H 0.202 0.798 49 H 0.083 0.917 50 H 0.130 0.870 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.077 13.183 9.825 29.987 hybrid contribution 1.440 1.581 1.078 2.394 sum -23.638 14.764 10.903 29.926 Atomic orbital electron populations 1.21772 0.94156 1.02709 1.02341 1.22004 0.97170 0.93556 1.05322 1.21790 0.92428 0.96357 0.85527 0.88100 1.92880 1.92072 1.83868 1.48327 1.20949 0.90199 0.81368 0.80098 1.90812 1.65779 1.38883 1.42458 1.48237 1.09263 1.32182 1.44516 1.21886 0.95292 0.87843 0.97268 1.21895 0.96431 0.96229 1.02602 1.21566 0.94629 0.99212 0.99927 1.21528 0.94198 0.95046 1.00908 0.90326 1.22141 0.92823 0.94638 0.97179 1.61550 1.13985 1.46066 1.02528 1.22570 1.01892 0.98039 0.90153 1.21893 0.89281 0.97732 0.99897 1.19660 0.82478 0.86853 0.87167 1.90550 1.61287 1.57046 1.34728 1.42216 1.12062 1.34007 1.35034 1.19432 0.97060 1.09915 1.16690 0.86273 1.25038 0.96651 0.96724 0.97863 1.69627 1.15081 1.27597 1.39994 0.86670 0.80720 0.79580 0.82387 1.19650 1.20258 1.19592 1.21714 0.77444 0.98377 1.02475 0.91929 0.91620 0.92471 0.89237 0.89735 0.90800 0.89905 0.91270 0.90437 0.91478 0.91493 0.94673 0.90701 0.96819 0.88562 0.91983 0.93445 0.89344 0.79807 0.91684 0.86972 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.83 37.16 0.37 -0.59 16 2 C -0.14 -1.22 5.40 -26.73 -0.14 -1.36 16 3 C 0.08 0.73 3.19 -27.89 -0.09 0.64 16 4 H 0.10 0.59 5.71 -51.93 -0.30 0.29 16 5 F -0.19 -2.17 16.75 2.25 0.04 -2.13 16 6 C 0.49 6.25 7.04 -10.98 -0.08 6.18 16 7 O -0.51 -8.99 16.00 5.56 0.09 -8.90 16 8 N -0.61 -6.42 2.97 -172.77 -0.51 -6.94 16 9 C 0.10 0.64 6.18 -3.71 -0.02 0.62 16 10 C -0.13 -0.82 6.08 -26.61 -0.16 -0.98 16 11 C -0.12 -0.83 5.17 -26.69 -0.14 -0.96 16 12 C -0.10 -1.02 2.26 -90.51 -0.20 -1.22 16 13 H 0.08 0.96 6.34 -51.92 -0.33 0.63 16 14 C 0.06 0.70 4.35 -3.83 -0.02 0.68 16 15 N -0.52 -8.28 4.07 -244.37 -1.00 -9.27 16 16 C 0.02 0.35 8.97 60.07 0.54 0.89 16 17 C 0.04 0.73 5.45 -4.98 -0.03 0.71 16 18 C 0.45 10.46 7.47 -10.98 -0.08 10.38 16 19 O -0.55 -15.17 13.91 5.55 0.08 -15.10 16 20 N -0.59 -14.35 5.09 -10.96 -0.06 -14.41 16 21 C -0.30 -8.69 10.16 -14.93 -0.15 -8.84 16 22 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 23 C 0.04 1.11 5.50 -17.46 -0.10 1.01 16 24 N -0.88 -26.20 13.96 55.50 0.77 -25.43 16 25 Si 0.88 19.61 27.74 -169.99 -4.71 14.90 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 28 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 29 C 0.12 1.47 5.55 -3.72 -0.02 1.45 16 30 H 0.06 0.42 7.94 -51.93 -0.41 0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.94 8.04 -51.93 -0.42 0.52 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.40 5.44 -51.93 -0.28 0.12 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 42 H 0.07 0.77 7.93 -51.93 -0.41 0.36 16 43 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 44 H 0.10 1.97 5.82 -51.93 -0.30 1.66 16 45 H 0.06 0.96 6.37 -51.93 -0.33 0.63 16 46 H 0.05 0.72 8.12 -51.93 -0.42 0.29 16 47 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 48 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 49 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 50 H 0.11 1.87 6.78 -51.93 -0.35 1.52 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 401.22 15.07 6.05 6.05 Total: -1.00 -35.88 401.22 -7.99 -43.87 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -8.41 Total: 8.77 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -0.33 Total: 8.59 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.79 Total: -56.05 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.17 Total: -24.00 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.88 -7.99 -43.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713133455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.127 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds