Wall clock time and date at job start Wed Apr 1 2020 02:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47376 * 2 1 4 4 H 1.09002 * 109.47252 * 55.00393 * 3 2 1 5 5 F 1.39893 * 109.47249 * 295.00206 * 3 2 1 6 6 C 1.50701 * 109.46868 * 175.00085 * 3 2 1 7 7 O 1.21274 * 120.00401 * 43.91016 * 6 3 2 8 8 N 1.34782 * 119.99984 * 223.90807 * 6 3 2 9 9 C 1.46924 * 120.62871 * 354.47914 * 8 6 3 10 10 C 1.53197 * 108.77501 * 233.60981 * 9 8 6 11 11 C 1.53041 * 109.31248 * 305.36536 * 10 9 8 12 12 C 1.53039 * 109.53760 * 61.36185 * 11 10 9 13 13 H 1.09009 * 109.49483 * 58.58862 * 12 11 10 14 14 C 1.52994 * 109.49825 * 178.68315 * 12 11 10 15 15 N 1.46899 * 109.47286 * 185.00302 * 14 12 11 16 16 C 1.46902 * 111.00001 * 66.04677 * 15 14 12 17 17 C 1.46898 * 111.00029 * 189.99953 * 15 14 12 18 18 C 1.50700 * 109.47026 * 169.99888 * 17 15 14 19 19 O 1.21284 * 120.00264 * 0.02562 * 18 17 15 20 20 N 1.34779 * 119.99891 * 179.97438 * 18 17 15 21 21 C 1.37096 * 119.99978 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00151 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99977 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99961 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00270 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47244 * 89.99843 * 25 23 21 27 27 H 1.48501 * 109.46959 * 210.00368 * 25 23 21 28 28 H 1.48501 * 109.46974 * 329.99992 * 25 23 21 29 29 C 1.46920 * 120.63186 * 174.48127 * 8 6 3 30 30 H 1.09006 * 109.46845 * 59.99354 * 1 2 3 31 31 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46642 * 299.99947 * 1 2 3 33 33 H 1.09000 * 109.46642 * 240.00053 * 2 1 3 34 34 H 1.09006 * 109.46845 * 120.00646 * 2 1 3 35 35 H 1.08996 * 109.58805 * 113.82372 * 9 8 6 36 36 H 1.09003 * 109.58972 * 353.39358 * 9 8 6 37 37 H 1.08995 * 109.49807 * 65.31628 * 10 9 8 38 38 H 1.09001 * 109.49729 * 185.38252 * 10 9 8 39 39 H 1.08998 * 109.45795 * 181.38835 * 11 10 9 40 40 H 1.09000 * 109.45673 * 301.35846 * 11 10 9 41 41 H 1.09002 * 109.47614 * 305.00602 * 14 12 11 42 42 H 1.09005 * 109.47313 * 65.00567 * 14 12 11 43 43 H 1.08999 * 109.46694 * 60.00214 * 16 15 14 44 44 H 1.08994 * 109.47076 * 179.97438 * 16 15 14 45 45 H 1.08991 * 109.46968 * 300.00178 * 16 15 14 46 46 H 1.09004 * 109.47846 * 290.00041 * 17 15 14 47 47 H 1.09004 * 109.47115 * 49.99916 * 17 15 14 48 48 H 0.96998 * 120.00211 * 0.02562 * 20 18 17 49 49 H 0.96997 * 119.99755 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.58767 * 6.60060 * 29 8 6 51 51 H 1.09002 * 109.58338 * 246.17943 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9815 0.8419 5 9 1.6700 2.0679 -1.1953 6 6 3.5420 1.4441 0.1238 7 8 4.2053 0.6673 -0.5300 8 7 4.1482 2.3090 0.9612 9 6 3.3708 3.3356 1.6685 10 6 3.9992 4.7057 1.3947 11 6 5.4815 4.6675 1.7736 12 6 6.2024 3.6252 0.9157 13 1 6.0828 3.8760 -0.1384 14 6 7.6901 3.6109 1.2723 15 7 8.4017 2.6980 0.3678 16 6 8.3781 3.2001 -1.0126 17 6 9.7804 2.4745 0.8231 18 6 10.3981 1.3559 0.0241 19 8 9.7535 0.8000 -0.8399 20 7 11.6672 0.9740 0.2689 21 6 12.2294 -0.0432 -0.4583 22 1 11.6554 -0.5382 -1.2276 23 6 13.5376 -0.4373 -0.2055 24 7 14.0766 -1.4120 -0.9029 25 14 14.5302 0.4183 1.1257 26 1 14.3318 -0.2833 2.4193 27 1 15.9702 0.3915 0.7637 28 1 14.0778 1.8271 1.2521 29 6 5.5989 2.2430 1.1840 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 3.3875 3.1334 2.7394 36 1 2.3418 3.3272 1.3089 37 1 3.9004 4.9463 0.3362 38 1 3.4906 5.4646 1.9893 39 1 5.9252 5.6483 1.6030 40 1 5.5804 4.4024 2.8263 41 1 8.0983 4.6163 1.1688 42 1 7.8139 3.2727 2.3011 43 1 8.8597 4.1771 -1.0520 44 1 8.9122 2.5056 -1.6610 45 1 7.3452 3.2904 -1.3486 46 1 10.3619 3.3856 0.6823 47 1 9.7752 2.2064 1.8796 48 1 12.1829 1.4188 0.9597 49 1 14.9900 -1.6869 -0.7266 50 1 6.0402 1.5136 0.5048 51 1 5.7973 1.9516 2.2154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713133455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:49 Heat of formation + Delta-G solvation = -139.345872 kcal Electronic energy + Delta-G solvation = -31071.258464 eV Core-core repulsion = 26726.056021 eV Total energy + Delta-G solvation = -4345.202444 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.00759 -41.33247 -40.49940 -39.08673 -37.53627 -35.94833 -35.07893 -34.14852 -33.75575 -32.46131 -29.69795 -29.14225 -27.73321 -26.51031 -26.14807 -24.34795 -23.07881 -22.40617 -21.25640 -21.12278 -20.23241 -20.12305 -18.89990 -17.82168 -17.75797 -17.20629 -16.85415 -16.66579 -16.51479 -16.41203 -15.80781 -15.64654 -15.43311 -15.35270 -15.12687 -14.91611 -14.76432 -14.45140 -14.25381 -14.13540 -14.01466 -13.82867 -13.67696 -13.38711 -13.15289 -13.03745 -13.00224 -12.78247 -12.63705 -12.52079 -12.41225 -12.06413 -12.01767 -11.97304 -11.93974 -11.66894 -11.51216 -11.47314 -11.40591 -10.76983 -10.36114 -10.23757 -9.74107 -9.16573 -8.41507 -6.02569 1.26282 1.28812 1.35508 1.44148 1.77270 1.96978 2.22926 2.62936 3.13121 3.13896 3.24676 3.43352 3.48314 3.74672 3.79625 3.88913 3.97079 4.09331 4.11919 4.21575 4.33283 4.36122 4.38919 4.42558 4.46015 4.50298 4.57470 4.64065 4.70358 4.72978 4.75187 4.77789 4.93563 4.93955 5.00924 5.06993 5.11210 5.12590 5.20889 5.31116 5.31548 5.44779 5.49804 5.53310 5.90439 6.01897 6.21987 6.23218 6.60313 6.89040 6.93097 7.40162 7.99497 8.76644 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.015805 B = 0.002327 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.142006 B =12031.049538 C =13194.681057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.144 4.144 3 C 0.083 3.917 4 H 0.149 0.851 5 F -0.203 7.203 6 C 0.477 3.523 7 O -0.575 6.575 8 N -0.602 5.602 9 C 0.091 3.909 10 C -0.131 4.131 11 C -0.108 4.108 12 C -0.091 4.091 13 H 0.052 0.948 14 C 0.063 3.937 15 N -0.544 5.544 16 C 0.032 3.968 17 C 0.057 3.943 18 C 0.448 3.552 19 O -0.609 6.609 20 N -0.592 5.592 21 C -0.328 4.328 22 H 0.050 0.950 23 C -0.019 4.019 24 N -0.937 5.937 25 Si 0.969 3.031 26 H -0.256 1.256 27 H -0.275 1.275 28 H -0.230 1.230 29 C 0.122 3.878 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.125 0.875 48 H 0.390 0.610 49 H 0.279 0.721 50 H 0.054 0.946 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.085 18.898 15.890 35.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C 0.045 3.955 4 H 0.166 0.834 5 F -0.184 7.184 6 C 0.263 3.737 7 O -0.454 6.454 8 N -0.334 5.334 9 C -0.030 4.030 10 C -0.169 4.169 11 C -0.146 4.146 12 C -0.111 4.111 13 H 0.071 0.929 14 C -0.064 4.064 15 N -0.269 5.269 16 C -0.116 4.116 17 C -0.074 4.074 18 C 0.236 3.764 19 O -0.492 6.492 20 N -0.235 5.235 21 C -0.457 4.457 22 H 0.068 0.932 23 C -0.217 4.217 24 N -0.578 5.578 25 Si 0.789 3.211 26 H -0.180 1.180 27 H -0.200 1.200 28 H -0.153 1.153 29 C 0.000 4.000 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.129 0.871 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.143 0.857 48 H 0.226 0.774 49 H 0.088 0.912 50 H 0.073 0.927 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -26.264 17.562 14.902 34.932 hybrid contribution 1.702 0.180 -0.582 1.808 sum -24.562 17.742 14.320 33.513 Atomic orbital electron populations 1.21754 0.91880 1.03478 1.03247 1.22024 0.99017 0.93030 1.04151 1.21991 0.89888 0.97349 0.86307 0.83395 1.92853 1.91909 1.84097 1.49564 1.21727 0.91742 0.80736 0.79496 1.90783 1.67497 1.41796 1.45344 1.48412 1.09031 1.32237 1.43711 1.22314 0.95632 0.86638 0.98418 1.21919 0.96088 0.96668 1.02230 1.21552 0.94757 0.98238 1.00045 1.21482 0.94250 0.94979 1.00341 0.92912 1.22276 0.92501 0.94678 0.96953 1.61453 1.13998 1.48573 1.02838 1.22313 1.01350 0.97610 0.90307 1.21831 0.89668 0.95846 1.00076 1.21044 0.81693 0.87269 0.86378 1.90547 1.62534 1.59064 1.37101 1.42025 1.12785 1.33364 1.35307 1.18975 0.97686 1.12043 1.16979 0.93184 1.26183 0.97398 0.97202 1.00922 1.69823 1.15927 1.29636 1.42422 0.85311 0.77838 0.80108 0.77890 1.17987 1.20020 1.15301 1.21553 0.78541 0.98266 1.01661 0.92533 0.91015 0.89949 0.92443 0.89080 0.87937 0.87948 0.92992 0.87074 0.90252 0.89475 0.92478 0.88477 0.94476 0.93553 0.92012 0.90251 0.85746 0.77444 0.91169 0.92688 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.83 71.98 0.71 -0.91 16 2 C -0.14 -2.49 5.40 30.59 0.17 -2.33 16 3 C 0.08 1.49 3.19 29.85 0.10 1.59 16 4 H 0.15 1.20 5.71 -2.39 -0.01 1.19 16 5 F -0.20 -4.60 16.75 44.97 0.75 -3.85 16 6 C 0.48 12.67 7.04 87.66 0.62 13.29 16 7 O -0.58 -22.65 16.00 -3.01 -0.05 -22.70 16 8 N -0.60 -12.23 2.97 -818.92 -2.43 -14.66 16 9 C 0.09 0.81 6.18 86.36 0.53 1.35 16 10 C -0.13 -1.06 6.08 30.67 0.19 -0.87 16 11 C -0.11 -1.08 5.17 30.62 0.16 -0.92 16 12 C -0.09 -1.74 2.26 -10.72 -0.02 -1.76 16 13 H 0.05 1.29 6.34 -2.38 -0.02 1.27 16 14 C 0.06 1.26 4.35 86.30 0.38 1.63 16 15 N -0.54 -17.05 4.07 -927.06 -3.78 -20.83 16 16 C 0.03 1.10 8.97 127.69 1.15 2.25 16 17 C 0.06 1.79 5.45 85.56 0.47 2.25 16 18 C 0.45 21.22 7.47 87.66 0.66 21.87 16 19 O -0.61 -35.90 13.91 -3.04 -0.04 -35.94 16 20 N -0.59 -28.92 5.09 -306.99 -1.56 -30.48 16 21 C -0.33 -19.90 10.16 84.04 0.85 -19.05 16 22 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 23 C -0.02 -1.08 5.50 84.93 0.47 -0.62 16 24 N -0.94 -58.17 13.96 21.66 0.30 -57.87 16 25 Si 0.97 39.54 27.74 68.60 1.90 41.44 16 26 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 27 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 28 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 29 C 0.12 2.95 5.55 86.36 0.48 3.43 16 30 H 0.06 0.70 7.94 -2.38 -0.02 0.68 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 1.35 8.04 -2.39 -0.02 1.33 16 34 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.10 0.53 5.44 -2.39 -0.01 0.51 16 37 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 0.93 8.12 -2.39 -0.02 0.92 16 42 H 0.10 1.54 7.93 -2.38 -0.02 1.52 16 43 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.05 2.04 5.82 -2.39 -0.01 2.03 16 45 H 0.06 2.05 6.37 -2.39 -0.02 2.03 16 46 H 0.08 2.06 8.12 -2.39 -0.02 2.04 16 47 H 0.12 3.08 7.93 -2.38 -0.02 3.06 16 48 H 0.39 15.55 5.76 -92.71 -0.53 15.02 16 49 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 50 H 0.05 2.00 6.78 -2.39 -0.02 1.98 16 51 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -92.73 401.22 2.32 -90.41 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.34 Total: 33.28 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 6.88 Total: 21.19 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -7.47 Total: -123.84 kcal Atomic # 8 Polarization: -58.54 SS G_CDS: -0.09 Total: -58.64 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.75 Total: -3.85 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 1.90 Total: 41.44 kcal Total: -92.73 2.32 -90.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713133455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.933 kcal (2) G-P(sol) polarization free energy of solvation -92.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds