Wall clock time and date at job start Wed Apr 1 2020 02:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47147 * 2 1 4 4 N 1.46495 * 109.46917 * 175.00741 * 3 2 1 5 5 C 1.34777 * 120.00091 * 271.48639 * 4 3 2 6 6 O 1.21283 * 119.99852 * 180.02562 * 5 4 3 7 7 C 1.50696 * 119.99870 * 0.02562 * 5 4 3 8 8 H 1.09000 * 115.55211 * 34.41671 * 7 5 4 9 9 C 1.53002 * 117.49868 * 248.74620 * 7 5 4 10 10 C 1.53005 * 117.50012 * 180.08659 * 7 5 4 11 11 H 1.09005 * 117.49576 * 359.97438 * 10 7 5 12 12 C 1.50701 * 117.49922 * 215.00474 * 10 7 5 13 13 C 1.38649 * 120.78541 * 299.71818 * 12 10 7 14 14 C 1.38211 * 119.15621 * 179.75941 * 13 12 10 15 15 N 1.31869 * 120.76469 * 0.52623 * 14 13 12 16 16 C 1.31866 * 121.72776 * 359.74426 * 15 14 13 17 17 C 1.38209 * 120.76655 * 359.97438 * 16 15 14 18 18 C 1.46503 * 120.00055 * 91.49297 * 4 3 2 19 19 H 1.08997 * 110.64365 * 0.48810 * 18 4 3 20 20 C 1.55164 * 110.87037 * 237.24597 * 18 4 3 21 21 C 1.54905 * 101.58099 * 206.06095 * 20 18 4 22 22 N 1.47434 * 104.83350 * 37.01088 * 21 20 18 23 23 C 1.36928 * 125.64825 * 156.13709 * 22 21 20 24 24 H 1.08004 * 120.00250 * 324.42908 * 23 22 21 25 25 C 1.38817 * 120.00082 * 144.42987 * 23 22 21 26 26 N 1.31620 * 120.00242 * 160.63712 * 25 23 22 27 27 Si 1.86797 * 119.99756 * 340.64712 * 25 23 22 28 28 H 1.48502 * 109.47493 * 89.90951 * 27 25 23 29 29 H 1.48508 * 109.46829 * 209.90886 * 27 25 23 30 30 H 1.48504 * 109.47223 * 329.90367 * 27 25 23 31 31 C 1.47019 * 108.69867 * 335.87030 * 22 21 20 32 32 H 1.08995 * 109.47612 * 300.00352 * 1 2 3 33 33 H 1.09004 * 109.46888 * 60.00106 * 1 2 3 34 34 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47412 * 239.99587 * 2 1 3 36 36 H 1.08996 * 109.47043 * 119.99669 * 2 1 3 37 37 H 1.09001 * 109.47116 * 55.00553 * 3 2 1 38 38 H 1.09003 * 109.46923 * 295.00752 * 3 2 1 39 39 H 1.08993 * 117.50294 * 359.97438 * 9 7 5 40 40 H 1.08997 * 117.49835 * 145.02052 * 9 7 5 41 41 H 1.07993 * 120.42731 * 359.97438 * 13 12 10 42 42 H 1.07997 * 119.61614 * 180.29329 * 14 13 12 43 43 H 1.07998 * 119.61925 * 179.97438 * 16 15 14 44 44 H 1.07993 * 120.42208 * 180.02562 * 17 16 15 45 45 H 1.09001 * 111.00267 * 324.13751 * 20 18 4 46 46 H 1.08994 * 111.00330 * 87.98469 * 20 18 4 47 47 H 1.09002 * 110.37126 * 278.17284 * 21 20 18 48 48 H 1.08998 * 110.36976 * 155.84631 * 21 20 18 49 49 H 0.96994 * 120.00326 * 179.97438 * 26 25 23 50 50 H 1.09000 * 109.88477 * 120.47918 * 31 22 21 51 51 H 1.09005 * 109.88369 * 241.48813 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4442 0.1202 5 6 4.0759 1.4486 1.3387 6 8 5.2846 1.4504 1.4382 7 6 3.2178 1.4511 2.5776 8 1 2.2840 0.8939 2.5038 9 6 3.2184 2.7185 3.4347 10 6 3.9312 1.4581 3.9311 11 1 5.0213 1.4604 3.9254 12 6 3.2890 0.6940 5.0601 13 6 2.0181 1.0223 5.5066 14 6 1.4593 0.2958 6.5412 15 7 2.1244 -0.6916 7.1082 16 6 3.3368 -1.0279 6.7132 17 6 3.9574 -0.3504 5.6808 18 6 4.3342 1.4413 -1.0842 19 1 3.7145 1.4467 -1.9808 20 6 5.2949 0.2228 -1.0883 21 6 6.4569 0.7460 -1.9689 22 7 6.5875 2.1710 -1.6140 23 6 7.7177 2.9298 -1.7615 24 1 8.6899 2.4872 -1.6026 25 6 7.6139 4.2681 -2.1154 26 7 8.6197 5.0875 -1.8934 27 14 6.0465 4.9061 -2.9065 28 1 5.1110 5.3678 -1.8497 29 1 6.3733 6.0400 -3.8081 30 1 5.4094 3.8179 -3.6908 31 6 5.3013 2.6439 -1.0815 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 1.6054 1.9815 0.8419 38 1 1.7515 1.9299 -0.9314 39 1 3.8396 3.5503 3.1028 40 1 2.2850 2.9948 3.9251 41 1 1.4703 1.8331 5.0496 42 1 0.4679 0.5421 6.8916 43 1 3.8507 -1.8422 7.2022 44 1 4.9502 -0.6307 5.3615 45 1 5.6407 -0.0053 -0.0801 46 1 4.8208 -0.6469 -1.5431 47 1 6.2102 0.6392 -3.0253 48 1 7.3783 0.2116 -1.7378 49 1 8.5473 6.0225 -2.1410 50 1 5.4338 3.0107 -0.0637 51 1 4.9083 3.4399 -1.7140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713716396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:41 Heat of formation + Delta-G solvation = 60.284552 kcal Electronic energy + Delta-G solvation = -30782.349754 eV Core-core repulsion = 26876.573160 eV Total energy + Delta-G solvation = -3905.776594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.86109 -40.11672 -37.83574 -36.32115 -36.08337 -33.05276 -32.28323 -31.98108 -31.44581 -29.57421 -28.06678 -26.31458 -25.19318 -24.57863 -23.83232 -23.37207 -21.88292 -21.39360 -20.69871 -20.22008 -18.69809 -17.64837 -17.11033 -16.76304 -16.43201 -16.06251 -15.77450 -15.43493 -14.91270 -14.84283 -14.57493 -14.25795 -14.10038 -13.89746 -13.83303 -13.37225 -12.98272 -12.79923 -12.71316 -12.45460 -12.39815 -12.28907 -12.22355 -11.87344 -11.82485 -11.60949 -11.32659 -11.24984 -11.04217 -10.97228 -10.89316 -10.71749 -10.50879 -10.30955 -10.01153 -9.75811 -9.59272 -9.50512 -9.43030 -9.22025 -8.47967 -8.41105 -6.71158 -5.92232 -3.31537 0.85318 0.90375 2.58153 2.95413 3.35723 3.44043 3.46487 3.52622 3.80302 4.07558 4.18643 4.40731 4.52349 4.53842 4.58832 4.66749 4.70225 4.79609 4.81688 4.92127 4.96185 5.03538 5.11466 5.17255 5.25142 5.29765 5.37479 5.38895 5.42604 5.48174 5.53709 5.55366 5.63526 5.66597 5.70492 5.75881 5.79464 5.86844 5.93992 6.03882 6.14312 6.16148 6.33815 6.40801 6.41676 6.59514 6.72279 6.94449 7.09660 7.53035 7.69249 8.00210 8.37847 8.41871 8.93575 9.74395 10.33193 11.24702 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.003128 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.850539 B = 8949.978142 C = 9840.027568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.108 3.892 4 N -0.602 5.602 5 C 0.536 3.464 6 O -0.504 6.504 7 C -0.170 4.170 8 H 0.124 0.876 9 C -0.142 4.142 10 C -0.094 4.094 11 H 0.134 0.866 12 C -0.003 4.003 13 C -0.175 4.175 14 C 0.099 3.901 15 N -0.492 5.492 16 C 0.100 3.900 17 C -0.163 4.163 18 C 0.134 3.866 19 H 0.090 0.910 20 C -0.141 4.141 21 C 0.134 3.866 22 N -0.600 5.600 23 C -0.238 4.238 24 H 0.083 0.917 25 C 0.030 3.970 26 N -0.906 5.906 27 Si 0.888 3.112 28 H -0.288 1.288 29 H -0.302 1.302 30 H -0.274 1.274 31 C 0.120 3.880 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.138 0.862 45 H 0.086 0.914 46 H 0.060 0.940 47 H 0.022 0.978 48 H 0.048 0.952 49 H 0.263 0.737 50 H 0.052 0.948 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.238 -10.798 11.986 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C -0.015 4.015 4 N -0.335 5.335 5 C 0.323 3.677 6 O -0.378 6.378 7 C -0.192 4.192 8 H 0.142 0.858 9 C -0.179 4.179 10 C -0.113 4.113 11 H 0.152 0.848 12 C -0.011 4.011 13 C -0.195 4.195 14 C -0.058 4.058 15 N -0.201 5.201 16 C -0.057 4.057 17 C -0.182 4.182 18 C 0.031 3.969 19 H 0.108 0.892 20 C -0.180 4.180 21 C 0.008 3.992 22 N -0.327 5.327 23 C -0.366 4.366 24 H 0.100 0.900 25 C -0.170 4.170 26 N -0.549 5.549 27 Si 0.720 3.280 28 H -0.216 1.216 29 H -0.230 1.230 30 H -0.200 1.200 31 C -0.005 4.005 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.153 0.847 42 H 0.172 0.828 43 H 0.174 0.826 44 H 0.156 0.844 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.039 0.961 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -19.796 -11.038 12.688 25.975 hybrid contribution -0.639 0.989 -1.323 1.771 sum -20.435 -10.049 11.365 25.451 Atomic orbital electron populations 1.21707 0.95168 1.01930 1.01941 1.22007 0.95984 0.97316 1.02937 1.21682 0.79829 0.96757 1.03237 1.47827 1.06242 1.73773 1.05613 1.19480 0.88049 0.76779 0.83377 1.90820 1.13772 1.47128 1.86073 1.22446 1.01609 1.04751 0.90346 0.85833 1.23166 1.02884 0.91281 1.00592 1.21130 1.00269 0.99367 0.90486 0.84831 1.19564 0.93424 0.93919 0.94156 1.22067 0.96093 1.01941 0.99368 1.22730 0.99453 0.91070 0.92504 1.67670 1.08525 1.15344 1.28536 1.22774 0.90971 0.98135 0.93772 1.22075 1.01947 0.96530 0.97686 1.22156 0.91729 0.97578 0.85446 0.89194 1.23129 0.96803 0.95742 1.02360 1.21617 0.95758 0.86880 0.94905 1.44423 1.08984 1.06969 1.72342 1.18552 0.84924 0.92022 1.41072 0.89990 1.25406 0.96607 0.96529 0.98417 1.69830 1.32208 1.04147 1.48716 0.86738 0.84100 0.77430 0.79780 1.21569 1.23040 1.20009 1.21825 0.86908 0.93428 0.98369 0.92644 0.92469 0.92507 0.91343 0.91763 0.90324 0.90208 0.87150 0.87446 0.84703 0.82804 0.82643 0.84421 0.89519 0.92172 0.96051 0.93373 0.92756 0.92966 0.96436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.14 -1.20 6.08 -26.73 -0.16 -1.36 16 3 C 0.11 1.07 5.03 -4.04 -0.02 1.05 16 4 N -0.60 -8.58 2.54 -164.02 -0.42 -8.99 16 5 C 0.54 8.24 6.56 -10.99 -0.07 8.17 16 6 O -0.50 -10.10 12.61 5.55 0.07 -10.03 16 7 C -0.17 -1.87 4.45 -91.77 -0.41 -2.28 16 8 H 0.12 1.11 6.42 -51.93 -0.33 0.77 16 9 C -0.14 -1.39 9.59 -26.69 -0.26 -1.65 16 10 C -0.09 -1.02 5.59 -91.73 -0.51 -1.54 16 11 H 0.13 1.72 7.67 -51.93 -0.40 1.32 16 12 C 0.00 -0.03 5.64 -104.32 -0.59 -0.61 16 13 C -0.18 -1.45 9.39 -39.44 -0.37 -1.82 16 14 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16 15 N -0.49 -5.09 10.36 -13.25 -0.14 -5.23 16 16 C 0.10 0.92 11.18 -17.55 -0.20 0.73 16 17 C -0.16 -1.54 9.84 -39.44 -0.39 -1.93 16 18 C 0.13 2.33 3.43 -66.09 -0.23 2.11 16 19 H 0.09 1.40 7.85 -51.93 -0.41 0.99 16 20 C -0.14 -2.48 6.42 -24.58 -0.16 -2.64 16 21 C 0.13 2.84 7.23 -2.53 -0.02 2.82 16 22 N -0.60 -15.46 2.95 -170.07 -0.50 -15.96 16 23 C -0.24 -7.12 10.49 -15.06 -0.16 -7.28 16 24 H 0.08 2.62 8.06 -52.48 -0.42 2.20 16 25 C 0.03 0.91 5.44 -17.43 -0.09 0.82 16 26 N -0.91 -28.85 13.97 55.49 0.78 -28.07 16 27 Si 0.89 23.42 24.76 -169.99 -4.21 19.21 16 28 H -0.29 -7.43 6.91 56.52 0.39 -7.04 16 29 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 30 H -0.27 -7.03 7.09 56.52 0.40 -6.63 16 31 C 0.12 2.78 5.32 -3.07 -0.02 2.76 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.57 7.42 -51.93 -0.39 0.19 16 37 H 0.08 0.65 6.73 -51.93 -0.35 0.30 16 38 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 39 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.11 0.75 6.26 -51.93 -0.32 0.42 16 41 H 0.14 0.82 6.16 -52.49 -0.32 0.50 16 42 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 45 H 0.09 1.67 6.02 -51.93 -0.31 1.36 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 50 H 0.05 1.32 6.08 -51.93 -0.32 1.01 16 51 H 0.02 0.44 3.67 -51.93 -0.19 0.25 16 LS Contribution 398.94 15.07 6.01 6.01 Total: -1.00 -36.15 398.94 -9.86 -46.00 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.97 Total: -0.34 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -3.48 Total: -2.60 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.28 Total: -58.26 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.21 Total: 19.21 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.15 -9.86 -46.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713716396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.286 kcal (2) G-P(sol) polarization free energy of solvation -36.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds