Wall clock time and date at job start Wed Apr 1 2020 02:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47147 * 2 1 4 4 N 1.46495 * 109.46917 * 175.00741 * 3 2 1 5 5 C 1.34777 * 120.00091 * 271.48639 * 4 3 2 6 6 O 1.21283 * 119.99852 * 180.02562 * 5 4 3 7 7 C 1.50696 * 119.99870 * 0.02562 * 5 4 3 8 8 H 1.09000 * 115.55211 * 34.41671 * 7 5 4 9 9 C 1.53002 * 117.49868 * 248.74620 * 7 5 4 10 10 C 1.53005 * 117.50012 * 180.08659 * 7 5 4 11 11 H 1.09005 * 117.49576 * 359.97438 * 10 7 5 12 12 C 1.50701 * 117.49922 * 215.00474 * 10 7 5 13 13 C 1.38649 * 120.78541 * 299.71818 * 12 10 7 14 14 C 1.38211 * 119.15621 * 179.75941 * 13 12 10 15 15 N 1.31869 * 120.76469 * 0.52623 * 14 13 12 16 16 C 1.31866 * 121.72776 * 359.74426 * 15 14 13 17 17 C 1.38209 * 120.76655 * 359.97438 * 16 15 14 18 18 C 1.46503 * 120.00055 * 91.49297 * 4 3 2 19 19 H 1.08997 * 110.64365 * 0.48810 * 18 4 3 20 20 C 1.55164 * 110.87037 * 237.24597 * 18 4 3 21 21 C 1.54905 * 101.58099 * 206.06095 * 20 18 4 22 22 N 1.47434 * 104.83350 * 37.01088 * 21 20 18 23 23 C 1.36928 * 125.64825 * 156.13709 * 22 21 20 24 24 H 1.08004 * 120.00250 * 324.42908 * 23 22 21 25 25 C 1.38817 * 120.00082 * 144.42987 * 23 22 21 26 26 N 1.31620 * 120.00242 * 160.63712 * 25 23 22 27 27 Si 1.86797 * 119.99756 * 340.64712 * 25 23 22 28 28 H 1.48502 * 109.47493 * 89.90951 * 27 25 23 29 29 H 1.48508 * 109.46829 * 209.90886 * 27 25 23 30 30 H 1.48504 * 109.47223 * 329.90367 * 27 25 23 31 31 C 1.47019 * 108.69867 * 335.87030 * 22 21 20 32 32 H 1.08995 * 109.47612 * 300.00352 * 1 2 3 33 33 H 1.09004 * 109.46888 * 60.00106 * 1 2 3 34 34 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47412 * 239.99587 * 2 1 3 36 36 H 1.08996 * 109.47043 * 119.99669 * 2 1 3 37 37 H 1.09001 * 109.47116 * 55.00553 * 3 2 1 38 38 H 1.09003 * 109.46923 * 295.00752 * 3 2 1 39 39 H 1.08993 * 117.50294 * 359.97438 * 9 7 5 40 40 H 1.08997 * 117.49835 * 145.02052 * 9 7 5 41 41 H 1.07993 * 120.42731 * 359.97438 * 13 12 10 42 42 H 1.07997 * 119.61614 * 180.29329 * 14 13 12 43 43 H 1.07998 * 119.61925 * 179.97438 * 16 15 14 44 44 H 1.07993 * 120.42208 * 180.02562 * 17 16 15 45 45 H 1.09001 * 111.00267 * 324.13751 * 20 18 4 46 46 H 1.08994 * 111.00330 * 87.98469 * 20 18 4 47 47 H 1.09002 * 110.37126 * 278.17284 * 21 20 18 48 48 H 1.08998 * 110.36976 * 155.84631 * 21 20 18 49 49 H 0.96994 * 120.00326 * 179.97438 * 26 25 23 50 50 H 1.09000 * 109.88477 * 120.47918 * 31 22 21 51 51 H 1.09005 * 109.88369 * 241.48813 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4442 0.1202 5 6 4.0759 1.4486 1.3387 6 8 5.2846 1.4504 1.4382 7 6 3.2178 1.4511 2.5776 8 1 2.2840 0.8939 2.5038 9 6 3.2184 2.7185 3.4347 10 6 3.9312 1.4581 3.9311 11 1 5.0213 1.4604 3.9254 12 6 3.2890 0.6940 5.0601 13 6 2.0181 1.0223 5.5066 14 6 1.4593 0.2958 6.5412 15 7 2.1244 -0.6916 7.1082 16 6 3.3368 -1.0279 6.7132 17 6 3.9574 -0.3504 5.6808 18 6 4.3342 1.4413 -1.0842 19 1 3.7145 1.4467 -1.9808 20 6 5.2949 0.2228 -1.0883 21 6 6.4569 0.7460 -1.9689 22 7 6.5875 2.1710 -1.6140 23 6 7.7177 2.9298 -1.7615 24 1 8.6899 2.4872 -1.6026 25 6 7.6139 4.2681 -2.1154 26 7 8.6197 5.0875 -1.8934 27 14 6.0465 4.9061 -2.9065 28 1 5.1110 5.3678 -1.8497 29 1 6.3733 6.0400 -3.8081 30 1 5.4094 3.8179 -3.6908 31 6 5.3013 2.6439 -1.0815 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 1.6054 1.9815 0.8419 38 1 1.7515 1.9299 -0.9314 39 1 3.8396 3.5503 3.1028 40 1 2.2850 2.9948 3.9251 41 1 1.4703 1.8331 5.0496 42 1 0.4679 0.5421 6.8916 43 1 3.8507 -1.8422 7.2022 44 1 4.9502 -0.6307 5.3615 45 1 5.6407 -0.0053 -0.0801 46 1 4.8208 -0.6469 -1.5431 47 1 6.2102 0.6392 -3.0253 48 1 7.3783 0.2116 -1.7378 49 1 8.5473 6.0225 -2.1410 50 1 5.4338 3.0107 -0.0637 51 1 4.9083 3.4399 -1.7140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713716396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:39 Heat of formation + Delta-G solvation = 37.534483 kcal Electronic energy + Delta-G solvation = -30783.336271 eV Core-core repulsion = 26876.573160 eV Total energy + Delta-G solvation = -3906.763111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.83548 -41.03200 -39.13021 -37.56455 -37.14049 -34.68495 -33.52517 -32.96346 -32.09283 -31.37054 -29.64040 -27.12425 -26.66615 -25.64743 -25.01024 -24.17287 -22.65795 -22.56826 -21.95739 -21.66556 -19.78802 -19.12482 -18.58394 -17.88843 -17.54543 -17.06303 -16.97394 -16.40602 -16.11742 -16.01921 -15.56463 -15.41503 -15.04993 -14.88992 -14.80530 -14.54379 -14.50265 -14.44448 -14.01829 -13.93057 -13.54448 -13.24785 -13.09254 -12.99166 -12.94093 -12.76005 -12.58706 -12.45146 -12.36584 -12.21107 -12.08011 -12.02193 -11.79839 -11.65458 -11.57039 -11.45233 -10.77786 -10.59945 -10.43490 -10.23713 -10.07318 -9.63215 -8.82884 -8.26771 -5.64591 0.19515 0.21760 1.23324 1.31427 1.44595 1.48534 1.86285 2.36910 2.66116 2.97257 3.02051 3.22918 3.42986 3.52835 3.61086 3.69791 3.74237 3.78055 3.90284 3.96876 4.03000 4.13555 4.17141 4.18902 4.22889 4.27080 4.38068 4.46567 4.52508 4.59075 4.63373 4.73747 4.76473 4.77421 4.84779 4.92473 4.93183 4.94820 4.95781 4.98979 5.03356 5.12241 5.25918 5.27662 5.33492 5.42805 5.50844 5.70368 5.78226 5.79281 6.07753 6.42827 6.76870 7.04131 7.23169 7.46977 8.12987 8.94564 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.003128 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.850539 B = 8949.978142 C = 9840.027568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.101 3.899 4 N -0.598 5.598 5 C 0.528 3.472 6 O -0.564 6.564 7 C -0.163 4.163 8 H 0.155 0.845 9 C -0.127 4.127 10 C -0.100 4.100 11 H 0.100 0.900 12 C -0.011 4.011 13 C -0.167 4.167 14 C 0.095 3.905 15 N -0.515 5.515 16 C 0.093 3.907 17 C -0.177 4.177 18 C 0.146 3.854 19 H 0.123 0.877 20 C -0.125 4.125 21 C 0.127 3.873 22 N -0.619 5.619 23 C -0.243 4.243 24 H 0.037 0.963 25 C -0.029 4.029 26 N -0.954 5.954 27 Si 0.961 3.039 28 H -0.279 1.279 29 H -0.300 1.300 30 H -0.256 1.256 31 C 0.118 3.882 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.148 0.852 41 H 0.164 0.836 42 H 0.183 0.817 43 H 0.173 0.827 44 H 0.135 0.865 45 H 0.063 0.937 46 H 0.103 0.897 47 H 0.041 0.959 48 H 0.034 0.966 49 H 0.265 0.735 50 H 0.020 0.980 51 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.611 -11.463 11.852 30.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.020 4.020 4 N -0.330 5.330 5 C 0.317 3.683 6 O -0.442 6.442 7 C -0.184 4.184 8 H 0.173 0.827 9 C -0.164 4.164 10 C -0.118 4.118 11 H 0.118 0.882 12 C -0.019 4.019 13 C -0.187 4.187 14 C -0.061 4.061 15 N -0.224 5.224 16 C -0.063 4.063 17 C -0.197 4.197 18 C 0.041 3.959 19 H 0.141 0.859 20 C -0.164 4.164 21 C 0.002 3.998 22 N -0.347 5.347 23 C -0.372 4.372 24 H 0.055 0.945 25 C -0.225 4.225 26 N -0.599 5.599 27 Si 0.789 3.211 28 H -0.206 1.206 29 H -0.228 1.228 30 H -0.180 1.180 31 C -0.008 4.008 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.166 0.834 41 H 0.181 0.819 42 H 0.200 0.800 43 H 0.190 0.810 44 H 0.153 0.847 45 H 0.082 0.918 46 H 0.121 0.879 47 H 0.059 0.941 48 H 0.052 0.948 49 H 0.074 0.926 50 H 0.038 0.962 51 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -25.232 -11.746 12.551 30.531 hybrid contribution 1.147 1.143 -1.195 2.012 sum -24.085 -10.603 11.356 28.661 Atomic orbital electron populations 1.21679 0.93404 1.02422 1.02823 1.21928 0.97329 0.95871 1.02422 1.22055 0.76683 0.98354 1.04940 1.47919 1.07977 1.72838 1.04226 1.20259 0.87788 0.75374 0.84887 1.90805 1.16627 1.49783 1.87021 1.22397 1.01704 1.06147 0.88151 0.82748 1.23272 1.03813 0.89885 0.99402 1.20950 0.98816 1.00827 0.91235 0.88156 1.19542 0.94350 0.94043 0.94011 1.22301 0.95220 1.02216 0.98923 1.23248 1.00407 0.90313 0.92178 1.67711 1.08979 1.16415 1.29338 1.23040 0.90990 0.98562 0.93695 1.22186 1.02182 0.97079 0.98245 1.21991 0.91545 0.94191 0.88130 0.85920 1.22996 0.95518 0.97292 1.00591 1.21814 0.96989 0.84280 0.96721 1.44533 1.08809 1.08510 1.72817 1.18422 0.85206 0.92811 1.40796 0.94494 1.26126 1.00675 0.96658 0.99039 1.69974 1.35010 1.04614 1.50320 0.85585 0.79651 0.77087 0.78744 1.20629 1.22793 1.18027 1.21876 0.87009 0.95887 0.95980 0.91449 0.91946 0.92258 0.91932 0.92341 0.88139 0.88967 0.89379 0.83449 0.81886 0.80007 0.81032 0.84659 0.91787 0.87860 0.94070 0.94779 0.92611 0.96231 0.97070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.49 16 2 C -0.14 -1.71 6.08 30.59 0.19 -1.52 16 3 C 0.10 1.56 5.03 86.38 0.43 1.99 16 4 N -0.60 -15.66 2.54 -791.24 -2.01 -17.67 16 5 C 0.53 15.93 6.56 87.66 0.58 16.51 16 6 O -0.56 -23.71 12.61 -3.04 -0.04 -23.75 16 7 C -0.16 -3.27 4.45 -11.54 -0.05 -3.32 16 8 H 0.16 2.13 6.42 -2.39 -0.02 2.11 16 9 C -0.13 -2.22 9.59 30.62 0.29 -1.93 16 10 C -0.10 -2.13 5.59 -11.51 -0.06 -2.19 16 11 H 0.10 2.83 7.67 -2.38 -0.02 2.81 16 12 C -0.01 -0.21 5.64 -19.67 -0.11 -0.32 16 13 C -0.17 -2.20 9.39 22.36 0.21 -1.99 16 14 C 0.09 1.34 11.18 84.68 0.95 2.29 16 15 N -0.51 -9.71 10.36 -195.84 -2.03 -11.74 16 16 C 0.09 1.64 11.18 84.68 0.95 2.58 16 17 C -0.18 -3.32 9.84 22.36 0.22 -3.10 16 18 C 0.15 4.75 3.43 46.18 0.16 4.91 16 19 H 0.12 3.25 7.85 -2.39 -0.02 3.23 16 20 C -0.13 -4.21 6.42 31.99 0.21 -4.01 16 21 C 0.13 5.36 7.23 86.85 0.63 5.98 16 22 N -0.62 -32.67 2.95 -691.98 -2.04 -34.71 16 23 C -0.24 -15.31 10.49 84.04 0.88 -14.43 16 24 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 25 C -0.03 -1.84 5.44 84.86 0.46 -1.37 16 26 N -0.95 -63.39 13.97 21.65 0.30 -63.09 16 27 Si 0.96 49.08 24.76 68.60 1.70 50.77 16 28 H -0.28 -13.73 6.91 99.48 0.69 -13.04 16 29 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 30 H -0.26 -12.17 7.09 99.48 0.71 -11.47 16 31 C 0.12 5.42 5.32 86.73 0.46 5.88 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.47 8.14 -2.38 -0.02 0.46 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.06 0.82 7.42 -2.39 -0.02 0.80 16 37 H 0.10 1.15 6.73 -2.39 -0.02 1.13 16 38 H 0.09 1.26 7.92 -2.39 -0.02 1.24 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.15 1.37 6.26 -2.39 -0.01 1.36 16 41 H 0.16 1.13 6.16 -2.91 -0.02 1.11 16 42 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 43 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 44 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 45 H 0.06 2.49 6.02 -2.39 -0.01 2.48 16 46 H 0.10 2.61 8.14 -2.39 -0.02 2.60 16 47 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.27 16.48 8.31 -92.71 -0.77 15.71 16 50 H 0.02 1.03 6.08 -2.39 -0.01 1.01 16 51 H 0.01 0.55 3.67 -2.38 -0.01 0.54 16 Total: -1.00 -85.59 398.94 3.88 -81.71 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.90 Total: 13.01 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 7.10 Total: 5.47 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -5.78 Total: -127.21 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.04 Total: -23.75 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.70 Total: 50.77 kcal Total: -85.59 3.88 -81.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713716396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.245 kcal (2) G-P(sol) polarization free energy of solvation -85.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds