Wall clock time and date at job start Wed Apr 1 2020 02:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47330 * 2 1 4 4 N 1.46502 * 109.47151 * 179.97438 * 3 2 1 5 5 C 1.34767 * 120.00545 * 274.99286 * 4 3 2 6 6 O 1.21279 * 120.00128 * 184.46592 * 5 4 3 7 7 C 1.50705 * 119.99897 * 4.45580 * 5 4 3 8 8 H 1.09009 * 110.72509 * 53.17923 * 7 5 4 9 9 C 1.54363 * 110.82148 * 176.79717 * 7 5 4 10 10 C 1.51221 * 105.11478 * 91.93080 * 9 7 5 11 11 C 1.38744 * 130.68785 * 197.19044 * 10 9 7 12 12 C 1.38579 * 118.55679 * 179.97438 * 11 10 9 13 13 C 1.38233 * 118.98660 * 0.02562 * 12 11 10 14 14 N 1.31689 * 120.80369 * 0.04012 * 13 12 11 15 15 C 1.32293 * 122.03232 * 359.91429 * 14 13 12 16 16 C 1.51477 * 130.15046 * 180.02562 * 15 14 13 17 17 C 1.46505 * 119.99468 * 94.99274 * 4 3 2 18 18 H 1.09003 * 110.88448 * 356.11751 * 17 4 3 19 19 C 1.55151 * 111.00516 * 119.99815 * 17 4 3 20 20 C 1.54327 * 102.94297 * 153.57530 * 19 17 4 21 21 N 1.47024 * 107.26994 * 337.80614 * 20 19 17 22 22 C 1.36932 * 125.64866 * 178.89454 * 21 20 19 23 23 H 1.07997 * 120.00118 * 187.10863 * 22 21 20 24 24 C 1.38816 * 119.99749 * 7.10557 * 22 21 20 25 25 N 1.31613 * 120.00328 * 351.74867 * 24 22 21 26 26 Si 1.86799 * 119.99691 * 171.75179 * 24 22 21 27 27 H 1.48504 * 109.47517 * 94.95408 * 26 24 22 28 28 H 1.48506 * 109.47136 * 214.95182 * 26 24 22 29 29 H 1.48507 * 109.47404 * 334.94958 * 26 24 22 30 30 C 1.47428 * 108.70199 * 358.94476 * 21 20 19 31 31 H 1.08998 * 109.46817 * 59.99299 * 1 2 3 32 32 H 1.08994 * 109.46937 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46935 * 300.00195 * 1 2 3 34 34 H 1.09004 * 109.46775 * 240.00448 * 2 1 3 35 35 H 1.09001 * 109.47278 * 120.00470 * 2 1 3 36 36 H 1.09004 * 109.46826 * 60.00479 * 3 2 1 37 37 H 1.09001 * 109.47324 * 300.00442 * 3 2 1 38 38 H 1.08999 * 110.31487 * 210.83991 * 9 7 5 39 39 H 1.09001 * 110.31657 * 333.02265 * 9 7 5 40 40 H 1.07999 * 120.72095 * 359.93642 * 11 10 9 41 41 H 1.07995 * 120.50531 * 180.02562 * 12 11 10 42 42 H 1.08000 * 119.59736 * 180.02562 * 13 12 11 43 43 H 1.08994 * 110.29534 * 43.89278 * 16 15 14 44 44 H 1.09000 * 110.37469 * 281.81256 * 16 15 14 45 45 H 1.08994 * 110.72186 * 271.94050 * 19 17 4 46 46 H 1.09008 * 110.71865 * 35.21343 * 19 17 4 47 47 H 1.08991 * 109.88199 * 97.22669 * 20 19 17 48 48 H 1.09000 * 109.88117 * 218.39089 * 20 19 17 49 49 H 0.97000 * 120.00082 * 179.97438 * 25 24 22 50 50 H 1.09007 * 110.36577 * 265.28524 * 30 21 20 51 51 H 1.08992 * 110.36577 * 142.96704 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1785 1.3410 1.1635 6 8 5.3886 1.4223 1.1727 7 6 3.4280 1.1268 2.4527 8 1 2.7625 0.2671 2.3734 9 6 4.4056 0.9621 3.6359 10 6 4.5897 2.3561 4.1923 11 6 5.5663 2.8736 5.0311 12 6 5.4917 4.2102 5.3891 13 6 4.4509 4.9775 4.9005 14 7 3.5405 4.4522 4.1071 15 6 3.5772 3.1813 3.7417 16 6 2.6403 2.3942 2.8488 17 6 4.2380 1.5527 -1.2631 18 1 3.5527 1.5574 -2.1107 19 6 5.1433 2.8127 -1.2729 20 6 6.2669 2.4233 -2.2565 21 7 6.3066 0.9548 -2.3149 22 6 7.1529 0.2095 -3.0915 23 1 7.0284 -0.8616 -3.1514 24 6 8.1709 0.8307 -3.8020 25 7 8.2255 2.1444 -3.8609 26 14 9.4633 -0.1979 -4.6744 27 1 9.0694 -0.3883 -6.0935 28 1 10.7738 0.4981 -4.6135 29 1 9.5744 -1.5212 -4.0096 30 6 5.2833 0.4176 -1.3995 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6768 1.9563 0.8901 37 1 1.6767 1.9564 -0.8899 38 1 3.9761 0.3061 4.3931 39 1 5.3588 0.5651 3.2868 40 1 6.3669 2.2481 5.3974 41 1 6.2353 4.6457 6.0400 42 1 4.3834 6.0204 5.1728 43 1 2.3874 2.9744 1.9615 44 1 1.7355 2.1234 3.3931 45 1 4.5935 3.6797 -1.6391 46 1 5.5494 3.0035 -0.2795 47 1 6.0507 2.8279 -3.2452 48 1 7.2225 2.8060 -1.8980 49 1 8.9371 2.5785 -4.3571 50 1 5.7245 0.1895 -0.4292 51 1 4.8226 -0.4732 -1.8264 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713721687.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:10 Heat of formation + Delta-G solvation = 36.045155 kcal Electronic energy + Delta-G solvation = -31328.326379 eV Core-core repulsion = 27421.498686 eV Total energy + Delta-G solvation = -3906.827693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.23240 -39.82707 -37.14067 -36.09822 -35.60706 -33.01344 -32.74371 -31.75804 -29.85200 -28.93948 -28.06422 -27.27806 -26.08301 -24.77653 -23.75900 -22.33626 -22.03322 -21.34602 -20.61773 -19.96752 -18.62465 -17.20185 -16.86003 -16.75434 -16.20054 -15.85685 -15.46252 -14.97944 -14.73993 -14.58647 -14.44964 -13.97543 -13.82268 -13.68884 -13.28162 -13.15442 -12.96424 -12.83079 -12.51161 -12.29490 -12.15236 -12.10342 -12.06590 -11.88828 -11.72545 -11.62114 -11.44363 -11.22155 -10.85945 -10.78871 -10.77242 -10.56463 -10.24491 -10.02773 -9.86858 -9.80507 -9.56185 -9.41388 -9.08042 -8.77832 -8.51173 -8.25354 -6.67433 -5.62797 -2.93505 0.99713 1.20401 2.80823 3.11737 3.45542 3.51278 3.53820 3.64091 3.80121 4.25443 4.38407 4.52615 4.59837 4.67527 4.78669 4.82219 4.84616 4.99746 5.06678 5.13980 5.24928 5.25877 5.33160 5.41753 5.47002 5.49748 5.50527 5.60400 5.62870 5.66349 5.68677 5.75490 5.85228 5.86539 5.88423 5.91993 5.96804 6.03908 6.13367 6.17038 6.31000 6.56006 6.59655 6.65576 6.74591 6.81088 7.27526 7.61892 7.69880 7.79564 7.88609 7.93024 8.36017 8.47255 9.31793 9.92958 10.60937 11.49548 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010929 B = 0.003435 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.464037 B = 8149.146606 C = 9729.417091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.099 3.901 4 N -0.602 5.602 5 C 0.517 3.483 6 O -0.508 6.508 7 C -0.113 4.113 8 H 0.114 0.886 9 C -0.067 4.067 10 C -0.132 4.132 11 C -0.063 4.063 12 C -0.173 4.173 13 C 0.097 3.903 14 N -0.479 5.479 15 C 0.115 3.885 16 C -0.062 4.062 17 C 0.131 3.869 18 H 0.090 0.910 19 C -0.154 4.154 20 C 0.185 3.815 21 N -0.602 5.602 22 C -0.225 4.225 23 H 0.076 0.924 24 C -0.007 4.007 25 N -0.919 5.919 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.128 3.872 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.156 0.844 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.039 0.961 48 H 0.044 0.956 49 H 0.251 0.749 50 H 0.045 0.955 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.646 0.283 18.068 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C -0.024 4.024 4 N -0.334 5.334 5 C 0.304 3.696 6 O -0.382 6.382 7 C -0.134 4.134 8 H 0.132 0.868 9 C -0.105 4.105 10 C -0.134 4.134 11 C -0.088 4.088 12 C -0.193 4.193 13 C -0.060 4.060 14 N -0.188 5.188 15 C -0.023 4.023 16 C -0.100 4.100 17 C 0.028 3.972 18 H 0.108 0.892 19 C -0.193 4.193 20 C 0.060 3.940 21 N -0.328 5.328 22 C -0.353 4.353 23 H 0.094 0.906 24 C -0.204 4.204 25 N -0.567 5.567 26 Si 0.738 3.262 27 H -0.218 1.218 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.001 3.999 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.173 0.827 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.465 0.914 17.613 24.128 hybrid contribution 1.401 -0.894 -0.239 1.679 sum -15.064 0.020 17.374 22.995 Atomic orbital electron populations 1.21706 0.95203 1.01914 1.01919 1.22036 0.95975 0.97370 1.03081 1.21887 0.79963 0.96988 1.03575 1.47900 1.06021 1.72951 1.06574 1.20158 0.87947 0.77048 0.84491 1.90755 1.13706 1.47711 1.86031 1.22159 0.98110 0.99446 0.93733 0.86789 1.20891 1.01200 0.93099 0.95296 1.21389 0.96141 0.97901 0.97938 1.21072 0.97154 0.95252 0.95360 1.22060 1.00269 0.94695 1.02241 1.22580 0.90238 0.99948 0.93217 1.66802 1.27283 1.12732 1.11944 1.21714 0.95164 0.89419 0.95974 1.21057 0.96715 0.93478 0.98736 1.22417 0.93319 0.98191 0.83276 0.89220 1.23229 0.98263 0.95677 1.02111 1.21044 0.94130 0.83923 0.94909 1.44305 1.39404 1.01811 1.47316 1.19022 1.05901 0.90535 1.19888 0.90608 1.24808 0.98909 0.95767 1.00879 1.69989 1.33978 1.06877 1.45821 0.86167 0.81704 0.79208 0.79118 1.21785 1.21668 1.20690 1.21838 0.89577 0.93356 0.95109 0.92506 0.92525 0.92629 0.91116 0.91714 0.90070 0.90073 0.89301 0.88262 0.84961 0.84636 0.82693 0.88843 0.88300 0.92866 0.90752 0.94263 0.93764 0.93869 0.93783 0.95219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.15 -1.25 6.14 -26.73 -0.16 -1.42 16 3 C 0.10 0.98 4.99 -4.04 -0.02 0.96 16 4 N -0.60 -8.64 2.57 -163.67 -0.42 -9.07 16 5 C 0.52 7.91 6.22 -10.99 -0.07 7.84 16 6 O -0.51 -10.22 11.61 5.56 0.06 -10.16 16 7 C -0.11 -1.20 2.61 -90.32 -0.24 -1.44 16 8 H 0.11 0.90 6.18 -51.92 -0.32 0.58 16 9 C -0.07 -0.73 6.05 -26.91 -0.16 -0.90 16 10 C -0.13 -1.63 6.15 -104.20 -0.64 -2.27 16 11 C -0.06 -0.71 10.17 -39.27 -0.40 -1.11 16 12 C -0.17 -1.77 10.12 -39.46 -0.40 -2.17 16 13 C 0.10 1.09 11.18 -17.61 -0.20 0.90 16 14 N -0.48 -6.46 10.35 -9.19 -0.10 -6.56 16 15 C 0.11 1.47 7.32 -82.04 -0.60 0.87 16 16 C -0.06 -0.62 5.21 -26.77 -0.14 -0.76 16 17 C 0.13 2.42 3.54 -65.78 -0.23 2.18 16 18 H 0.09 1.54 7.85 -51.93 -0.41 1.14 16 19 C -0.15 -3.24 6.33 -24.90 -0.16 -3.40 16 20 C 0.19 4.87 5.38 -3.06 -0.02 4.85 16 21 N -0.60 -16.43 3.39 -170.07 -0.58 -17.01 16 22 C -0.23 -6.61 10.26 -15.06 -0.15 -6.76 16 23 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 24 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 25 N -0.92 -28.24 10.38 55.49 0.58 -27.67 16 26 Si 0.91 22.93 29.56 -169.99 -5.02 17.91 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 30 C 0.13 2.88 6.58 -2.53 -0.02 2.87 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.53 6.31 -51.93 -0.33 0.20 16 36 H 0.08 0.65 4.48 -51.93 -0.23 0.42 16 37 H 0.08 0.76 7.89 -51.93 -0.41 0.35 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.29 7.08 -51.93 -0.37 0.93 16 40 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.09 0.98 6.00 -51.93 -0.31 0.67 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.68 6.10 -51.92 -0.32 1.37 16 47 H 0.04 1.10 7.57 -51.93 -0.39 0.71 16 48 H 0.04 1.31 7.36 -51.93 -0.38 0.93 16 49 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.04 1.07 5.69 -51.93 -0.30 0.78 16 51 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -36.25 390.79 -10.88 -47.13 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.96 Total: 0.21 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -3.33 Total: -0.67 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.52 Total: -60.30 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.06 Total: -10.16 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.25 -10.88 -47.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713721687.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.175 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds