Wall clock time and date at job start Wed Apr 1 2020 02:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47330 * 2 1 4 4 N 1.46502 * 109.47151 * 179.97438 * 3 2 1 5 5 C 1.34767 * 120.00545 * 274.99286 * 4 3 2 6 6 O 1.21279 * 120.00128 * 184.46592 * 5 4 3 7 7 C 1.50705 * 119.99897 * 4.45580 * 5 4 3 8 8 H 1.09009 * 110.72509 * 53.17923 * 7 5 4 9 9 C 1.54363 * 110.82148 * 176.79717 * 7 5 4 10 10 C 1.51221 * 105.11478 * 91.93080 * 9 7 5 11 11 C 1.38744 * 130.68785 * 197.19044 * 10 9 7 12 12 C 1.38579 * 118.55679 * 179.97438 * 11 10 9 13 13 C 1.38233 * 118.98660 * 0.02562 * 12 11 10 14 14 N 1.31689 * 120.80369 * 0.04012 * 13 12 11 15 15 C 1.32293 * 122.03232 * 359.91429 * 14 13 12 16 16 C 1.51477 * 130.15046 * 180.02562 * 15 14 13 17 17 C 1.46505 * 119.99468 * 94.99274 * 4 3 2 18 18 H 1.09003 * 110.88448 * 356.11751 * 17 4 3 19 19 C 1.55151 * 111.00516 * 119.99815 * 17 4 3 20 20 C 1.54327 * 102.94297 * 153.57530 * 19 17 4 21 21 N 1.47024 * 107.26994 * 337.80614 * 20 19 17 22 22 C 1.36932 * 125.64866 * 178.89454 * 21 20 19 23 23 H 1.07997 * 120.00118 * 187.10863 * 22 21 20 24 24 C 1.38816 * 119.99749 * 7.10557 * 22 21 20 25 25 N 1.31613 * 120.00328 * 351.74867 * 24 22 21 26 26 Si 1.86799 * 119.99691 * 171.75179 * 24 22 21 27 27 H 1.48504 * 109.47517 * 94.95408 * 26 24 22 28 28 H 1.48506 * 109.47136 * 214.95182 * 26 24 22 29 29 H 1.48507 * 109.47404 * 334.94958 * 26 24 22 30 30 C 1.47428 * 108.70199 * 358.94476 * 21 20 19 31 31 H 1.08998 * 109.46817 * 59.99299 * 1 2 3 32 32 H 1.08994 * 109.46937 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46935 * 300.00195 * 1 2 3 34 34 H 1.09004 * 109.46775 * 240.00448 * 2 1 3 35 35 H 1.09001 * 109.47278 * 120.00470 * 2 1 3 36 36 H 1.09004 * 109.46826 * 60.00479 * 3 2 1 37 37 H 1.09001 * 109.47324 * 300.00442 * 3 2 1 38 38 H 1.08999 * 110.31487 * 210.83991 * 9 7 5 39 39 H 1.09001 * 110.31657 * 333.02265 * 9 7 5 40 40 H 1.07999 * 120.72095 * 359.93642 * 11 10 9 41 41 H 1.07995 * 120.50531 * 180.02562 * 12 11 10 42 42 H 1.08000 * 119.59736 * 180.02562 * 13 12 11 43 43 H 1.08994 * 110.29534 * 43.89278 * 16 15 14 44 44 H 1.09000 * 110.37469 * 281.81256 * 16 15 14 45 45 H 1.08994 * 110.72186 * 271.94050 * 19 17 4 46 46 H 1.09008 * 110.71865 * 35.21343 * 19 17 4 47 47 H 1.08991 * 109.88199 * 97.22669 * 20 19 17 48 48 H 1.09000 * 109.88117 * 218.39089 * 20 19 17 49 49 H 0.97000 * 120.00082 * 179.97438 * 25 24 22 50 50 H 1.09007 * 110.36577 * 265.28524 * 30 21 20 51 51 H 1.08992 * 110.36577 * 142.96704 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1785 1.3410 1.1635 6 8 5.3886 1.4223 1.1727 7 6 3.4280 1.1268 2.4527 8 1 2.7625 0.2671 2.3734 9 6 4.4056 0.9621 3.6359 10 6 4.5897 2.3561 4.1923 11 6 5.5663 2.8736 5.0311 12 6 5.4917 4.2102 5.3891 13 6 4.4509 4.9775 4.9005 14 7 3.5405 4.4522 4.1071 15 6 3.5772 3.1813 3.7417 16 6 2.6403 2.3942 2.8488 17 6 4.2380 1.5527 -1.2631 18 1 3.5527 1.5574 -2.1107 19 6 5.1433 2.8127 -1.2729 20 6 6.2669 2.4233 -2.2565 21 7 6.3066 0.9548 -2.3149 22 6 7.1529 0.2095 -3.0915 23 1 7.0284 -0.8616 -3.1514 24 6 8.1709 0.8307 -3.8020 25 7 8.2255 2.1444 -3.8609 26 14 9.4633 -0.1979 -4.6744 27 1 9.0694 -0.3883 -6.0935 28 1 10.7738 0.4981 -4.6135 29 1 9.5744 -1.5212 -4.0096 30 6 5.2833 0.4176 -1.3995 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6768 1.9563 0.8901 37 1 1.6767 1.9564 -0.8899 38 1 3.9761 0.3061 4.3931 39 1 5.3588 0.5651 3.2868 40 1 6.3669 2.2481 5.3974 41 1 6.2353 4.6457 6.0400 42 1 4.3834 6.0204 5.1728 43 1 2.3874 2.9744 1.9615 44 1 1.7355 2.1234 3.3931 45 1 4.5935 3.6797 -1.6391 46 1 5.5494 3.0035 -0.2795 47 1 6.0507 2.8279 -3.2452 48 1 7.2225 2.8060 -1.8980 49 1 8.9371 2.5785 -4.3571 50 1 5.7245 0.1895 -0.4292 51 1 4.8226 -0.4732 -1.8264 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713721687.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:09 Heat of formation + Delta-G solvation = 13.743850 kcal Electronic energy + Delta-G solvation = -31329.293436 eV Core-core repulsion = 27421.498686 eV Total energy + Delta-G solvation = -3907.794750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.19890 -40.94580 -38.72417 -37.17750 -36.75892 -34.56534 -33.58224 -33.21860 -31.21888 -30.51715 -29.08903 -28.71702 -26.96729 -26.61010 -24.97346 -23.28264 -22.90501 -22.23146 -22.02572 -21.85437 -19.79847 -18.93875 -18.11820 -17.78294 -17.16593 -17.01770 -16.70462 -16.50494 -15.99189 -15.68372 -15.61847 -15.47744 -15.00875 -14.60540 -14.52341 -14.31657 -14.13878 -13.85024 -13.78961 -13.67151 -13.65370 -13.21798 -12.96621 -12.93903 -12.86149 -12.76745 -12.71745 -12.49127 -12.29695 -12.21608 -12.10536 -12.04945 -11.90627 -11.83800 -11.60494 -11.36462 -10.71316 -10.66672 -10.45746 -10.26185 -9.63445 -9.57748 -8.87245 -7.88802 -5.23100 0.16649 0.34810 1.41746 1.45373 1.54618 1.66063 1.95880 2.48379 2.80237 3.00531 3.29054 3.42565 3.45039 3.68438 3.72519 3.89982 3.91375 4.01530 4.06283 4.07771 4.20123 4.22131 4.23566 4.35538 4.40557 4.52322 4.59565 4.62844 4.65820 4.69769 4.74484 4.77557 4.83758 4.88260 4.91972 4.96366 4.99526 5.02811 5.08602 5.13397 5.22305 5.31074 5.34347 5.37094 5.40132 5.57149 5.61802 5.66563 5.77782 5.80310 6.16002 6.53178 7.03222 7.06008 7.30204 7.73856 8.40837 9.22741 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010929 B = 0.003435 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.464037 B = 8149.146606 C = 9729.417091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.093 3.907 4 N -0.598 5.598 5 C 0.509 3.491 6 O -0.565 6.565 7 C -0.100 4.100 8 H 0.152 0.848 9 C -0.065 4.065 10 C -0.153 4.153 11 C -0.081 4.081 12 C -0.173 4.173 13 C 0.083 3.917 14 N -0.506 5.506 15 C 0.092 3.908 16 C -0.055 4.055 17 C 0.152 3.848 18 H 0.110 0.890 19 C -0.138 4.138 20 C 0.197 3.803 21 N -0.622 5.622 22 C -0.246 4.246 23 H 0.082 0.918 24 C -0.066 4.066 25 N -0.951 5.951 26 Si 0.980 3.020 27 H -0.280 1.280 28 H -0.294 1.294 29 H -0.269 1.269 30 C 0.127 3.873 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.145 0.855 41 H 0.164 0.836 42 H 0.180 0.820 43 H 0.090 0.910 44 H 0.137 0.863 45 H 0.077 0.923 46 H 0.056 0.944 47 H 0.014 0.986 48 H -0.005 1.005 49 H 0.247 0.753 50 H 0.027 0.973 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.362 -0.695 19.342 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.028 4.028 4 N -0.329 5.329 5 C 0.299 3.701 6 O -0.444 6.444 7 C -0.121 4.121 8 H 0.169 0.831 9 C -0.102 4.102 10 C -0.155 4.155 11 C -0.107 4.107 12 C -0.192 4.192 13 C -0.074 4.074 14 N -0.215 5.215 15 C -0.046 4.046 16 C -0.093 4.093 17 C 0.047 3.953 18 H 0.128 0.872 19 C -0.177 4.177 20 C 0.071 3.929 21 N -0.349 5.349 22 C -0.375 4.375 23 H 0.100 0.900 24 C -0.259 4.259 25 N -0.599 5.599 26 Si 0.807 3.193 27 H -0.207 1.207 28 H -0.221 1.221 29 H -0.194 1.194 30 C 0.001 3.999 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.089 0.911 40 H 0.163 0.837 41 H 0.181 0.819 42 H 0.197 0.803 43 H 0.109 0.891 44 H 0.155 0.845 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.032 0.968 48 H 0.014 0.986 49 H 0.056 0.944 50 H 0.045 0.955 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -19.256 -0.088 18.909 26.988 hybrid contribution 2.286 -0.565 -0.578 2.425 sum -16.970 -0.653 18.331 24.988 Atomic orbital electron populations 1.21678 0.93291 1.02469 1.02861 1.21982 0.97483 0.96015 1.02525 1.22249 0.76667 0.98494 1.05368 1.47943 1.07865 1.72306 1.04787 1.21076 0.87584 0.75497 0.85992 1.90741 1.16505 1.50144 1.86974 1.22182 0.98021 1.01321 0.90594 0.83086 1.20929 1.00236 0.92966 0.96111 1.21700 0.96590 0.98710 0.98463 1.21441 0.97511 0.96161 0.95543 1.22401 1.00481 0.94294 1.02053 1.23103 0.90151 1.01255 0.92865 1.66835 1.28420 1.13255 1.12980 1.22202 0.96156 0.89530 0.96662 1.21150 0.97285 0.92341 0.98523 1.22014 0.92745 0.94318 0.86178 0.87241 1.22994 0.97257 0.97987 0.99504 1.20729 0.93812 0.83746 0.94618 1.44613 1.40369 1.02264 1.47668 1.19451 1.06729 0.91176 1.20107 0.90026 1.25732 1.00968 0.97009 1.02163 1.70220 1.34378 1.08616 1.46713 0.85052 0.78209 0.77822 0.78189 1.20693 1.22059 1.19394 1.21912 0.89597 0.95182 0.93164 0.92512 0.92206 0.90791 0.93115 0.90971 0.87466 0.89190 0.85952 0.91082 0.83690 0.81856 0.80307 0.89139 0.84503 0.90400 0.92521 0.96812 0.98640 0.94379 0.95531 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.62 16 2 C -0.14 -1.95 6.14 30.60 0.19 -1.76 16 3 C 0.09 1.53 4.99 86.38 0.43 1.96 16 4 N -0.60 -16.22 2.57 -790.13 -2.03 -18.26 16 5 C 0.51 15.19 6.22 87.66 0.55 15.73 16 6 O -0.57 -23.53 11.61 -3.03 -0.04 -23.57 16 7 C -0.10 -1.88 2.61 -10.60 -0.03 -1.91 16 8 H 0.15 1.71 6.18 -2.38 -0.01 1.69 16 9 C -0.06 -1.33 6.05 30.48 0.18 -1.14 16 10 C -0.15 -3.66 6.15 -19.59 -0.12 -3.78 16 11 C -0.08 -1.79 10.17 22.47 0.23 -1.56 16 12 C -0.17 -3.37 10.12 22.35 0.23 -3.14 16 13 C 0.08 1.78 11.18 84.71 0.95 2.73 16 14 N -0.51 -13.13 10.35 -182.97 -1.89 -15.02 16 15 C 0.09 2.23 7.32 42.72 0.31 2.54 16 16 C -0.06 -0.94 5.21 30.57 0.16 -0.78 16 17 C 0.15 5.53 3.54 46.38 0.16 5.70 16 18 H 0.11 3.58 7.85 -2.39 -0.02 3.56 16 19 C -0.14 -5.96 6.33 31.78 0.20 -5.76 16 20 C 0.20 10.90 5.38 86.73 0.47 11.36 16 21 N -0.62 -35.27 3.39 -691.99 -2.35 -37.62 16 22 C -0.25 -14.83 10.26 84.04 0.86 -13.97 16 23 H 0.08 4.69 7.84 -2.91 -0.02 4.66 16 24 C -0.07 -3.98 5.48 84.86 0.46 -3.52 16 25 N -0.95 -60.90 10.38 21.65 0.22 -60.67 16 26 Si 0.98 48.14 29.56 68.60 2.03 50.17 16 27 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 28 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 29 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 30 C 0.13 5.84 6.58 86.85 0.57 6.41 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 0.89 6.31 -2.39 -0.02 0.87 16 36 H 0.11 1.25 4.48 -2.38 -0.01 1.24 16 37 H 0.09 1.37 7.89 -2.39 -0.02 1.35 16 38 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.89 7.08 -2.39 -0.02 1.87 16 40 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 41 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 43 H 0.09 1.60 6.00 -2.39 -0.01 1.59 16 44 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 46 H 0.06 2.67 6.10 -2.38 -0.01 2.65 16 47 H 0.01 0.82 7.57 -2.39 -0.02 0.80 16 48 H 0.00 -0.30 7.36 -2.39 -0.02 -0.32 16 49 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 50 H 0.03 1.34 5.69 -2.38 -0.01 1.33 16 51 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -85.13 390.79 3.39 -81.74 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.93 Total: 14.75 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 6.52 Total: 8.48 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -6.05 Total: -131.58 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.04 Total: -23.57 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -85.13 3.39 -81.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713721687.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.484 kcal (2) G-P(sol) polarization free energy of solvation -85.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds