Wall clock time and date at job start Wed Apr 1 2020 02:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 N 1.46499 * 109.47231 * 180.02562 * 3 2 1 5 5 C 1.34779 * 120.00027 * 272.20605 * 4 3 2 6 6 O 1.21279 * 119.99742 * 355.43872 * 5 4 3 7 7 C 1.50705 * 119.99879 * 175.43094 * 5 4 3 8 8 H 1.08998 * 110.72948 * 29.88568 * 7 5 4 9 9 C 1.54372 * 110.82027 * 153.29107 * 7 5 4 10 10 C 1.51220 * 105.12045 * 144.51181 * 9 7 5 11 11 C 1.38742 * 130.69824 * 162.91434 * 10 9 7 12 12 C 1.38569 * 118.56442 * 180.02562 * 11 10 9 13 13 C 1.38234 * 118.98640 * 359.97438 * 12 11 10 14 14 N 1.31688 * 120.80114 * 359.97438 * 13 12 11 15 15 C 1.32299 * 122.03138 * 0.02562 * 14 13 12 16 16 C 1.51788 * 130.05883 * 179.85556 * 15 14 13 17 17 C 1.46502 * 120.00030 * 92.21029 * 4 3 2 18 18 H 1.09001 * 110.77770 * 230.87721 * 17 4 3 19 19 C 1.55403 * 110.69656 * 107.48786 * 17 4 3 20 20 C 1.54914 * 101.66398 * 277.04779 * 19 17 4 21 21 N 1.47426 * 104.82891 * 323.07542 * 20 19 17 22 22 C 1.36948 * 125.64599 * 204.16212 * 21 20 19 23 23 H 1.07997 * 119.99728 * 331.53928 * 22 21 20 24 24 C 1.38811 * 119.99647 * 151.53848 * 22 21 20 25 25 N 1.31619 * 119.99861 * 157.27800 * 24 22 21 26 26 Si 1.86797 * 120.00210 * 337.28209 * 24 22 21 27 27 H 1.48491 * 109.47360 * 91.48763 * 26 24 22 28 28 H 1.48510 * 109.47020 * 211.48718 * 26 24 22 29 29 H 1.48501 * 109.47052 * 331.47844 * 26 24 22 30 30 C 1.47024 * 108.70534 * 24.12854 * 21 20 19 31 31 H 1.08998 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47410 * 299.99870 * 1 2 3 33 33 H 1.09004 * 109.46950 * 60.00202 * 1 2 3 34 34 H 1.08995 * 109.47410 * 240.00130 * 2 1 3 35 35 H 1.08998 * 109.47526 * 119.99412 * 2 1 3 36 36 H 1.09002 * 109.47719 * 60.00268 * 3 2 1 37 37 H 1.09004 * 109.47148 * 299.99677 * 3 2 1 38 38 H 1.09001 * 110.30816 * 263.42469 * 9 7 5 39 39 H 1.09000 * 110.30863 * 25.59830 * 9 7 5 40 40 H 1.08011 * 120.71529 * 359.97438 * 11 10 9 41 41 H 1.07996 * 120.51270 * 179.97438 * 12 11 10 42 42 H 1.07999 * 119.59992 * 180.02562 * 13 12 11 43 43 H 1.08999 * 110.24669 * 78.27541 * 16 15 14 44 44 H 1.08996 * 110.48548 * 316.04399 * 16 15 14 45 45 H 1.09001 * 110.89086 * 158.98008 * 19 17 4 46 46 H 1.08996 * 111.06978 * 35.19229 * 19 17 4 47 47 H 1.08997 * 110.36750 * 204.24281 * 20 19 17 48 48 H 1.08999 * 110.36725 * 81.91239 * 20 19 17 49 49 H 0.96997 * 120.00405 * 180.02562 * 25 24 22 50 50 H 1.09006 * 109.87701 * 118.35792 * 30 21 20 51 51 H 1.08999 * 109.88240 * 239.36240 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1793 1.3975 1.1654 6 8 3.5762 1.4404 2.2168 7 6 5.6828 1.2936 1.1628 8 1 6.1011 1.7727 0.2776 9 6 6.2772 1.9043 2.4500 10 6 7.4722 1.0391 2.7817 11 6 8.5540 1.2728 3.6183 12 6 9.5233 0.2898 3.7384 13 6 9.3786 -0.8845 3.0236 14 7 8.3376 -1.0726 2.2393 15 6 7.3913 -0.1588 2.0979 16 6 6.1307 -0.1807 1.2528 17 6 4.2369 1.4918 -1.2687 18 1 4.9871 0.7023 -1.3130 19 6 4.8897 2.8873 -1.4723 20 6 3.7073 3.7048 -2.0498 21 7 2.9834 2.7591 -2.9187 22 6 2.1811 3.0996 -3.9750 23 1 1.6644 4.0480 -3.9769 24 6 2.0320 2.2258 -5.0432 25 7 0.9712 2.3084 -5.8179 26 14 3.3370 0.9327 -5.3812 27 1 2.9868 -0.3221 -4.6686 28 1 3.4068 0.6698 -6.8412 29 1 4.6548 1.4225 -4.9030 30 6 3.2660 1.3899 -2.4639 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 6.5924 2.9322 2.2705 39 1 5.5471 1.8673 3.2585 40 1 8.6393 2.2012 4.1637 41 1 10.3788 0.4388 4.3805 42 1 10.1279 -1.6574 3.1101 43 1 5.3614 -0.7811 1.7384 44 1 6.3450 -0.5718 0.2582 45 1 5.7116 2.8315 -2.1861 46 1 5.2265 3.3045 -0.5234 47 1 4.0780 4.5479 -2.6328 48 1 3.0591 4.0540 -1.2460 49 1 0.8668 1.6976 -6.5642 50 1 2.3414 0.9052 -2.1502 51 1 3.7283 0.8196 -3.2696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713721689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:18 Heat of formation + Delta-G solvation = 34.333176 kcal Electronic energy + Delta-G solvation = -31325.435200 eV Core-core repulsion = 27418.533270 eV Total energy + Delta-G solvation = -3906.901930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.24144 -40.09895 -38.00496 -36.19215 -35.01259 -33.34764 -32.88512 -31.99859 -29.98576 -29.54347 -28.18337 -28.08237 -26.56760 -24.26392 -24.04043 -22.13029 -22.10096 -21.42713 -20.84429 -20.38693 -18.56919 -17.42793 -17.07225 -16.91748 -16.66605 -16.01211 -15.81024 -15.41179 -15.11749 -14.68531 -14.35873 -14.12468 -13.85655 -13.51490 -13.43637 -13.23954 -13.13707 -13.11781 -12.88710 -12.75813 -12.57522 -11.96696 -11.93637 -11.82208 -11.68137 -11.65285 -11.47952 -11.36374 -11.22101 -11.06390 -10.86664 -10.65582 -10.47283 -10.35765 -10.17635 -9.99211 -9.69183 -9.56191 -9.53417 -8.94718 -8.63113 -8.46949 -7.03540 -6.06552 -3.41793 0.83409 1.02522 2.55932 3.03092 3.25890 3.40515 3.43347 3.51470 3.73708 4.10684 4.42144 4.45162 4.49619 4.65557 4.66564 4.81611 4.82824 4.91242 4.93792 5.02986 5.16290 5.22899 5.26742 5.29100 5.30488 5.39102 5.45027 5.49627 5.52386 5.54060 5.70590 5.77764 5.80082 5.82483 5.86004 5.92787 5.96604 5.97760 6.05032 6.08220 6.25173 6.27810 6.35153 6.41362 6.43561 6.51589 6.52819 6.69729 6.76641 7.54345 7.71180 7.74758 8.23159 8.24036 8.75569 9.58742 10.10681 11.09732 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.003260 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.061281 B = 8586.997774 C = 9304.890912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.104 3.896 4 N -0.589 5.589 5 C 0.528 3.472 6 O -0.542 6.542 7 C -0.116 4.116 8 H 0.110 0.890 9 C -0.066 4.066 10 C -0.141 4.141 11 C -0.065 4.065 12 C -0.175 4.175 13 C 0.100 3.900 14 N -0.479 5.479 15 C 0.123 3.877 16 C -0.054 4.054 17 C 0.120 3.880 18 H 0.085 0.915 19 C -0.152 4.152 20 C 0.132 3.868 21 N -0.605 5.605 22 C -0.248 4.248 23 H 0.088 0.912 24 C 0.032 3.968 25 N -0.900 5.900 26 Si 0.879 3.121 27 H -0.286 1.286 28 H -0.301 1.301 29 H -0.273 1.273 30 C 0.111 3.889 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.157 0.843 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.029 0.971 49 H 0.264 0.736 50 H 0.059 0.941 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.637 -3.481 17.534 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C -0.017 4.017 4 N -0.320 5.320 5 C 0.315 3.685 6 O -0.420 6.420 7 C -0.138 4.138 8 H 0.128 0.872 9 C -0.104 4.104 10 C -0.143 4.143 11 C -0.090 4.090 12 C -0.195 4.195 13 C -0.058 4.058 14 N -0.187 5.187 15 C -0.014 4.014 16 C -0.092 4.092 17 C 0.016 3.984 18 H 0.103 0.897 19 C -0.191 4.191 20 C 0.007 3.993 21 N -0.332 5.332 22 C -0.375 4.375 23 H 0.106 0.894 24 C -0.168 4.168 25 N -0.542 5.542 26 Si 0.710 3.290 27 H -0.213 1.213 28 H -0.229 1.229 29 H -0.199 1.199 30 C -0.014 4.014 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.174 0.826 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.047 0.953 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 13.070 -4.261 17.378 22.158 hybrid contribution 1.040 -0.088 0.012 1.043 sum 14.109 -4.349 17.390 22.812 Atomic orbital electron populations 1.21670 0.95087 1.01609 1.02263 1.21897 0.96449 0.97275 1.01937 1.21722 0.78363 0.97216 1.04450 1.47959 1.07084 1.71590 1.05344 1.20049 0.88959 0.76056 0.83447 1.90662 1.70029 1.50410 1.30871 1.22149 0.93342 0.97342 1.00934 0.87164 1.20916 0.94060 0.98107 0.97294 1.21443 0.96779 0.97841 0.98235 1.21068 0.92305 0.99392 0.96275 1.22065 1.00362 0.95209 1.01848 1.22633 0.94683 0.96352 0.92104 1.66842 1.01638 1.32563 1.17703 1.21798 0.94253 0.89758 0.95630 1.20868 0.92841 0.95316 1.00207 1.22260 0.94650 0.97812 0.83683 0.89674 1.23395 0.99173 0.95647 1.00930 1.21705 0.90702 0.93347 0.93519 1.44703 1.55157 0.99338 1.34038 1.18551 1.19023 1.05939 0.93954 0.89411 1.25225 0.97066 0.98408 0.96126 1.69844 1.25719 1.39115 1.19506 0.86914 0.84186 0.81749 0.76171 1.21305 1.22876 1.19916 1.21979 0.97010 0.90083 0.92294 0.92818 0.92815 0.91866 0.91668 0.92253 0.90383 0.87771 0.89842 0.87759 0.84885 0.84559 0.82595 0.88704 0.88857 0.90179 0.91165 0.93065 0.95329 0.92561 0.92311 0.94794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.62 16 2 C -0.14 -1.98 5.92 -26.73 -0.16 -2.14 16 3 C 0.10 1.63 4.68 -4.04 -0.02 1.61 16 4 N -0.59 -8.67 2.58 -163.87 -0.42 -9.09 16 5 C 0.53 7.46 6.39 -10.98 -0.07 7.39 16 6 O -0.54 -9.09 15.30 5.56 0.09 -9.01 16 7 C -0.12 -1.32 2.43 -90.34 -0.22 -1.54 16 8 H 0.11 1.15 5.23 -51.93 -0.27 0.88 16 9 C -0.07 -0.69 6.27 -26.91 -0.17 -0.86 16 10 C -0.14 -1.51 6.16 -104.21 -0.64 -2.15 16 11 C -0.06 -0.57 10.17 -39.27 -0.40 -0.97 16 12 C -0.18 -1.40 10.12 -39.46 -0.40 -1.79 16 13 C 0.10 0.94 11.18 -17.61 -0.20 0.74 16 14 N -0.48 -5.90 10.35 -9.09 -0.09 -5.99 16 15 C 0.12 1.48 7.33 -81.88 -0.60 0.88 16 16 C -0.05 -0.61 6.34 -26.64 -0.17 -0.78 16 17 C 0.12 1.82 2.84 -65.96 -0.19 1.63 16 18 H 0.09 1.12 7.64 -51.93 -0.40 0.72 16 19 C -0.15 -2.20 5.79 -24.45 -0.14 -2.34 16 20 C 0.13 2.41 7.22 -2.53 -0.02 2.39 16 21 N -0.60 -13.38 2.74 -170.07 -0.47 -13.85 16 22 C -0.25 -6.60 10.50 -15.05 -0.16 -6.76 16 23 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 24 C 0.03 0.89 5.42 -17.43 -0.09 0.79 16 25 N -0.90 -26.63 13.97 55.49 0.78 -25.85 16 26 Si 0.88 21.46 24.64 -169.99 -4.19 17.27 16 27 H -0.29 -6.77 6.97 56.52 0.39 -6.38 16 28 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 29 H -0.27 -6.47 7.01 56.52 0.40 -6.08 16 30 C 0.11 2.18 4.71 -3.07 -0.01 2.16 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.98 7.03 -51.93 -0.37 0.62 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.24 7.43 -51.93 -0.39 0.85 16 37 H 0.10 1.86 5.94 -51.93 -0.31 1.55 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.23 6.92 -51.93 -0.36 0.88 16 40 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.09 1.13 7.89 -51.93 -0.41 0.72 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.07 0.86 6.68 -51.93 -0.35 0.52 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.06 1.18 4.46 -51.93 -0.23 0.95 16 51 H 0.03 0.73 3.44 -51.93 -0.18 0.56 16 LS Contribution 390.51 15.07 5.88 5.88 Total: -1.00 -31.65 390.51 -9.61 -41.26 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.90 Total: 2.73 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.29 Total: -3.36 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.21 Total: -54.78 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.19 Total: 17.27 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.65 -9.61 -41.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713721689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.597 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds