Wall clock time and date at job start Wed Apr 1 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46797 * 2 1 4 4 N 1.46900 * 109.46694 * 174.89597 * 3 2 1 5 5 C 1.46896 * 111.00435 * 76.02543 * 4 3 2 6 6 C 1.52999 * 109.46981 * 199.54210 * 5 4 3 7 7 N 1.46503 * 109.47106 * 174.88787 * 6 5 4 8 8 C 1.34777 * 120.00461 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99346 * 359.97438 * 8 7 6 10 10 C 1.50693 * 120.00141 * 180.02562 * 8 7 6 11 11 F 1.39899 * 110.67472 * 313.22858 * 10 8 7 12 12 C 1.54889 * 110.91569 * 76.57781 * 10 8 7 13 13 C 1.54273 * 104.19750 * 156.32916 * 12 10 8 14 14 C 1.53875 * 106.59407 * 336.39062 * 13 12 10 15 15 C 1.54261 * 106.60413 * 359.97438 * 14 13 12 16 16 C 1.46907 * 110.99649 * 199.98018 * 4 3 2 17 17 C 1.50693 * 109.47124 * 66.04403 * 16 4 3 18 18 O 1.21296 * 120.00344 * 359.97438 * 17 16 4 19 19 N 1.34783 * 120.00143 * 180.02562 * 17 16 4 20 20 C 1.37097 * 120.00147 * 180.02562 * 19 17 16 21 21 H 1.07994 * 119.99792 * 359.97438 * 20 19 17 22 22 C 1.38945 * 119.99735 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00443 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99862 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47204 * 89.99695 * 24 22 20 26 26 H 1.48500 * 109.46861 * 209.99568 * 24 22 20 27 27 H 1.48496 * 109.46992 * 329.99696 * 24 22 20 28 28 H 1.09001 * 109.47160 * 60.00058 * 1 2 3 29 29 H 1.09005 * 109.46847 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46667 * 299.99612 * 1 2 3 31 31 H 1.09005 * 109.46749 * 240.00295 * 2 1 3 32 32 H 1.09000 * 109.47445 * 120.00406 * 2 1 3 33 33 H 1.08994 * 109.46919 * 54.89630 * 3 2 1 34 34 H 1.09003 * 109.47441 * 294.89243 * 3 2 1 35 35 H 1.08995 * 109.46929 * 79.54416 * 5 4 3 36 36 H 1.08994 * 109.46934 * 319.54331 * 5 4 3 37 37 H 1.08999 * 109.47246 * 54.88950 * 6 5 4 38 38 H 1.08998 * 109.47208 * 294.88581 * 6 5 4 39 39 H 0.97001 * 119.99986 * 359.97438 * 7 6 5 40 40 H 1.08999 * 110.49120 * 37.65111 * 12 10 8 41 41 H 1.09005 * 110.48727 * 275.00545 * 12 10 8 42 42 H 1.08994 * 110.03232 * 217.10215 * 13 12 10 43 43 H 1.09005 * 110.02956 * 95.66884 * 13 12 10 44 44 H 1.09001 * 110.03473 * 119.28908 * 14 13 12 45 45 H 1.09007 * 110.02463 * 240.66330 * 14 13 12 46 46 H 1.08994 * 110.49013 * 142.29164 * 15 14 13 47 47 H 1.09005 * 110.48284 * 264.93992 * 15 14 13 48 48 H 1.08997 * 109.46919 * 186.03967 * 16 4 3 49 49 H 1.08995 * 109.47244 * 306.04364 * 16 4 3 50 50 H 0.97000 * 119.99320 * 0.02562 * 19 17 16 51 51 H 0.97000 * 120.00746 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 0.1232 5 6 4.1397 1.0745 -1.1483 6 6 5.5752 0.6147 -0.8858 7 7 6.1691 0.1310 -2.1347 8 6 7.4363 -0.3277 -2.1450 9 8 8.0851 -0.3397 -1.1204 10 6 8.0473 -0.8247 -3.4297 11 9 7.1674 -1.6853 -4.0947 12 6 8.4530 0.3586 -4.3431 13 6 9.5533 -0.2257 -5.2530 14 6 10.1560 -1.4243 -4.4996 15 6 9.4016 -1.5262 -3.1579 16 6 3.9907 2.7473 0.5959 17 6 3.5119 2.9811 2.0055 18 8 2.8315 2.1449 2.5616 19 7 3.8387 4.1199 2.6481 20 6 3.4036 4.3325 3.9307 21 1 2.7985 3.5875 4.4260 22 6 3.7401 5.5067 4.5928 23 7 4.4759 6.4133 3.9900 24 14 3.1466 5.7966 6.3402 25 1 4.1477 5.2623 7.2981 26 1 2.9717 7.2536 6.5682 27 1 1.8486 5.1045 6.5433 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8935 -0.5139 0.8899 33 1 1.6039 1.9820 0.8407 34 1 1.7533 1.9293 -0.9322 35 1 4.1506 1.9377 -1.8136 36 1 3.5780 0.2644 -1.6133 37 1 5.5703 -0.1898 -0.1504 38 1 6.1609 1.4515 -0.5052 39 1 5.6500 0.1403 -2.9541 40 1 8.8477 1.1821 -3.7479 41 1 7.6022 0.6904 -4.9382 42 1 10.3223 0.5243 -5.4378 43 1 9.1202 -0.5574 -6.1967 44 1 10.0156 -2.3377 -5.0777 45 1 11.2179 -1.2563 -4.3195 46 1 9.2425 -2.5702 -2.8880 47 1 9.9498 -1.0071 -2.3717 48 1 5.0804 2.7569 0.5761 49 1 3.6085 3.5352 -0.0530 50 1 4.3818 4.7891 2.2030 51 1 4.7111 7.2329 4.4523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714652758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:57 Heat of formation + Delta-G solvation = -133.007635 kcal Electronic energy + Delta-G solvation = -30403.261967 eV Core-core repulsion = 26058.334370 eV Total energy + Delta-G solvation = -4344.927597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.20892 -40.03915 -38.84818 -37.41911 -36.88677 -35.01814 -33.84919 -33.01079 -31.20966 -30.18096 -29.30061 -28.61975 -27.46777 -24.99541 -24.14683 -22.54534 -21.77633 -20.94493 -20.74981 -20.10830 -19.17103 -18.26224 -17.84990 -16.84630 -16.44698 -15.96324 -15.75026 -15.54468 -15.37084 -14.98950 -14.89560 -14.68166 -14.32386 -14.20516 -13.98390 -13.69414 -13.61228 -13.44554 -13.27728 -13.00709 -12.47849 -12.44643 -12.10112 -12.09615 -11.77458 -11.74116 -11.66914 -11.60630 -11.53071 -11.45844 -11.26932 -11.13296 -10.94478 -10.81222 -10.61654 -10.38758 -10.29638 -10.20718 -9.98347 -9.45565 -9.27947 -8.43481 -7.99173 -7.91557 -6.40594 -3.81241 2.18970 2.68759 3.18795 3.27365 3.32910 3.71725 3.83181 3.90322 3.96743 4.15367 4.23345 4.31411 4.73453 4.77933 4.83991 4.89671 4.95209 4.96630 5.05881 5.12447 5.22181 5.25403 5.29874 5.35561 5.41471 5.45252 5.55161 5.60718 5.66239 5.66690 5.69914 5.75675 5.85172 5.87293 5.88942 5.98297 6.00734 6.06921 6.17572 6.28148 6.29008 6.52729 6.57327 7.13998 7.24749 7.34052 7.56369 7.84130 8.07332 8.62752 9.19283 9.55532 10.07142 10.77223 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.002252 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.291634 B =12431.284198 C =14200.101781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.058 3.942 4 N -0.512 5.512 5 C 0.044 3.956 6 C 0.119 3.881 7 N -0.718 5.718 8 C 0.505 3.495 9 O -0.518 6.518 10 C 0.096 3.904 11 F -0.189 7.189 12 C -0.137 4.137 13 C -0.123 4.123 14 C -0.125 4.125 15 C -0.129 4.129 16 C 0.042 3.958 17 C 0.443 3.557 18 O -0.575 6.575 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.023 0.977 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.402 0.598 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.048 0.952 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.222 -11.450 -21.588 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.069 4.069 4 N -0.236 5.236 5 C -0.085 4.085 6 C -0.005 4.005 7 N -0.370 5.370 8 C 0.288 3.712 9 O -0.393 6.393 10 C 0.074 3.926 11 F -0.170 7.170 12 C -0.175 4.175 13 C -0.161 4.161 14 C -0.163 4.163 15 C -0.167 4.167 16 C -0.089 4.089 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.236 0.764 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.119 0.881 48 H 0.107 0.893 49 H 0.066 0.934 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.385 -12.190 -20.030 24.302 hybrid contribution -0.452 1.270 -0.478 1.430 sum 5.933 -10.920 -20.508 23.980 Atomic orbital electron populations 1.21717 0.96079 1.01187 1.01715 1.21432 0.94937 0.96689 1.01997 1.22250 0.86288 0.97622 1.00785 1.61409 1.06630 1.29428 1.26143 1.22255 0.94285 1.00220 0.91725 1.21443 0.93099 1.00533 0.85377 1.45925 1.13848 1.64191 1.12986 1.20537 0.82169 0.78434 0.90067 1.90770 1.60932 1.54420 1.33143 1.22128 0.89656 0.90862 0.89949 1.92889 1.70486 1.71694 1.81897 1.22943 1.00342 0.96462 0.97773 1.22133 0.97568 0.97758 0.98600 1.22163 1.00135 0.98684 0.95325 1.22822 0.92647 1.01970 0.99246 1.21949 1.00848 0.89849 0.96259 1.19691 0.85919 0.83853 0.87659 1.90513 1.42108 1.45085 1.68157 1.41873 1.47155 1.16830 1.14285 1.19686 1.30181 1.03395 0.89432 0.87905 1.25254 0.96962 0.95535 1.00219 1.69606 1.37422 1.09065 1.38282 0.85868 0.79263 0.77301 0.81921 1.20384 1.20974 1.19441 0.93385 0.93004 0.92297 0.93216 0.90689 0.88346 0.95919 0.94244 0.90123 0.89897 0.90933 0.76424 0.89071 0.89613 0.90773 0.91051 0.91183 0.90787 0.89889 0.88086 0.89321 0.93384 0.77541 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.11 -1.55 5.98 -26.73 -0.16 -1.71 16 3 C 0.06 0.90 4.46 -3.82 -0.02 0.88 16 4 N -0.51 -8.13 4.10 -236.08 -0.97 -9.10 16 5 C 0.04 0.52 4.92 -3.83 -0.02 0.50 16 6 C 0.12 1.48 5.71 -4.04 -0.02 1.46 16 7 N -0.72 -7.41 5.53 -60.30 -0.33 -7.75 16 8 C 0.50 5.99 6.91 -10.99 -0.08 5.91 16 9 O -0.52 -8.10 15.69 5.56 0.09 -8.01 16 10 C 0.10 0.87 1.37 -89.77 -0.12 0.75 16 11 F -0.19 -1.84 16.88 2.25 0.04 -1.80 16 12 C -0.14 -0.94 6.07 -25.07 -0.15 -1.09 16 13 C -0.12 -0.71 6.80 -25.61 -0.17 -0.88 16 14 C -0.13 -0.79 6.80 -25.62 -0.17 -0.96 16 15 C -0.13 -1.10 5.80 -25.06 -0.15 -1.24 16 16 C 0.04 0.74 5.27 -4.98 -0.03 0.71 16 17 C 0.44 10.33 7.29 -10.99 -0.08 10.25 16 18 O -0.57 -15.19 14.12 5.54 0.08 -15.11 16 19 N -0.56 -14.25 5.29 -10.97 -0.06 -14.31 16 20 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 24 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.59 6.91 -51.93 -0.36 0.23 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.89 5.85 -51.93 -0.30 1.59 16 34 H 0.02 0.31 8.00 -51.93 -0.42 -0.10 16 35 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16 36 H 0.08 0.84 6.58 -51.93 -0.34 0.50 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.07 0.99 6.95 -51.93 -0.36 0.63 16 39 H 0.40 3.09 8.40 -40.82 -0.34 2.75 16 40 H 0.09 0.64 8.05 -51.93 -0.42 0.22 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.10 0.96 7.31 -51.93 -0.38 0.58 16 48 H 0.09 1.44 6.71 -51.93 -0.35 1.09 16 49 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 50 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 51 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 411.80 15.07 6.21 6.21 Total: -1.00 -32.43 411.80 -8.88 -41.31 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -8.59 Total: 11.12 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.04 Total: 5.21 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.64 Total: -55.06 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.17 Total: -23.12 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.43 -8.88 -41.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714652758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.698 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds