Wall clock time and date at job start Wed Apr 1 2020 02:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47290 * 2 1 4 4 N 1.46495 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99617 * 264.09328 * 4 3 2 6 6 H 1.07998 * 119.99765 * 188.65820 * 5 4 3 7 7 C 1.38809 * 120.00305 * 8.66092 * 5 4 3 8 8 N 1.31623 * 119.99812 * 29.01749 * 7 5 4 9 9 Si 1.86803 * 120.00258 * 209.01999 * 7 5 4 10 10 H 1.48500 * 109.47015 * 94.98804 * 9 7 5 11 11 H 1.48493 * 109.47194 * 214.99122 * 9 7 5 12 12 H 1.48504 * 109.46780 * 334.99118 * 9 7 5 13 13 C 1.46499 * 120.00274 * 84.10289 * 4 3 2 14 14 C 1.52999 * 109.46890 * 269.99502 * 13 4 3 15 15 N 1.46501 * 109.47425 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00284 * 179.97438 * 15 14 13 17 17 O 1.21599 * 119.99807 * 0.02562 * 16 15 14 18 18 C 1.47519 * 120.00139 * 179.97438 * 16 15 14 19 19 C 1.39792 * 120.06999 * 180.02562 * 18 16 15 20 20 C 1.37608 * 119.93367 * 179.97438 * 19 18 16 21 21 C 1.39217 * 120.06450 * 359.97438 * 20 19 18 22 22 N 1.39051 * 119.93223 * 180.02562 * 21 20 19 23 23 C 1.48232 * 111.00426 * 128.46220 * 22 21 20 24 24 C 1.51112 * 105.43904 * 144.85493 * 23 22 21 25 25 C 1.31116 * 109.37370 * 343.14233 * 24 23 22 26 26 C 1.48219 * 111.00339 * 242.10758 * 22 21 20 27 27 C 1.39219 * 120.14063 * 0.29311 * 21 20 19 28 28 C 1.37605 * 120.06734 * 359.44942 * 27 21 20 29 29 H 1.09004 * 109.47102 * 59.99674 * 1 2 3 30 30 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47310 * 299.99927 * 1 2 3 32 32 H 1.09009 * 109.46938 * 240.00173 * 2 1 3 33 33 H 1.08999 * 109.47519 * 120.00105 * 2 1 3 34 34 H 1.08999 * 109.46873 * 60.00349 * 3 2 1 35 35 H 1.08999 * 109.46926 * 300.00469 * 3 2 1 36 36 H 0.96998 * 119.99852 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47220 * 149.99763 * 13 4 3 38 38 H 1.08999 * 109.47124 * 29.99453 * 13 4 3 39 39 H 1.09000 * 109.47284 * 59.99408 * 14 13 4 40 40 H 1.09008 * 109.47097 * 299.99798 * 14 13 4 41 41 H 0.97000 * 119.99485 * 0.02562 * 15 14 13 42 42 H 1.08001 * 120.03530 * 359.97438 * 19 18 16 43 43 H 1.07999 * 119.96757 * 179.97438 * 20 19 18 44 44 H 1.08997 * 110.26554 * 263.88017 * 23 22 21 45 45 H 1.09004 * 110.26083 * 25.84167 * 23 22 21 46 46 H 1.08005 * 125.26869 * 163.07803 * 24 23 22 47 47 H 1.08002 * 125.24845 * 179.97438 * 25 24 23 48 48 H 1.09000 * 110.26355 * 334.06664 * 26 22 21 49 49 H 1.09001 * 110.27215 * 96.03343 * 26 22 21 50 50 H 1.08005 * 119.96334 * 179.71102 * 27 21 20 51 51 H 1.08003 * 120.03849 * 180.27006 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.5643 1.1788 6 1 5.2609 1.7048 1.1692 7 6 3.5084 1.5071 2.3866 8 7 2.3988 0.8058 2.4835 9 14 4.1658 2.4254 3.8746 10 1 3.5044 3.7516 3.9698 11 1 3.8835 1.6421 5.1042 12 1 5.6321 2.6125 3.7327 13 6 4.2370 1.3122 -1.2629 14 6 4.4919 -0.1680 -1.5542 15 7 5.2234 -0.2983 -2.8169 16 6 5.5605 -1.5192 -3.2774 17 8 5.2570 -2.5126 -2.6452 18 6 6.2965 -1.6505 -4.5491 19 6 6.6465 -2.9162 -5.0284 20 6 7.3326 -3.0354 -6.2153 21 6 7.6778 -1.8972 -6.9387 22 7 8.3707 -2.0209 -8.1379 23 6 7.6954 -1.2683 -9.2218 24 6 8.8079 -0.7296 -10.0911 25 6 9.9399 -0.7836 -9.4318 26 6 9.6953 -1.3606 -8.0567 27 6 7.3357 -0.6350 -6.4612 28 6 6.6449 -0.5095 -5.2778 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 1.9222 0.7662 3.3274 37 1 5.1894 1.8367 -1.1864 38 1 3.6476 1.7454 -2.0711 39 1 3.5394 -0.6925 -1.6307 40 1 5.0813 -0.6011 -0.7460 41 1 5.4657 0.4942 -3.3210 42 1 6.3786 -3.7996 -4.4679 43 1 7.6036 -4.0130 -6.5859 44 1 7.0530 -1.9330 -9.7993 45 1 7.1113 -0.4480 -8.8046 46 1 8.6883 -0.3591 -11.0985 47 1 10.8987 -0.4635 -9.8123 48 1 9.6756 -0.5654 -7.3116 49 1 10.4664 -2.0902 -7.8092 50 1 7.6090 0.2464 -7.0225 51 1 6.3759 0.4697 -4.9100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714658634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:08 Heat of formation + Delta-G solvation = 60.038841 kcal Electronic energy + Delta-G solvation = -29057.316521 eV Core-core repulsion = 25151.529272 eV Total energy + Delta-G solvation = -3905.787249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.01202 -39.65201 -37.78518 -36.54955 -34.47483 -33.27553 -31.96105 -31.59646 -31.11133 -29.40254 -28.88423 -27.63674 -25.50977 -24.44896 -23.24001 -22.99519 -21.63988 -20.82326 -20.30706 -19.86702 -19.82499 -18.21212 -17.30813 -16.83680 -16.46329 -15.51541 -15.11492 -15.08121 -14.99747 -14.70289 -14.23166 -14.18155 -13.92334 -13.68530 -13.60179 -13.32092 -13.26567 -12.92961 -12.76294 -12.72802 -12.41016 -12.37679 -12.10903 -11.77370 -11.63325 -11.53256 -11.33470 -11.05238 -10.85550 -10.63821 -10.40551 -10.13476 -9.98577 -9.93505 -9.86584 -9.65842 -9.29174 -9.20081 -9.00743 -8.81857 -8.58035 -8.36003 -6.96354 -5.81510 -3.10240 0.55223 1.09796 1.66010 2.81580 3.35761 3.39347 3.42549 3.48365 3.49558 3.72219 4.18480 4.34838 4.49310 4.51291 4.58081 4.79350 4.90899 5.00293 5.03652 5.05648 5.13156 5.25964 5.27563 5.29332 5.48791 5.51736 5.68654 5.80847 5.85129 5.86027 5.92702 5.94299 6.05347 6.16634 6.18676 6.22127 6.28149 6.32918 6.43074 6.52969 6.64543 6.66065 6.68137 6.86100 6.93742 6.99985 7.16161 7.25689 7.65164 7.74338 7.76458 8.12042 8.30028 8.44237 9.19748 9.81885 10.26726 11.22287 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.001924 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.389866 B =14551.670371 C =15043.396936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.174 3.826 4 N -0.590 5.590 5 C -0.260 4.260 6 H 0.075 0.925 7 C 0.004 3.996 8 N -0.885 5.885 9 Si 0.892 3.108 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.143 3.857 14 C 0.089 3.911 15 N -0.719 5.719 16 C 0.548 3.452 17 O -0.537 6.537 18 C -0.127 4.127 19 C -0.054 4.054 20 C -0.100 4.100 21 C 0.094 3.906 22 N -0.471 5.471 23 C 0.051 3.949 24 C -0.168 4.168 25 C -0.168 4.168 26 C 0.054 3.946 27 C -0.159 4.159 28 C -0.076 4.076 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.022 0.978 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.005 0.995 36 H 0.253 0.747 37 H 0.050 0.950 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.393 0.607 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.066 0.934 49 H 0.091 0.909 50 H 0.126 0.874 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.705 -1.752 -24.195 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.175 4.175 3 C 0.049 3.951 4 N -0.310 5.310 5 C -0.388 4.388 6 H 0.093 0.907 7 C -0.195 4.195 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.216 1.216 11 H -0.221 1.221 12 H -0.206 1.206 13 C 0.014 3.986 14 C -0.036 4.036 15 N -0.370 5.370 16 C 0.334 3.666 17 O -0.416 6.416 18 C -0.130 4.130 19 C -0.074 4.074 20 C -0.118 4.118 21 C -0.001 4.001 22 N -0.192 5.192 23 C -0.074 4.074 24 C -0.186 4.186 25 C -0.186 4.186 26 C -0.071 4.071 27 C -0.179 4.179 28 C -0.095 4.095 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.023 0.977 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.228 0.772 42 H 0.159 0.841 43 H 0.154 0.846 44 H 0.109 0.891 45 H 0.085 0.915 46 H 0.156 0.844 47 H 0.156 0.844 48 H 0.084 0.916 49 H 0.109 0.891 50 H 0.144 0.856 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.392 -3.035 -23.632 25.994 hybrid contribution 0.346 1.571 0.689 1.750 sum 10.738 -1.465 -22.943 25.374 Atomic orbital electron populations 1.21629 0.98584 0.99385 0.99931 1.22282 0.92907 1.00470 1.01811 1.20819 0.81634 0.94539 0.98139 1.44257 1.01818 1.83538 1.01414 1.19245 0.92498 1.43730 0.83365 0.90736 1.24707 0.97898 0.99670 0.97192 1.70181 1.19682 1.38030 1.25019 0.86409 0.78404 0.80311 0.82640 1.21636 1.22062 1.20623 1.20953 0.96386 0.91709 0.89507 1.22779 0.95999 1.01717 0.83126 1.46145 1.57939 1.07387 1.25518 1.18211 0.79584 0.83935 0.84851 1.90799 1.54793 1.37114 1.58859 1.20202 1.02188 0.94374 0.96273 1.21286 0.94256 0.97238 0.94580 1.20955 0.98414 0.98337 0.94124 1.19145 0.96725 0.92770 0.91475 1.63098 1.02631 1.50297 1.03206 1.22262 0.96426 0.96718 0.92034 1.23624 0.94667 1.00606 0.99743 1.23626 0.99016 1.00425 0.95524 1.22222 0.91447 0.97547 0.95887 1.21521 1.01396 0.97530 0.97474 1.21188 0.96287 0.98005 0.94058 0.95101 0.94730 0.93078 0.95922 0.87843 0.89960 0.97660 0.93688 0.93194 0.93911 0.91417 0.91301 0.77242 0.84087 0.84607 0.89087 0.91451 0.84359 0.84384 0.91618 0.89062 0.85641 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.91 37.15 0.37 -2.29 16 2 C -0.14 -3.05 5.63 -26.73 -0.15 -3.20 16 3 C 0.17 4.03 4.92 -4.04 -0.02 4.01 16 4 N -0.59 -13.97 2.54 -173.24 -0.44 -14.41 16 5 C -0.26 -6.81 9.66 -15.06 -0.15 -6.96 16 6 H 0.07 1.94 7.96 -52.49 -0.42 1.52 16 7 C 0.00 0.10 4.77 -17.43 -0.08 0.02 16 8 N -0.88 -24.14 8.80 55.49 0.49 -23.65 16 9 Si 0.89 21.21 29.64 -169.99 -5.04 16.17 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.14 2.73 5.82 -4.04 -0.02 2.71 16 14 C 0.09 1.70 5.88 -4.04 -0.02 1.67 16 15 N -0.72 -10.91 5.50 -61.35 -0.34 -11.25 16 16 C 0.55 8.95 7.76 -12.48 -0.10 8.85 16 17 O -0.54 -11.03 16.34 5.28 0.09 -10.95 16 18 C -0.13 -1.62 5.88 -104.95 -0.62 -2.24 16 19 C -0.05 -0.64 9.58 -39.23 -0.38 -1.02 16 20 C -0.10 -1.01 9.95 -39.45 -0.39 -1.40 16 21 C 0.09 0.90 4.90 -83.86 -0.41 0.49 16 22 N -0.47 -4.08 5.56 -171.17 -0.95 -5.03 16 23 C 0.05 0.37 6.42 -4.04 -0.03 0.35 16 24 C -0.17 -1.00 10.96 -35.85 -0.39 -1.39 16 25 C -0.17 -1.00 10.95 -35.85 -0.39 -1.39 16 26 C 0.05 0.40 6.47 -4.04 -0.03 0.37 16 27 C -0.16 -1.43 7.67 -39.45 -0.30 -1.74 16 28 C -0.08 -0.76 9.53 -39.23 -0.37 -1.14 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.02 0.50 5.97 -51.92 -0.31 0.19 16 33 H 0.10 2.71 6.17 -51.93 -0.32 2.39 16 34 H 0.08 2.13 6.02 -51.93 -0.31 1.81 16 35 H 0.01 0.11 7.98 -51.93 -0.41 -0.30 16 36 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 38 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 39 H 0.07 1.43 5.92 -51.93 -0.31 1.12 16 40 H 0.07 1.52 8.14 -51.92 -0.42 1.10 16 41 H 0.39 4.59 6.49 -40.82 -0.26 4.33 16 42 H 0.14 1.71 7.64 -52.49 -0.40 1.31 16 43 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.47 6.16 -51.93 -0.32 0.15 16 46 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 47 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 48 H 0.07 0.48 6.85 -51.93 -0.36 0.12 16 49 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.13 0.92 7.00 -52.48 -0.37 0.55 16 51 H 0.13 1.02 6.39 -52.48 -0.34 0.69 16 LS Contribution 404.24 15.07 6.09 6.09 Total: -1.00 -30.69 404.24 -11.48 -42.17 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.90 Total: 5.15 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.48 Total: -4.29 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -1.24 Total: -54.34 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.04 Total: 16.17 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.69 -11.48 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714658634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.211 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds