Wall clock time and date at job start Wed Apr 1 2020 02:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47290 * 2 1 4 4 N 1.46495 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99617 * 264.09328 * 4 3 2 6 6 H 1.07998 * 119.99765 * 188.65820 * 5 4 3 7 7 C 1.38809 * 120.00305 * 8.66092 * 5 4 3 8 8 N 1.31623 * 119.99812 * 29.01749 * 7 5 4 9 9 Si 1.86803 * 120.00258 * 209.01999 * 7 5 4 10 10 H 1.48500 * 109.47015 * 94.98804 * 9 7 5 11 11 H 1.48493 * 109.47194 * 214.99122 * 9 7 5 12 12 H 1.48504 * 109.46780 * 334.99118 * 9 7 5 13 13 C 1.46499 * 120.00274 * 84.10289 * 4 3 2 14 14 C 1.52999 * 109.46890 * 269.99502 * 13 4 3 15 15 N 1.46501 * 109.47425 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00284 * 179.97438 * 15 14 13 17 17 O 1.21599 * 119.99807 * 0.02562 * 16 15 14 18 18 C 1.47519 * 120.00139 * 179.97438 * 16 15 14 19 19 C 1.39792 * 120.06999 * 180.02562 * 18 16 15 20 20 C 1.37608 * 119.93367 * 179.97438 * 19 18 16 21 21 C 1.39217 * 120.06450 * 359.97438 * 20 19 18 22 22 N 1.39051 * 119.93223 * 180.02562 * 21 20 19 23 23 C 1.48232 * 111.00426 * 128.46220 * 22 21 20 24 24 C 1.51112 * 105.43904 * 144.85493 * 23 22 21 25 25 C 1.31116 * 109.37370 * 343.14233 * 24 23 22 26 26 C 1.48219 * 111.00339 * 242.10758 * 22 21 20 27 27 C 1.39219 * 120.14063 * 0.29311 * 21 20 19 28 28 C 1.37605 * 120.06734 * 359.44942 * 27 21 20 29 29 H 1.09004 * 109.47102 * 59.99674 * 1 2 3 30 30 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47310 * 299.99927 * 1 2 3 32 32 H 1.09009 * 109.46938 * 240.00173 * 2 1 3 33 33 H 1.08999 * 109.47519 * 120.00105 * 2 1 3 34 34 H 1.08999 * 109.46873 * 60.00349 * 3 2 1 35 35 H 1.08999 * 109.46926 * 300.00469 * 3 2 1 36 36 H 0.96998 * 119.99852 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47220 * 149.99763 * 13 4 3 38 38 H 1.08999 * 109.47124 * 29.99453 * 13 4 3 39 39 H 1.09000 * 109.47284 * 59.99408 * 14 13 4 40 40 H 1.09008 * 109.47097 * 299.99798 * 14 13 4 41 41 H 0.97000 * 119.99485 * 0.02562 * 15 14 13 42 42 H 1.08001 * 120.03530 * 359.97438 * 19 18 16 43 43 H 1.07999 * 119.96757 * 179.97438 * 20 19 18 44 44 H 1.08997 * 110.26554 * 263.88017 * 23 22 21 45 45 H 1.09004 * 110.26083 * 25.84167 * 23 22 21 46 46 H 1.08005 * 125.26869 * 163.07803 * 24 23 22 47 47 H 1.08002 * 125.24845 * 179.97438 * 25 24 23 48 48 H 1.09000 * 110.26355 * 334.06664 * 26 22 21 49 49 H 1.09001 * 110.27215 * 96.03343 * 26 22 21 50 50 H 1.08005 * 119.96334 * 179.71102 * 27 21 20 51 51 H 1.08003 * 120.03849 * 180.27006 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.5643 1.1788 6 1 5.2609 1.7048 1.1692 7 6 3.5084 1.5071 2.3866 8 7 2.3988 0.8058 2.4835 9 14 4.1658 2.4254 3.8746 10 1 3.5044 3.7516 3.9698 11 1 3.8835 1.6421 5.1042 12 1 5.6321 2.6125 3.7327 13 6 4.2370 1.3122 -1.2629 14 6 4.4919 -0.1680 -1.5542 15 7 5.2234 -0.2983 -2.8169 16 6 5.5605 -1.5192 -3.2774 17 8 5.2570 -2.5126 -2.6452 18 6 6.2965 -1.6505 -4.5491 19 6 6.6465 -2.9162 -5.0284 20 6 7.3326 -3.0354 -6.2153 21 6 7.6778 -1.8972 -6.9387 22 7 8.3707 -2.0209 -8.1379 23 6 7.6954 -1.2683 -9.2218 24 6 8.8079 -0.7296 -10.0911 25 6 9.9399 -0.7836 -9.4318 26 6 9.6953 -1.3606 -8.0567 27 6 7.3357 -0.6350 -6.4612 28 6 6.6449 -0.5095 -5.2778 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 1.9222 0.7662 3.3274 37 1 5.1894 1.8367 -1.1864 38 1 3.6476 1.7454 -2.0711 39 1 3.5394 -0.6925 -1.6307 40 1 5.0813 -0.6011 -0.7460 41 1 5.4657 0.4942 -3.3210 42 1 6.3786 -3.7996 -4.4679 43 1 7.6036 -4.0130 -6.5859 44 1 7.0530 -1.9330 -9.7993 45 1 7.1113 -0.4480 -8.8046 46 1 8.6883 -0.3591 -11.0985 47 1 10.8987 -0.4635 -9.8123 48 1 9.6756 -0.5654 -7.3116 49 1 10.4664 -2.0902 -7.8092 50 1 7.6090 0.2464 -7.0225 51 1 6.3759 0.4697 -4.9100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714658634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:06 Heat of formation + Delta-G solvation = 42.231831 kcal Electronic energy + Delta-G solvation = -29058.088691 eV Core-core repulsion = 25151.529272 eV Total energy + Delta-G solvation = -3906.559419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.76037 -40.77820 -38.73151 -38.24296 -35.99153 -34.02654 -33.75760 -33.18203 -32.10691 -30.45977 -29.39747 -29.00919 -27.36000 -25.62927 -24.52999 -23.82230 -22.67507 -22.37242 -21.82768 -21.16636 -20.31426 -19.21644 -18.73841 -18.08184 -17.44330 -16.87847 -16.56063 -16.41515 -15.95173 -15.72052 -15.65752 -15.45005 -15.18368 -14.78635 -14.69004 -14.47235 -14.33763 -14.20803 -14.05902 -13.86740 -13.47677 -13.30857 -13.14131 -13.04643 -12.91578 -12.79482 -12.65431 -12.41257 -12.32967 -12.23327 -12.17948 -11.82417 -11.70863 -11.57924 -11.17259 -11.03043 -10.63666 -10.34666 -10.17279 -10.09318 -9.72818 -9.37190 -8.87736 -7.81975 -5.11710 -0.35155 0.30420 1.23785 1.48557 1.52291 1.59007 1.73034 2.10470 2.57229 2.72925 2.77901 3.25726 3.60133 3.67962 3.76696 3.81926 3.88150 3.91250 4.20425 4.21617 4.29866 4.31925 4.47755 4.50684 4.52131 4.54076 4.54745 4.63330 4.68594 4.70081 4.84019 4.92241 4.94894 4.99108 5.05369 5.05744 5.12468 5.24710 5.25720 5.32638 5.40966 5.41504 5.42659 5.45149 5.51855 5.62346 5.66574 5.84289 5.89792 6.20561 6.23601 6.34344 6.52833 7.18255 7.21736 7.91398 8.31241 9.19431 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.001924 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.389866 B =14551.670371 C =15043.396936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.127 4.127 3 C 0.178 3.822 4 N -0.606 5.606 5 C -0.266 4.266 6 H 0.073 0.927 7 C -0.045 4.045 8 N -0.905 5.905 9 Si 0.950 3.050 10 H -0.289 1.289 11 H -0.303 1.303 12 H -0.275 1.275 13 C 0.145 3.855 14 C 0.110 3.890 15 N -0.704 5.704 16 C 0.547 3.453 17 O -0.590 6.590 18 C -0.148 4.148 19 C -0.062 4.062 20 C -0.103 4.103 21 C 0.103 3.897 22 N -0.485 5.485 23 C 0.046 3.954 24 C -0.169 4.169 25 C -0.170 4.170 26 C 0.050 3.950 27 C -0.154 4.154 28 C -0.065 4.065 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.022 0.978 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.030 0.970 36 H 0.246 0.754 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.030 0.970 41 H 0.414 0.586 42 H 0.128 0.872 43 H 0.147 0.853 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.067 0.933 49 H 0.091 0.909 50 H 0.150 0.850 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.853 0.080 -27.228 29.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.166 4.166 3 C 0.052 3.948 4 N -0.326 5.326 5 C -0.396 4.396 6 H 0.091 0.909 7 C -0.241 4.241 8 N -0.550 5.550 9 Si 0.780 3.220 10 H -0.216 1.216 11 H -0.230 1.230 12 H -0.200 1.200 13 C 0.018 3.982 14 C -0.016 4.016 15 N -0.356 5.356 16 C 0.336 3.664 17 O -0.472 6.472 18 C -0.151 4.151 19 C -0.082 4.082 20 C -0.122 4.122 21 C 0.008 3.992 22 N -0.207 5.207 23 C -0.080 4.080 24 C -0.187 4.187 25 C -0.188 4.188 26 C -0.075 4.075 27 C -0.173 4.173 28 C -0.084 4.084 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.252 0.748 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.176 0.824 47 H 0.175 0.825 48 H 0.085 0.915 49 H 0.109 0.891 50 H 0.168 0.832 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.571 -1.164 -26.717 29.139 hybrid contribution 0.075 0.952 1.481 1.762 sum 11.646 -0.212 -25.236 27.795 Atomic orbital electron populations 1.21530 0.96115 1.00375 1.00642 1.22082 0.95098 0.99706 0.99720 1.20722 0.81666 0.94604 0.97763 1.44444 1.02263 1.83743 1.02188 1.19461 0.92599 1.42965 0.84543 0.90948 1.25339 0.98724 1.00599 0.99435 1.70346 1.20731 1.38954 1.24990 0.85507 0.78055 0.78821 0.79627 1.21590 1.23033 1.19975 1.21090 0.97146 0.91438 0.88518 1.22216 0.94529 1.01200 0.83685 1.45841 1.57259 1.08244 1.24301 1.18781 0.78860 0.83210 0.85591 1.90769 1.56966 1.38785 1.60658 1.19934 1.04014 0.95824 0.95375 1.21255 0.94934 0.96730 0.95287 1.21035 0.98216 0.99371 0.93545 1.19315 0.95592 0.92787 0.91523 1.63107 1.03314 1.51271 1.02985 1.22350 0.96988 0.96772 0.91847 1.23787 0.94002 1.00447 1.00452 1.23777 0.99987 1.00365 0.94699 1.22293 0.90628 0.97595 0.97030 1.21741 1.00438 0.98152 0.96999 1.21380 0.95328 0.97923 0.93815 0.92633 0.93651 0.93998 0.95918 0.91925 0.92849 0.95191 0.94411 0.91793 0.90878 0.93718 0.95182 0.74793 0.85415 0.83564 0.89117 0.91039 0.82396 0.82492 0.91493 0.89125 0.83229 0.82992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.91 71.98 0.71 -4.18 16 2 C -0.13 -5.77 5.63 30.59 0.17 -5.59 16 3 C 0.18 8.21 4.92 86.38 0.42 8.64 16 4 N -0.61 -28.60 2.54 -702.01 -1.78 -30.38 16 5 C -0.27 -14.07 9.66 84.03 0.81 -13.26 16 6 H 0.07 3.78 7.96 -2.91 -0.02 3.76 16 7 C -0.04 -2.42 4.77 84.86 0.40 -2.02 16 8 N -0.90 -50.83 8.80 21.65 0.19 -50.63 16 9 Si 0.95 44.34 29.64 68.60 2.03 46.37 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 13 C 0.15 5.36 5.82 86.38 0.50 5.86 16 14 C 0.11 4.25 5.88 86.38 0.51 4.76 16 15 N -0.70 -20.89 5.50 -466.27 -2.57 -23.46 16 16 C 0.55 18.10 7.76 86.69 0.67 18.78 16 17 O -0.59 -25.44 16.34 -4.03 -0.07 -25.51 16 18 C -0.15 -3.70 5.88 -20.08 -0.12 -3.82 16 19 C -0.06 -1.50 9.58 22.50 0.22 -1.28 16 20 C -0.10 -2.00 9.95 22.36 0.22 -1.77 16 21 C 0.10 1.76 4.90 38.47 0.19 1.95 16 22 N -0.49 -7.32 5.56 -695.45 -3.87 -11.19 16 23 C 0.05 0.54 6.42 85.43 0.55 1.09 16 24 C -0.17 -1.48 10.96 25.66 0.28 -1.20 16 25 C -0.17 -1.52 10.95 25.66 0.28 -1.24 16 26 C 0.05 0.61 6.47 85.44 0.55 1.16 16 27 C -0.15 -2.31 7.67 22.36 0.17 -2.14 16 28 C -0.07 -1.15 9.53 22.50 0.21 -0.93 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.02 1.00 5.97 -2.38 -0.01 0.99 16 33 H 0.06 3.40 6.17 -2.39 -0.01 3.39 16 34 H 0.05 2.79 6.02 -2.39 -0.01 2.77 16 35 H 0.03 1.22 7.98 -2.39 -0.02 1.20 16 36 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 37 H 0.06 2.19 8.03 -2.39 -0.02 2.17 16 38 H 0.07 2.28 7.95 -2.39 -0.02 2.26 16 39 H 0.04 1.94 5.92 -2.39 -0.01 1.92 16 40 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.41 8.68 6.49 -92.71 -0.60 8.08 16 42 H 0.13 3.32 7.64 -2.91 -0.02 3.30 16 43 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 0.78 6.16 -2.38 -0.01 0.77 16 46 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 47 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 48 H 0.07 0.79 6.85 -2.39 -0.02 0.78 16 49 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.15 1.57 7.00 -2.91 -0.02 1.55 16 51 H 0.15 1.86 6.39 -2.91 -0.02 1.84 16 Total: -1.00 -69.13 404.24 1.04 -68.09 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.33 Total: 21.91 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 6.77 Total: 4.80 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -8.02 Total: -115.66 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.07 Total: -25.51 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -69.13 1.04 -68.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714658634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.318 kcal (2) G-P(sol) polarization free energy of solvation -69.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds