Wall clock time and date at job start Wed Apr 1 2020 02:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46858 * 2 1 4 4 F 1.39898 * 109.47293 * 240.00225 * 2 1 3 5 5 C 1.50693 * 109.47365 * 119.99665 * 2 1 3 6 6 O 1.21281 * 120.00095 * 0.02562 * 5 2 1 7 7 N 1.34780 * 120.00182 * 179.97438 * 5 2 1 8 8 C 1.46500 * 119.99910 * 180.02562 * 7 5 2 9 9 H 1.09002 * 109.47129 * 324.99754 * 8 7 5 10 10 C 1.52997 * 109.47473 * 85.00011 * 8 7 5 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47233 * 299.99657 * 11 10 8 13 13 C 1.52997 * 109.46817 * 60.00194 * 12 11 10 14 14 C 1.52999 * 109.46944 * 205.00356 * 8 7 5 15 15 H 1.09002 * 109.46716 * 299.99651 * 14 8 7 16 16 C 1.53002 * 109.47628 * 59.99681 * 14 8 7 17 17 N 1.46900 * 109.47191 * 185.00484 * 16 14 8 18 18 C 1.46900 * 110.99896 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.47158 * 179.97438 * 18 17 16 20 20 O 1.21292 * 119.99907 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99982 * 179.97438 * 19 18 17 22 22 C 1.37098 * 120.00361 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99583 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00325 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99554 * 180.02562 * 24 22 21 26 26 Si 1.86791 * 119.99954 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47359 * 90.00164 * 26 24 22 28 28 H 1.48501 * 109.47204 * 210.00273 * 26 24 22 29 29 H 1.48501 * 109.47255 * 330.00249 * 26 24 22 30 30 H 1.09006 * 109.47048 * 300.00192 * 1 2 3 31 31 H 1.09004 * 109.47178 * 60.00063 * 1 2 3 32 32 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47250 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47618 * 299.99810 * 3 2 1 35 35 H 1.08997 * 109.47643 * 60.00154 * 3 2 1 36 36 H 0.96994 * 120.00115 * 0.02562 * 7 5 2 37 37 H 1.09002 * 109.47153 * 59.99757 * 10 8 7 38 38 H 1.09001 * 109.46832 * 299.99948 * 10 8 7 39 39 H 1.08992 * 109.47399 * 59.99823 * 11 10 8 40 40 H 1.09004 * 109.46724 * 180.02562 * 11 10 8 41 41 H 1.08993 * 109.47662 * 180.02562 * 12 11 10 42 42 H 1.09002 * 109.47075 * 300.00932 * 12 11 10 43 43 H 1.09002 * 109.47153 * 60.00231 * 13 12 11 44 44 H 1.09001 * 109.47289 * 180.02562 * 13 12 11 45 45 H 1.09001 * 109.46463 * 305.00112 * 16 14 8 46 46 H 1.08993 * 109.46613 * 65.00049 * 16 14 8 47 47 H 1.00903 * 110.99731 * 303.95345 * 17 16 14 48 48 H 1.08993 * 109.47067 * 300.00219 * 18 17 16 49 49 H 1.09009 * 109.47182 * 59.99530 * 18 17 16 50 50 H 0.97000 * 120.00298 * 0.02562 * 21 19 18 51 51 H 0.97004 * 119.99566 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0324 -0.7103 1.2304 6 8 1.2443 -1.1716 2.0286 7 7 3.3575 -0.8339 1.4435 8 6 3.8458 -1.5249 2.6394 9 1 3.1735 -1.3260 3.4739 10 6 3.8968 -3.0307 2.3733 11 6 4.4062 -3.7523 3.6226 12 6 5.8089 -3.2475 3.9669 13 6 5.7579 -1.7417 4.2329 14 6 5.2485 -1.0199 2.9831 15 1 5.9209 -1.2188 2.1485 16 6 5.1976 0.4860 3.2492 17 7 6.5603 0.9921 3.4612 18 6 6.5504 2.4382 3.7196 19 6 7.9623 2.9201 3.9324 20 8 8.8860 2.1361 3.8739 21 7 8.1988 4.2224 4.1865 22 6 9.4833 4.6610 4.3795 23 1 10.3057 3.9628 4.3283 24 6 9.7270 6.0035 4.6420 25 7 10.9584 6.4238 4.8265 26 14 8.3046 7.2109 4.7312 27 1 7.8048 7.2848 6.1277 28 1 8.7676 8.5542 4.2995 29 1 7.2103 6.7537 3.8375 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.9878 -0.4653 0.8050 37 1 4.5692 -3.2296 1.5387 38 1 2.8974 -3.3904 2.1285 39 1 3.7336 -3.5534 4.4568 40 1 4.4430 -4.8251 3.4328 41 1 6.1721 -3.7619 4.8565 42 1 6.4816 -3.4464 3.1325 43 1 5.0852 -1.5428 5.0672 44 1 6.7573 -1.3820 4.4778 45 1 4.7515 0.9913 2.3926 46 1 4.5964 0.6776 4.1379 47 1 7.0187 0.4939 4.2094 48 1 6.1138 2.9568 2.8662 49 1 5.9583 2.6439 4.6115 50 1 7.4601 4.8494 4.2328 51 1 11.1285 7.3612 5.0094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716506365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:03 Heat of formation + Delta-G solvation = -141.847984 kcal Electronic energy + Delta-G solvation = -30933.186113 eV Core-core repulsion = 26587.875170 eV Total energy + Delta-G solvation = -4345.310943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -48.28322 -40.58050 -38.90114 -38.32856 -35.49536 -34.62469 -34.04815 -33.93194 -31.74515 -31.33405 -29.91551 -27.87174 -27.30135 -25.02518 -24.45898 -23.47068 -22.08747 -21.22912 -20.66794 -19.89989 -19.41231 -18.43593 -18.12077 -16.91317 -16.38353 -16.28318 -15.72874 -15.63420 -15.33945 -14.95982 -14.85199 -14.59901 -14.32087 -14.20991 -14.01828 -13.61621 -13.51338 -13.33347 -13.16856 -13.04720 -12.93486 -12.78760 -12.57121 -12.51575 -12.40172 -12.37142 -11.90825 -11.85366 -11.73468 -11.50260 -11.40546 -11.24797 -11.12735 -10.80406 -10.68608 -10.62127 -10.46987 -10.01015 -9.99827 -9.59838 -9.36992 -8.62290 -8.23020 -8.17473 -6.33433 -3.84950 2.07221 2.61403 3.00180 3.04363 3.12939 3.71133 3.88439 3.95681 4.00023 4.08000 4.19746 4.35083 4.45372 4.48140 4.60071 4.77591 4.90410 4.98215 5.02251 5.08267 5.09729 5.13824 5.18607 5.20061 5.22416 5.24217 5.43908 5.48791 5.50248 5.54806 5.59008 5.66056 5.68909 5.70968 5.77872 5.80655 5.86536 5.89104 5.93143 5.96192 6.08491 6.12865 6.24937 7.03703 7.05301 7.52597 7.55979 7.71445 8.12022 8.57225 8.92532 9.39930 9.79937 10.79687 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.002545 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.290688 B =11000.392849 C =12953.360035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 C -0.176 4.176 4 F -0.194 7.194 5 C 0.502 3.498 6 O -0.524 6.524 7 N -0.713 5.713 8 C 0.151 3.849 9 H 0.089 0.911 10 C -0.127 4.127 11 C -0.116 4.116 12 C -0.120 4.120 13 C -0.115 4.115 14 C -0.092 4.092 15 H 0.089 0.911 16 C 0.063 3.937 17 N -0.667 5.667 18 C 0.048 3.952 19 C 0.450 3.550 20 O -0.565 6.565 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.405 0.595 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.028 0.972 47 H 0.351 0.649 48 H 0.086 0.914 49 H 0.044 0.956 50 H 0.370 0.630 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.733 -14.624 -7.182 27.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.080 3.920 3 C -0.233 4.233 4 F -0.175 7.175 5 C 0.285 3.715 6 O -0.399 6.399 7 N -0.364 5.364 8 C 0.047 3.953 9 H 0.108 0.892 10 C -0.166 4.166 11 C -0.154 4.154 12 C -0.158 4.158 13 C -0.153 4.153 14 C -0.111 4.111 15 H 0.108 0.892 16 C -0.067 4.067 17 N -0.301 5.301 18 C -0.085 4.085 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.195 1.195 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.240 0.760 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.172 0.828 48 H 0.104 0.896 49 H 0.062 0.938 50 H 0.203 0.797 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.358 -15.245 -7.281 27.232 hybrid contribution -0.996 1.404 0.543 1.806 sum -22.355 -13.841 -6.738 27.142 Atomic orbital electron populations 1.22169 0.90886 1.04579 1.03931 1.21216 0.96942 0.93029 0.80778 1.22437 1.02995 0.93001 1.04900 1.92928 1.90259 1.82692 1.51612 1.20798 0.82978 0.79996 0.87711 1.90728 1.55231 1.47415 1.46547 1.46134 1.06759 1.57773 1.25686 1.21081 0.95322 0.91560 0.87383 0.89246 1.21897 1.01768 0.94259 0.98676 1.21496 0.96842 0.99558 0.97493 1.21553 0.96822 0.95577 1.01831 1.21596 1.02076 0.95016 0.96626 1.21453 0.95173 0.94493 0.99999 0.89237 1.21995 0.90229 0.94199 1.00243 1.60106 1.16068 1.02796 1.51121 1.21703 0.96463 0.89904 1.00453 1.19698 0.89924 0.82973 0.83878 1.90565 1.45131 1.54221 1.54722 1.42210 1.08644 1.07433 1.64699 1.19432 0.83777 0.94604 1.45581 0.86275 1.25043 0.96613 0.96949 0.97571 1.69625 1.18549 1.16490 1.47423 0.86669 0.82096 0.81761 0.78838 1.19662 1.20146 1.19499 0.89886 0.90628 0.90674 0.90598 0.89872 0.89861 0.75958 0.91508 0.91562 0.91829 0.91737 0.91684 0.91585 0.91889 0.90463 0.91179 0.95391 0.82835 0.89591 0.93840 0.79710 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 8.22 37.16 0.31 -0.83 16 2 C 0.10 0.82 1.54 -91.77 -0.14 0.68 16 3 C -0.18 -1.08 8.82 37.16 0.33 -0.75 16 4 F -0.19 -1.84 16.79 2.25 0.04 -1.80 16 5 C 0.50 4.99 6.84 -10.99 -0.08 4.91 16 6 O -0.52 -6.76 15.64 5.56 0.09 -6.68 16 7 N -0.71 -6.10 4.20 -53.81 -0.23 -6.32 16 8 C 0.15 1.35 1.90 -67.93 -0.13 1.22 16 9 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 10 C -0.13 -1.09 5.49 -26.73 -0.15 -1.24 16 11 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 12 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 13 C -0.12 -1.04 4.98 -26.70 -0.13 -1.17 16 14 C -0.09 -0.84 1.98 -90.59 -0.18 -1.02 16 15 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 16 C 0.06 0.67 5.06 -3.82 -0.02 0.65 16 17 N -0.67 -9.61 6.12 -115.06 -0.70 -10.32 16 18 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 19 C 0.45 9.99 7.82 -10.99 -0.09 9.91 16 20 O -0.56 -14.89 15.78 5.55 0.09 -14.81 16 21 N -0.59 -13.86 5.09 -10.96 -0.06 -13.91 16 22 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 23 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -25.57 13.96 55.50 0.77 -24.79 16 26 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 30 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.08 0.44 7.57 -51.93 -0.39 0.05 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.41 2.97 7.81 -40.82 -0.32 2.65 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.79 6.68 -51.93 -0.35 0.44 16 45 H 0.07 0.70 7.30 -51.93 -0.38 0.32 16 46 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.35 5.29 6.69 -39.29 -0.26 5.03 16 48 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 50 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 51 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 407.64 15.07 6.14 6.14 Total: -1.00 -33.39 407.64 -8.09 -41.48 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -8.64 Total: 13.37 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -0.87 Total: 3.22 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.21 Total: -55.35 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.17 Total: -21.48 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.39 -8.09 -41.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716506365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.370 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds