Wall clock time and date at job start Wed Apr 1 2020 03:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.64490 * 2 1 4 4 C 1.54599 * 110.72060 * 236.84742 * 2 1 3 5 5 C 1.53997 * 105.13650 * 219.68381 * 4 2 1 6 6 N 1.47897 * 107.05808 * 358.77883 * 5 4 2 7 7 C 1.46906 * 110.99827 * 145.84479 * 6 5 4 8 8 C 1.50697 * 109.46638 * 183.35780 * 7 6 5 9 9 O 1.21279 * 120.00579 * 353.86255 * 8 7 6 10 10 N 1.34783 * 119.99679 * 173.86551 * 8 7 6 11 11 C 1.46497 * 120.00244 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47428 * 179.97438 * 11 10 8 13 13 C 1.38256 * 120.02141 * 269.72692 * 12 11 10 14 14 C 1.38138 * 119.96111 * 179.78787 * 13 12 11 15 15 C 1.38447 * 120.10909 * 0.44457 * 14 13 12 16 16 C 1.38077 * 119.92663 * 359.80952 * 15 14 13 17 17 C 1.38145 * 120.01691 * 89.99863 * 12 11 10 18 18 C 1.50781 * 108.86068 * 180.02562 * 16 15 14 19 19 N 1.46633 * 107.69932 * 359.97438 * 18 16 15 20 20 C 1.36942 * 126.56342 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99734 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00181 * 180.02562 * 20 19 18 23 23 N 1.31621 * 120.00106 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00041 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46911 * 59.99616 * 24 22 20 26 26 H 1.48497 * 109.46921 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46773 * 299.99619 * 24 22 20 28 28 C 1.46641 * 106.87856 * 0.02562 * 19 18 16 29 29 C 1.48526 * 105.82239 * 25.33001 * 6 5 4 30 30 H 1.08997 * 109.47351 * 181.69809 * 1 2 3 31 31 H 1.08999 * 109.47410 * 61.69627 * 1 2 3 32 32 H 1.09001 * 109.46595 * 301.69647 * 1 2 3 33 33 H 1.08993 * 110.30730 * 338.60076 * 4 2 1 34 34 H 1.09002 * 110.30556 * 100.67047 * 4 2 1 35 35 H 1.08997 * 109.91489 * 118.13374 * 5 4 2 36 36 H 1.08998 * 109.91278 * 239.22288 * 5 4 2 37 37 H 1.08997 * 109.46795 * 303.36011 * 7 6 5 38 38 H 1.08996 * 109.47010 * 63.36002 * 7 6 5 39 39 H 0.97004 * 119.99814 * 359.97438 * 10 8 7 40 40 H 1.09000 * 109.47532 * 300.00367 * 11 10 8 41 41 H 1.09003 * 109.47171 * 59.99919 * 11 10 8 42 42 H 1.07998 * 120.01709 * 0.02562 * 13 12 11 43 43 H 1.08001 * 119.95018 * 180.23193 * 14 13 12 44 44 H 1.08001 * 119.94787 * 359.97438 * 17 12 11 45 45 H 1.08997 * 109.81194 * 119.54221 * 18 16 15 46 46 H 1.08999 * 109.80529 * 240.45092 * 18 16 15 47 47 H 0.96997 * 120.00044 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.81134 * 119.54033 * 28 19 18 49 49 H 1.08991 * 109.80871 * 240.38268 * 28 19 18 50 50 H 1.09009 * 110.66686 * 202.36110 * 29 6 5 51 51 H 1.08998 * 110.66906 * 79.23301 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0770 -0.7908 -1.2106 5 6 3.2893 -1.5698 -0.6675 6 7 3.4318 -1.2106 0.7601 7 6 3.9212 -2.3525 1.5440 8 6 3.9750 -1.9747 3.0019 9 8 3.7463 -0.8331 3.3414 10 7 4.2773 -2.9056 3.9285 11 6 4.3302 -2.5384 5.3457 12 6 4.6861 -3.7514 6.1661 13 6 3.6872 -4.5702 6.6594 14 6 4.0150 -5.6842 7.4076 15 6 5.3420 -5.9772 7.6721 16 6 6.3393 -5.1566 7.1838 17 6 6.0103 -4.0427 6.4303 18 6 7.6762 -5.7039 7.6159 19 7 7.4283 -6.9160 8.4030 20 6 8.3734 -7.7190 8.9838 21 1 9.4216 -7.4796 8.8822 22 6 7.9841 -8.8406 9.7030 23 7 6.7066 -9.1321 9.8272 24 14 9.2733 -9.9356 10.4958 25 1 10.0656 -9.1422 11.4694 26 1 8.6036 -11.0579 11.2009 27 1 10.1753 -10.4768 9.4477 28 6 5.9747 -7.1037 8.4493 29 6 2.0783 -0.7967 1.2105 30 1 -0.3634 -1.0272 0.0305 31 1 -0.3634 0.4872 -0.9048 32 1 -0.3632 0.5400 0.8744 33 1 1.3207 -1.4806 -1.5848 34 1 2.3879 -0.1066 -2.0001 35 1 3.1161 -2.6415 -0.7653 36 1 4.1880 -1.2876 -1.2160 37 1 3.2471 -3.1989 1.4125 38 1 4.9194 -2.6265 1.2026 39 1 4.4599 -3.8188 3.6569 40 1 5.0846 -1.7656 5.4929 41 1 3.3571 -2.1606 5.6597 42 1 2.6515 -4.3410 6.4568 43 1 3.2348 -6.3257 7.7898 44 1 6.7903 -3.4008 6.0481 45 1 8.2760 -5.9485 6.7393 46 1 8.1969 -4.9669 8.2271 47 1 6.4346 -9.9157 10.3301 48 1 5.7110 -8.0593 7.9959 49 1 5.6317 -7.0784 9.4835 50 1 2.1445 -0.1593 2.0923 51 1 1.4561 -1.6689 1.4108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717270767.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:41 Heat of formation + Delta-G solvation = 5.066134 kcal Electronic energy + Delta-G solvation = -28757.533398 eV Core-core repulsion = 24849.362353 eV Total energy + Delta-G solvation = -3908.171044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.31363 -40.86021 -39.41459 -37.84520 -35.70384 -34.39992 -34.07247 -32.53183 -31.48099 -30.73592 -29.31857 -28.21977 -27.59849 -26.36757 -25.23091 -23.58807 -22.20600 -22.10909 -21.51168 -21.22418 -21.06090 -19.00367 -18.25165 -17.36062 -17.19734 -16.86328 -16.69313 -16.22038 -16.10002 -16.09011 -15.83779 -15.55707 -15.14968 -14.93099 -14.60843 -14.49554 -14.26944 -13.87447 -13.61512 -13.52115 -13.49694 -13.47752 -13.29918 -13.05435 -13.04201 -12.99494 -12.76062 -12.66554 -12.24415 -12.15806 -11.98866 -11.83135 -11.78923 -11.65223 -11.56687 -11.40885 -10.97048 -10.77796 -10.08236 -9.72929 -9.58700 -9.36671 -8.85572 -7.93983 -5.30990 0.26433 0.44357 1.45688 1.49815 1.56102 1.66181 2.14033 2.44564 2.81936 3.10252 3.28367 3.46040 3.53326 3.64840 3.75237 3.80190 3.93390 3.96785 4.05943 4.13381 4.27667 4.31487 4.35986 4.41182 4.50165 4.54594 4.62523 4.64884 4.73240 4.77131 4.78396 4.83297 4.85184 4.87649 4.96948 5.04256 5.10049 5.17134 5.26092 5.28732 5.30686 5.31419 5.42071 5.42353 5.45812 5.51240 5.56370 5.85766 5.90527 5.96472 6.04010 6.09200 6.59273 6.99792 7.28378 7.64789 8.32610 9.18960 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.029392 B = 0.001650 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.410496 B =16963.781335 C =17188.846620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.124 4.124 5 C 0.033 3.967 6 N -0.523 5.523 7 C 0.029 3.971 8 C 0.511 3.489 9 O -0.565 6.565 10 N -0.717 5.717 11 C 0.178 3.822 12 C -0.107 4.107 13 C -0.088 4.088 14 C -0.111 4.111 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.076 4.076 18 C 0.171 3.829 19 N -0.624 5.624 20 C -0.248 4.248 21 H 0.090 0.910 22 C -0.063 4.063 23 N -0.952 5.952 24 Si 0.988 3.012 25 H -0.275 1.275 26 H -0.292 1.292 27 H -0.274 1.274 28 C 0.221 3.779 29 C 0.041 3.959 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.413 0.587 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.154 0.846 43 H 0.131 0.869 44 H 0.140 0.860 45 H 0.043 0.957 46 H 0.040 0.960 47 H 0.251 0.749 48 H 0.025 0.975 49 H 0.023 0.977 50 H 0.071 0.929 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.104 15.438 -22.089 29.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.162 4.162 5 C -0.094 4.094 6 N -0.248 5.248 7 C -0.102 4.102 8 C 0.298 3.702 9 O -0.443 6.443 10 N -0.370 5.370 11 C 0.055 3.945 12 C -0.108 4.108 13 C -0.106 4.106 14 C -0.129 4.129 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.094 4.094 18 C 0.046 3.954 19 N -0.350 5.350 20 C -0.375 4.375 21 H 0.108 0.892 22 C -0.257 4.257 23 N -0.600 5.600 24 Si 0.815 3.185 25 H -0.201 1.201 26 H -0.218 1.218 27 H -0.199 1.199 28 C 0.096 3.904 29 C -0.087 4.087 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.141 0.859 39 H 0.249 0.751 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.172 0.828 43 H 0.149 0.851 44 H 0.157 0.843 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.043 0.957 49 H 0.041 0.959 50 H 0.090 0.910 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.835 16.478 -21.643 29.665 hybrid contribution 0.340 -2.115 0.915 2.329 sum -11.495 14.363 -20.728 27.715 Atomic orbital electron populations 1.21741 0.93527 1.02110 1.02296 1.22071 0.96212 0.99305 0.94095 0.90952 1.22489 0.96878 0.99135 0.97650 1.22964 0.99577 0.99120 0.87721 1.64541 1.24830 1.32481 1.02903 1.22255 1.04515 0.93742 0.89646 1.20913 0.75797 0.84838 0.88607 1.90680 1.49854 1.21202 1.82592 1.46038 1.71252 1.13560 1.06132 1.19969 1.02329 0.93140 0.79071 1.19639 0.92514 0.97598 1.01043 1.21143 1.00189 0.92997 0.96277 1.20684 0.93820 0.98627 0.99800 1.21191 0.95083 0.97117 0.97838 1.20583 0.95440 0.96473 0.99312 1.20496 0.96768 0.95082 0.97103 1.19804 0.93204 0.88178 0.94169 1.44244 1.02366 1.27238 1.61200 1.19379 0.88363 1.03612 1.26184 0.89187 1.25763 0.98634 1.00008 1.01257 1.70148 1.15296 1.28608 1.45983 0.85017 0.77603 0.77698 0.78180 1.20087 1.21819 1.19938 1.19280 0.83237 0.92386 0.95509 1.23331 0.87992 0.98645 0.98713 0.92375 0.91351 0.92806 0.90238 0.90235 0.92360 0.89767 0.89800 0.85887 0.75109 0.90967 0.90288 0.82825 0.85138 0.84265 0.93918 0.94246 0.93999 0.95691 0.95905 0.91018 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.15 71.98 0.66 -0.82 16 2 C -0.10 -1.33 3.66 -9.59 -0.04 -1.37 16 3 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.12 -1.28 6.51 31.48 0.20 -1.07 16 5 C 0.03 0.39 6.70 86.45 0.58 0.97 16 6 N -0.52 -8.97 5.11 -887.60 -4.54 -13.50 16 7 C 0.03 0.42 5.31 85.55 0.45 0.87 16 8 C 0.51 10.12 7.46 87.66 0.65 10.78 16 9 O -0.56 -15.82 14.30 -3.03 -0.04 -15.86 16 10 N -0.72 -11.99 5.55 -466.79 -2.59 -14.58 16 11 C 0.18 3.44 5.80 85.63 0.50 3.93 16 12 C -0.11 -2.45 5.25 -19.88 -0.10 -2.56 16 13 C -0.09 -2.07 9.70 22.25 0.22 -1.85 16 14 C -0.11 -3.44 10.05 22.30 0.22 -3.22 16 15 C -0.11 -4.44 6.22 -19.83 -0.12 -4.57 16 16 C -0.12 -4.32 6.22 -19.83 -0.12 -4.44 16 17 C -0.08 -2.07 9.70 22.30 0.22 -1.86 16 18 C 0.17 7.35 7.25 85.63 0.62 7.97 16 19 N -0.62 -33.35 3.41 -709.71 -2.42 -35.77 16 20 C -0.25 -14.03 10.32 84.03 0.87 -13.16 16 21 H 0.09 4.80 7.83 -2.91 -0.02 4.77 16 22 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 23 N -0.95 -57.29 10.44 21.65 0.23 -57.06 16 24 Si 0.99 45.33 29.55 68.60 2.03 47.36 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 C 0.22 11.39 5.40 85.63 0.46 11.85 16 29 C 0.04 0.72 5.03 86.65 0.44 1.16 16 30 H 0.06 0.57 8.12 -2.39 -0.02 0.55 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.65 7.85 -2.39 -0.02 0.63 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.53 7.68 -2.39 -0.02 0.51 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.84 7.98 -2.39 -0.02 0.83 16 38 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.41 5.39 8.46 -92.71 -0.78 4.60 16 40 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 41 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 42 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 43 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 45 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.25 14.60 8.31 -92.71 -0.77 13.82 16 48 H 0.03 1.43 7.49 -2.38 -0.02 1.42 16 49 H 0.02 1.32 7.49 -2.39 -0.02 1.31 16 50 H 0.07 1.70 6.43 -2.38 -0.02 1.69 16 51 H 0.04 0.69 7.90 -2.39 -0.02 0.67 16 Total: -1.00 -72.58 405.91 -1.03 -73.61 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.13 Total: 16.33 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 6.17 Total: -0.53 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -9.32 Total: -120.91 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.04 Total: -15.86 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.58 -1.03 -73.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717270767.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.672 kcal (2) G-P(sol) polarization free energy of solvation -72.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds