Wall clock time and date at job start Wed Apr 1 2020 01:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47468 * 2 1 4 4 C 1.53001 * 109.46942 * 119.99601 * 2 1 3 5 5 H 1.09001 * 109.47382 * 184.99685 * 4 2 1 6 6 F 1.39901 * 109.47350 * 304.99948 * 4 2 1 7 7 C 1.50697 * 109.46878 * 65.00037 * 4 2 1 8 8 O 1.21281 * 120.00319 * 314.08924 * 7 4 2 9 9 N 1.34784 * 120.00174 * 134.09277 * 7 4 2 10 10 C 1.46500 * 119.99625 * 3.48801 * 9 7 4 11 11 C 1.46499 * 120.00270 * 183.49257 * 9 7 4 12 12 H 1.09004 * 109.46929 * 359.97438 * 11 9 7 13 13 C 1.53004 * 109.47094 * 119.99785 * 11 9 7 14 14 N 1.46898 * 109.47003 * 304.99864 * 13 11 9 15 15 C 1.46893 * 110.99943 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.47184 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99952 * 0.02562 * 16 15 14 18 18 N 1.34786 * 119.99897 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99593 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00003 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99634 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00273 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47235 * 60.00134 * 23 21 19 25 25 H 1.48509 * 109.47339 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47511 * 299.99955 * 23 21 19 27 27 C 1.52997 * 109.46978 * 239.99741 * 11 9 7 28 28 C 1.53001 * 117.49773 * 248.74390 * 27 11 9 29 29 C 1.52999 * 117.49833 * 180.08371 * 27 11 9 30 30 H 1.08997 * 109.47169 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47008 * 300.00384 * 1 2 3 32 32 H 1.09005 * 109.46666 * 60.00176 * 1 2 3 33 33 H 1.09001 * 109.47008 * 239.99615 * 2 1 3 34 34 H 1.08998 * 109.47328 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46596 * 299.99909 * 3 2 1 36 36 H 1.08988 * 109.46913 * 59.99355 * 3 2 1 37 37 H 1.08996 * 109.47071 * 84.33601 * 10 9 7 38 38 H 1.08999 * 109.47255 * 204.33729 * 10 9 7 39 39 H 1.09006 * 109.47416 * 324.33441 * 10 9 7 40 40 H 1.08992 * 109.47136 * 65.00224 * 13 11 9 41 41 H 1.09002 * 109.46803 * 185.00184 * 13 11 9 42 42 H 1.00901 * 111.00515 * 56.04758 * 14 13 11 43 43 H 1.09001 * 109.47336 * 300.00103 * 15 14 13 44 44 H 1.09001 * 109.47682 * 59.99921 * 15 14 13 45 45 H 0.96995 * 119.99370 * 0.02562 * 18 16 15 46 46 H 0.97008 * 120.00491 * 180.02562 * 22 21 19 47 47 H 1.09002 * 115.55198 * 34.41318 * 27 11 9 48 48 H 1.08999 * 117.50021 * 0.02562 * 28 27 11 49 49 H 1.09003 * 117.49526 * 145.02361 * 28 27 11 50 50 H 1.08996 * 117.50465 * 214.97835 * 29 27 11 51 51 H 1.09005 * 117.49824 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1262 -0.6443 1.2953 6 9 1.4821 -0.1313 2.3887 7 6 1.6412 -2.1732 1.1890 8 8 0.5095 -2.4789 0.8782 9 7 2.5423 -3.1322 1.4805 10 6 3.8867 -2.7619 1.9297 11 6 2.1775 -4.5448 1.3479 12 1 1.1457 -4.6230 1.0052 13 6 3.1047 -5.2181 0.3340 14 7 3.0603 -4.4801 -0.9354 15 6 3.9400 -5.0996 -1.9355 16 6 3.8688 -4.3165 -3.2211 17 8 3.1557 -3.3383 -3.2966 18 7 4.5983 -4.7026 -4.2867 19 6 4.5330 -3.9904 -5.4564 20 1 3.8974 -3.1199 -5.5238 21 6 5.2846 -4.3888 -6.5550 22 7 6.0576 -5.4483 -6.4731 23 14 5.1963 -3.4181 -8.1486 24 1 5.6342 -2.0207 -7.9020 25 1 6.0852 -4.0448 -9.1599 26 1 3.7989 -3.4176 -8.6511 27 6 2.3175 -5.2372 2.7051 28 6 3.4386 -6.2666 2.8608 29 6 1.9816 -6.7282 2.7755 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9563 0.8898 37 1 3.8733 -2.5797 3.0043 38 1 4.5803 -3.5727 1.7073 39 1 4.2067 -1.8576 1.4118 40 1 4.1245 -5.2185 0.7186 41 1 2.7781 -6.2448 0.1689 42 1 3.2967 -3.5089 -0.7976 43 1 4.9658 -5.0996 -1.5669 44 1 3.6190 -6.1254 -2.1163 45 1 5.1688 -5.4846 -4.2261 46 1 6.5826 -5.7262 -7.2400 47 1 2.0726 -4.6246 3.5728 48 1 4.0768 -6.4503 1.9964 49 1 3.9311 -6.3315 3.8311 50 1 1.5162 -7.0967 3.6896 51 1 1.6614 -7.2160 1.8548 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717734463.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:56 Heat of formation + Delta-G solvation = -85.682523 kcal Electronic energy + Delta-G solvation = -31721.742530 eV Core-core repulsion = 27378.867104 eV Total energy + Delta-G solvation = -4342.875426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.00899 -40.43717 -38.50165 -38.06143 -35.69574 -35.22892 -34.73346 -33.79038 -31.25221 -30.09113 -27.81874 -27.32392 -27.08998 -25.93094 -24.35333 -23.12730 -22.45883 -21.35321 -19.92060 -19.38184 -18.91153 -17.94316 -17.89336 -17.15613 -16.49209 -16.30661 -15.90413 -15.68118 -15.42043 -15.02945 -14.57260 -14.36919 -14.17556 -13.99233 -13.86916 -13.54076 -13.35573 -13.21078 -13.04138 -12.90566 -12.72332 -12.63864 -12.33959 -12.12444 -11.98725 -11.91909 -11.75543 -11.56378 -11.43911 -11.34582 -11.17561 -11.02179 -10.90546 -10.71600 -10.64780 -10.45465 -10.23639 -10.22109 -9.51530 -9.41218 -8.92463 -8.44727 -8.07198 -7.97429 -6.43245 -3.84089 2.35524 2.59953 3.18988 3.24826 3.29260 3.56058 3.88441 3.97077 4.09701 4.24908 4.34821 4.37331 4.51836 4.68116 4.72682 4.75516 4.83231 4.92764 4.98498 5.09878 5.16815 5.19831 5.25349 5.27808 5.38480 5.42447 5.43108 5.51504 5.57723 5.63665 5.70738 5.72683 5.82593 5.85270 5.87735 5.91034 5.94130 5.97753 6.07876 6.23420 6.27565 6.31745 6.59352 7.11438 7.15286 7.53529 7.59560 7.97072 8.04383 8.59628 9.16272 9.52345 10.03917 10.74404 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.009363 B = 0.003242 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.635738 B = 8634.740409 C =10980.560815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.113 4.113 3 C -0.147 4.147 4 C 0.082 3.918 5 H 0.101 0.899 6 F -0.191 7.191 7 C 0.501 3.499 8 O -0.502 6.502 9 N -0.603 5.603 10 C 0.068 3.932 11 C 0.173 3.827 12 H 0.116 0.884 13 C 0.047 3.953 14 N -0.663 5.663 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.581 6.581 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.162 4.162 28 C -0.185 4.185 29 C -0.170 4.170 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.084 0.916 42 H 0.347 0.653 43 H 0.041 0.959 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.107 0.893 48 H 0.102 0.898 49 H 0.092 0.908 50 H 0.095 0.905 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.812 2.637 20.660 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.132 4.132 3 C -0.204 4.204 4 C 0.042 3.958 5 H 0.119 0.881 6 F -0.172 7.172 7 C 0.287 3.713 8 O -0.376 6.376 9 N -0.337 5.337 10 C -0.075 4.075 11 C 0.069 3.931 12 H 0.133 0.867 13 C -0.083 4.083 14 N -0.296 5.296 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.465 6.465 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.182 4.182 28 C -0.222 4.222 29 C -0.207 4.207 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.102 0.898 42 H 0.167 0.833 43 H 0.059 0.941 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.125 0.875 48 H 0.121 0.879 49 H 0.111 0.889 50 H 0.113 0.887 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.355 2.752 20.076 20.540 hybrid contribution 1.494 0.138 -0.319 1.534 sum -1.861 2.890 19.757 20.054 Atomic orbital electron populations 1.22080 0.93276 1.05250 1.01290 1.21590 0.98677 0.96795 0.96132 1.21836 1.00914 0.95058 1.02608 1.21793 0.99413 0.89631 0.84920 0.88109 1.92841 1.87646 1.84638 1.52066 1.20881 0.85507 0.87694 0.77222 1.90634 1.19316 1.82440 1.45190 1.47849 1.13182 1.06116 1.66504 1.21930 0.83574 1.01942 1.00019 1.20646 1.01751 0.78608 0.92055 0.86662 1.22467 0.97594 0.98643 0.89628 1.59957 1.56354 1.06509 1.06798 1.21682 0.94553 0.99283 0.92655 1.19785 0.84722 0.87742 0.85224 1.90527 1.42925 1.29163 1.83897 1.41850 1.39803 1.27799 1.10526 1.19650 1.24987 1.10241 0.88044 0.87987 1.25248 0.96157 0.96740 0.99700 1.69601 1.27899 1.24634 1.32228 0.85928 0.78315 0.79398 0.80649 1.19913 1.20964 1.19853 1.22608 1.04851 0.92094 0.98598 1.23200 0.91905 1.03683 1.03417 1.22975 0.98338 0.95822 1.03604 0.88874 0.92898 0.92651 0.88402 0.92468 0.91598 0.92258 0.92021 0.90271 0.90887 0.94710 0.89798 0.83331 0.94068 0.89565 0.77501 0.91818 0.87466 0.87932 0.88925 0.88673 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.70 37.16 0.32 -1.85 16 2 C -0.11 -1.40 2.75 -90.62 -0.25 -1.65 16 3 C -0.15 -1.50 9.11 37.16 0.34 -1.16 16 4 C 0.08 0.95 3.09 -27.88 -0.09 0.86 16 5 H 0.10 0.90 5.49 -51.93 -0.28 0.61 16 6 F -0.19 -2.40 16.03 2.25 0.04 -2.37 16 7 C 0.50 6.83 7.00 -10.98 -0.08 6.75 16 8 O -0.50 -8.54 13.15 5.56 0.07 -8.46 16 9 N -0.60 -6.73 1.83 -173.93 -0.32 -7.04 16 10 C 0.07 0.54 9.45 59.85 0.57 1.10 16 11 C 0.17 1.96 2.73 -67.93 -0.19 1.78 16 12 H 0.12 1.65 6.91 -51.93 -0.36 1.29 16 13 C 0.05 0.55 3.63 -3.82 -0.01 0.53 16 14 N -0.66 -10.66 6.12 -115.06 -0.70 -11.36 16 15 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 16 C 0.44 10.30 7.82 -10.98 -0.09 10.22 16 17 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 18 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 19 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 23 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.16 -1.45 5.48 -90.62 -0.50 -1.94 16 28 C -0.19 -1.38 9.59 -26.69 -0.26 -1.63 16 29 C -0.17 -1.35 9.94 -26.69 -0.27 -1.62 16 30 H 0.09 1.48 5.26 -51.93 -0.27 1.20 16 31 H 0.05 0.68 7.68 -51.93 -0.40 0.28 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.58 7.93 -51.94 -0.41 0.17 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.58 6.54 -51.93 -0.34 0.24 16 39 H 0.07 0.51 5.92 -51.93 -0.31 0.20 16 40 H 0.04 0.35 5.33 -51.93 -0.28 0.08 16 41 H 0.08 0.94 7.44 -51.93 -0.39 0.55 16 42 H 0.35 5.83 7.56 -39.29 -0.30 5.53 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.10 0.77 5.80 -51.93 -0.30 0.47 16 49 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.10 0.81 7.65 -51.93 -0.40 0.41 16 LS Contribution 407.06 15.07 6.13 6.13 Total: -1.00 -32.70 407.06 -7.90 -40.61 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -8.09 Total: 15.70 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.76 Total: 4.30 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.36 Total: -56.23 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.16 Total: -24.09 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.70 -7.90 -40.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717734463.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.077 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds