Wall clock time and date at job start Wed Apr 1 2020 01:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47077 * 2 1 4 4 C 1.53008 * 109.47219 * 119.99575 * 2 1 3 5 5 H 1.09000 * 109.47449 * 185.00145 * 4 2 1 6 6 F 1.39897 * 109.47016 * 305.00168 * 4 2 1 7 7 C 1.50703 * 109.46721 * 64.99914 * 4 2 1 8 8 O 1.21279 * 120.00049 * 315.00256 * 7 4 2 9 9 N 1.34779 * 119.99541 * 135.00260 * 7 4 2 10 10 C 1.46499 * 120.00212 * 359.97438 * 9 7 4 11 11 C 1.46502 * 119.99726 * 179.97438 * 9 7 4 12 12 H 1.09000 * 109.47396 * 0.02562 * 11 9 7 13 13 C 1.52995 * 109.47349 * 239.99897 * 11 9 7 14 14 N 1.46900 * 109.47149 * 54.99896 * 13 11 9 15 15 C 1.46893 * 111.00116 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.46986 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00208 * 0.02562 * 16 15 14 18 18 N 1.34785 * 119.99760 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99737 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99998 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99954 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00036 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99961 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46853 * 60.00143 * 23 21 19 25 25 H 1.48504 * 109.46715 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47198 * 300.00042 * 23 21 19 27 27 C 1.53008 * 109.47134 * 119.99799 * 11 9 7 28 28 C 1.53000 * 117.49970 * 248.74830 * 27 11 9 29 29 C 1.52995 * 117.49836 * 180.08453 * 27 11 9 30 30 H 1.09000 * 109.47379 * 300.00458 * 1 2 3 31 31 H 1.08995 * 109.46973 * 60.00210 * 1 2 3 32 32 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47379 * 239.99542 * 2 1 3 34 34 H 1.08998 * 109.47167 * 60.00036 * 3 2 1 35 35 H 1.09000 * 109.46827 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46536 * 299.99769 * 3 2 1 37 37 H 1.09002 * 109.47391 * 270.00122 * 10 9 7 38 38 H 1.09001 * 109.46813 * 150.00179 * 10 9 7 39 39 H 1.09004 * 109.47041 * 30.00306 * 10 9 7 40 40 H 1.08995 * 109.47154 * 174.99963 * 13 11 9 41 41 H 1.09000 * 109.47200 * 295.00353 * 13 11 9 42 42 H 1.00910 * 110.99885 * 303.95996 * 14 13 11 43 43 H 1.08998 * 109.47171 * 299.99783 * 15 14 13 44 44 H 1.09000 * 109.47109 * 60.00181 * 15 14 13 45 45 H 0.96991 * 119.99701 * 0.02562 * 18 16 15 46 46 H 0.97002 * 120.00296 * 180.02562 * 22 21 19 47 47 H 1.09004 * 115.54734 * 34.41545 * 27 11 9 48 48 H 1.09001 * 117.49768 * 359.97438 * 28 27 11 49 49 H 1.08999 * 117.49814 * 145.01807 * 28 27 11 50 50 H 1.09003 * 117.50096 * 214.97678 * 29 27 11 51 51 H 1.08997 * 117.49801 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 3.1263 -0.6443 1.2953 6 9 1.4822 -0.1314 2.3887 7 6 1.6413 -2.1733 1.1890 8 8 0.5142 -2.4796 0.8623 9 7 2.5373 -3.1314 1.4982 10 6 3.8988 -2.7614 1.8924 11 6 2.1495 -4.5430 1.4402 12 1 1.1076 -4.6212 1.1296 13 6 2.3188 -5.1758 2.8228 14 7 1.5596 -4.4001 3.8126 15 6 1.6996 -4.9793 5.1552 16 6 0.9094 -4.1583 6.1414 17 8 0.2901 -3.1865 5.7630 18 7 0.8900 -4.5045 7.4439 19 6 0.1715 -3.7572 8.3412 20 1 -0.3792 -2.8914 8.0042 21 6 0.1519 -4.1138 9.6840 22 7 0.8224 -5.1670 10.0940 23 14 -0.8276 -3.0960 10.9064 24 1 -2.2600 -3.0953 10.5144 25 1 -0.6865 -3.6821 12.2636 26 1 -0.3154 -1.7022 10.9128 27 6 3.0379 -5.2749 0.4321 28 6 2.3828 -5.7675 -0.8599 29 6 2.7872 -6.7698 0.2242 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 4.5323 -2.7104 1.0068 38 1 4.2942 -3.5097 2.5793 39 1 3.8830 -1.7889 2.3844 40 1 1.9473 -6.2002 2.8015 41 1 3.3744 -5.1776 3.0947 42 1 1.8412 -3.4311 3.8059 43 1 1.3240 -6.0025 5.1505 44 1 2.7509 -4.9794 5.4431 45 1 1.3849 -5.2818 7.7465 46 1 0.8085 -5.4161 11.0314 47 1 4.0682 -4.9242 0.3719 48 1 1.3188 -5.5706 -0.9915 49 1 2.9823 -5.7413 -1.7698 50 1 3.6525 -7.4026 0.0269 51 1 1.9897 -7.2320 0.8060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717734466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:06 Heat of formation + Delta-G solvation = -89.300106 kcal Electronic energy + Delta-G solvation = -31543.086585 eV Core-core repulsion = 27200.054288 eV Total energy + Delta-G solvation = -4343.032296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -47.89728 -40.36075 -38.34918 -37.93635 -35.88311 -35.32989 -34.68931 -33.73916 -31.19620 -30.19893 -27.84400 -27.32003 -27.16274 -26.01246 -24.19808 -22.94920 -22.12768 -21.40804 -20.18293 -19.38024 -19.11457 -18.00781 -17.82618 -17.10039 -16.41109 -16.28009 -15.97050 -15.44935 -15.36819 -14.88202 -14.59089 -14.38830 -14.25566 -13.93303 -13.84645 -13.54194 -13.34395 -13.30073 -13.02207 -12.91928 -12.75008 -12.60033 -12.23848 -12.21825 -12.11311 -11.91299 -11.71706 -11.55406 -11.47303 -11.29749 -11.19398 -11.07762 -10.96528 -10.77227 -10.67647 -10.40733 -10.27738 -10.16805 -9.45811 -9.45042 -8.90544 -8.38296 -8.01065 -7.91264 -6.37705 -3.78174 2.35414 2.60795 3.23694 3.28511 3.33731 3.51597 3.95343 4.01734 4.11730 4.23027 4.27215 4.37892 4.57831 4.62992 4.68830 4.73141 4.78887 5.00446 5.01916 5.04718 5.13144 5.17806 5.19967 5.29014 5.32187 5.38085 5.39911 5.41168 5.52296 5.59688 5.63766 5.70941 5.72848 5.80828 5.84372 5.87207 5.89604 5.98663 6.01808 6.13839 6.29282 6.31462 6.51536 7.11241 7.22688 7.59292 7.67218 7.97508 8.10711 8.66238 9.22470 9.58680 10.11031 10.80146 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.002998 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.898897 B = 9337.865659 C =11424.860221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.108 4.108 3 C -0.149 4.149 4 C 0.081 3.919 5 H 0.098 0.902 6 F -0.180 7.180 7 C 0.501 3.499 8 O -0.501 6.501 9 N -0.602 5.602 10 C 0.065 3.935 11 C 0.173 3.827 12 H 0.112 0.888 13 C 0.053 3.947 14 N -0.664 5.664 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.578 6.578 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.904 5.904 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.165 4.165 28 C -0.174 4.174 29 C -0.170 4.170 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.030 0.970 42 H 0.348 0.652 43 H 0.086 0.914 44 H 0.041 0.959 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.106 0.894 48 H 0.097 0.903 49 H 0.092 0.908 50 H 0.096 0.904 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.285 2.124 -22.654 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.127 4.127 3 C -0.206 4.206 4 C 0.042 3.958 5 H 0.116 0.884 6 F -0.161 7.161 7 C 0.286 3.714 8 O -0.375 6.375 9 N -0.336 5.336 10 C -0.078 4.078 11 C 0.070 3.930 12 H 0.130 0.870 13 C -0.078 4.078 14 N -0.297 5.297 15 C -0.081 4.081 16 C 0.225 3.775 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.185 4.185 28 C -0.211 4.211 29 C -0.208 4.208 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.048 0.952 42 H 0.168 0.832 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.124 0.876 48 H 0.116 0.884 49 H 0.111 0.889 50 H 0.114 0.886 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.650 2.248 -22.966 25.012 hybrid contribution 1.029 0.185 1.302 1.670 sum 10.679 2.433 -21.664 24.275 Atomic orbital electron populations 1.22127 0.93041 1.05490 1.01665 1.21543 0.98827 0.96687 0.95637 1.21860 1.00736 0.95102 1.02928 1.21729 0.99163 0.89748 0.85190 0.88405 1.92934 1.87424 1.84287 1.51459 1.20903 0.85386 0.87679 0.77392 1.90628 1.19230 1.82362 1.45242 1.47818 1.12045 1.06270 1.67471 1.21937 0.82963 1.02246 1.00627 1.20735 1.00109 0.78516 0.93685 0.86999 1.22265 0.95773 0.98478 0.91271 1.59988 1.59067 1.06577 1.04085 1.21676 0.98139 0.99363 0.88952 1.19816 0.86615 0.87816 0.83225 1.90555 1.47469 1.29708 1.78375 1.41844 1.44931 1.27764 1.05648 1.19666 1.25750 1.09719 0.87635 0.87996 1.25243 0.97870 0.96934 0.97878 1.69605 1.42075 1.25658 1.17210 0.85926 0.80019 0.79560 0.78775 1.19868 1.21003 1.19914 1.22546 1.00254 0.96904 0.98754 1.23029 1.01613 1.03760 0.92698 1.22960 1.03702 0.91341 1.02793 0.92178 0.92933 0.88761 0.89707 0.91717 0.92561 0.91815 0.92071 0.90368 0.90602 0.89771 0.95198 0.83159 0.89573 0.94087 0.77528 0.91887 0.87584 0.88442 0.88923 0.88602 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 8.71 37.16 0.32 -1.68 16 2 C -0.11 -1.08 2.75 -90.61 -0.25 -1.33 16 3 C -0.15 -1.21 9.11 37.16 0.34 -0.87 16 4 C 0.08 0.93 2.85 -27.88 -0.08 0.85 16 5 H 0.10 0.79 5.86 -51.93 -0.30 0.49 16 6 F -0.18 -2.75 16.03 2.25 0.04 -2.72 16 7 C 0.50 6.81 7.02 -10.98 -0.08 6.73 16 8 O -0.50 -8.51 13.12 5.56 0.07 -8.44 16 9 N -0.60 -6.74 1.83 -173.93 -0.32 -7.05 16 10 C 0.07 0.51 8.85 59.85 0.53 1.04 16 11 C 0.17 1.98 2.57 -67.93 -0.17 1.80 16 12 H 0.11 1.60 6.66 -51.93 -0.35 1.26 16 13 C 0.05 0.65 4.75 -3.83 -0.02 0.63 16 14 N -0.66 -11.47 6.12 -115.07 -0.70 -12.17 16 15 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 16 C 0.44 10.85 7.82 -10.98 -0.09 10.76 16 17 O -0.58 -16.59 15.78 5.55 0.09 -16.50 16 18 N -0.56 -14.74 5.29 -10.96 -0.06 -14.80 16 19 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 20 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 23 Si 0.93 21.58 29.55 -169.99 -5.02 16.55 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.16 -1.40 5.21 -90.62 -0.47 -1.88 16 28 C -0.17 -1.42 10.18 -26.69 -0.27 -1.70 16 29 C -0.17 -1.31 9.80 -26.69 -0.26 -1.57 16 30 H 0.06 0.80 7.69 -51.93 -0.40 0.40 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.36 5.25 -51.93 -0.27 1.09 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.60 7.93 -51.93 -0.41 0.18 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.33 8.07 -51.93 -0.42 -0.09 16 38 H 0.08 0.59 6.53 -51.93 -0.34 0.25 16 39 H 0.08 0.57 6.23 -51.93 -0.32 0.24 16 40 H 0.08 0.99 7.47 -51.93 -0.39 0.60 16 41 H 0.03 0.33 6.88 -51.93 -0.36 -0.03 16 42 H 0.35 6.46 7.56 -39.29 -0.30 6.16 16 43 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.11 0.79 7.43 -51.93 -0.39 0.40 16 48 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 49 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.10 0.80 7.66 -51.93 -0.40 0.40 16 LS Contribution 410.81 15.07 6.19 6.19 Total: -1.00 -34.74 410.81 -8.04 -42.77 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -8.27 Total: 14.94 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -0.77 Total: 5.51 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.36 Total: -58.30 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: 0.16 Total: -24.94 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.74 -8.04 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717734466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.525 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds