Wall clock time and date at job start Wed Apr 1 2020 01:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47077 * 2 1 4 4 C 1.53008 * 109.47219 * 119.99575 * 2 1 3 5 5 H 1.09000 * 109.47449 * 185.00145 * 4 2 1 6 6 F 1.39897 * 109.47016 * 305.00168 * 4 2 1 7 7 C 1.50703 * 109.46721 * 64.99914 * 4 2 1 8 8 O 1.21279 * 120.00049 * 315.00256 * 7 4 2 9 9 N 1.34779 * 119.99541 * 135.00260 * 7 4 2 10 10 C 1.46499 * 120.00212 * 359.97438 * 9 7 4 11 11 C 1.46502 * 119.99726 * 179.97438 * 9 7 4 12 12 H 1.09000 * 109.47396 * 0.02562 * 11 9 7 13 13 C 1.52995 * 109.47349 * 239.99897 * 11 9 7 14 14 N 1.46900 * 109.47149 * 54.99896 * 13 11 9 15 15 C 1.46893 * 111.00116 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.46986 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00208 * 0.02562 * 16 15 14 18 18 N 1.34785 * 119.99760 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99737 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99998 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99954 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00036 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99961 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46853 * 60.00143 * 23 21 19 25 25 H 1.48504 * 109.46715 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47198 * 300.00042 * 23 21 19 27 27 C 1.53008 * 109.47134 * 119.99799 * 11 9 7 28 28 C 1.53000 * 117.49970 * 248.74830 * 27 11 9 29 29 C 1.52995 * 117.49836 * 180.08453 * 27 11 9 30 30 H 1.09000 * 109.47379 * 300.00458 * 1 2 3 31 31 H 1.08995 * 109.46973 * 60.00210 * 1 2 3 32 32 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47379 * 239.99542 * 2 1 3 34 34 H 1.08998 * 109.47167 * 60.00036 * 3 2 1 35 35 H 1.09000 * 109.46827 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46536 * 299.99769 * 3 2 1 37 37 H 1.09002 * 109.47391 * 270.00122 * 10 9 7 38 38 H 1.09001 * 109.46813 * 150.00179 * 10 9 7 39 39 H 1.09004 * 109.47041 * 30.00306 * 10 9 7 40 40 H 1.08995 * 109.47154 * 174.99963 * 13 11 9 41 41 H 1.09000 * 109.47200 * 295.00353 * 13 11 9 42 42 H 1.00910 * 110.99885 * 303.95996 * 14 13 11 43 43 H 1.08998 * 109.47171 * 299.99783 * 15 14 13 44 44 H 1.09000 * 109.47109 * 60.00181 * 15 14 13 45 45 H 0.96991 * 119.99701 * 0.02562 * 18 16 15 46 46 H 0.97002 * 120.00296 * 180.02562 * 22 21 19 47 47 H 1.09004 * 115.54734 * 34.41545 * 27 11 9 48 48 H 1.09001 * 117.49768 * 359.97438 * 28 27 11 49 49 H 1.08999 * 117.49814 * 145.01807 * 28 27 11 50 50 H 1.09003 * 117.50096 * 214.97678 * 29 27 11 51 51 H 1.08997 * 117.49801 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 3.1263 -0.6443 1.2953 6 9 1.4822 -0.1314 2.3887 7 6 1.6413 -2.1733 1.1890 8 8 0.5142 -2.4796 0.8623 9 7 2.5373 -3.1314 1.4982 10 6 3.8988 -2.7614 1.8924 11 6 2.1495 -4.5430 1.4402 12 1 1.1076 -4.6212 1.1296 13 6 2.3188 -5.1758 2.8228 14 7 1.5596 -4.4001 3.8126 15 6 1.6996 -4.9793 5.1552 16 6 0.9094 -4.1583 6.1414 17 8 0.2901 -3.1865 5.7630 18 7 0.8900 -4.5045 7.4439 19 6 0.1715 -3.7572 8.3412 20 1 -0.3792 -2.8914 8.0042 21 6 0.1519 -4.1138 9.6840 22 7 0.8224 -5.1670 10.0940 23 14 -0.8276 -3.0960 10.9064 24 1 -2.2600 -3.0953 10.5144 25 1 -0.6865 -3.6821 12.2636 26 1 -0.3154 -1.7022 10.9128 27 6 3.0379 -5.2749 0.4321 28 6 2.3828 -5.7675 -0.8599 29 6 2.7872 -6.7698 0.2242 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 4.5323 -2.7104 1.0068 38 1 4.2942 -3.5097 2.5793 39 1 3.8830 -1.7889 2.3844 40 1 1.9473 -6.2002 2.8015 41 1 3.3744 -5.1776 3.0947 42 1 1.8412 -3.4311 3.8059 43 1 1.3240 -6.0025 5.1505 44 1 2.7509 -4.9794 5.4431 45 1 1.3849 -5.2818 7.7465 46 1 0.8085 -5.4161 11.0314 47 1 4.0682 -4.9242 0.3719 48 1 1.3188 -5.5706 -0.9915 49 1 2.9823 -5.7413 -1.7698 50 1 3.6525 -7.4026 0.0269 51 1 1.9897 -7.2320 0.8060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717734466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:05 Heat of formation + Delta-G solvation = -113.211756 kcal Electronic energy + Delta-G solvation = -31544.123472 eV Core-core repulsion = 27200.054288 eV Total energy + Delta-G solvation = -4344.069183 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -48.96343 -41.31498 -40.15503 -38.95671 -36.83647 -36.23377 -36.08549 -35.57701 -33.29639 -31.27856 -28.89816 -28.21692 -28.05503 -27.35333 -25.85848 -23.89482 -22.92854 -22.20769 -21.26713 -20.88699 -20.19454 -19.91810 -18.91168 -18.07498 -17.84566 -17.31361 -17.10065 -16.83122 -16.50628 -16.29483 -15.84678 -15.78211 -15.47063 -15.22031 -15.01732 -14.75986 -14.47838 -14.32486 -14.14654 -13.87474 -13.81079 -13.56036 -13.44728 -13.34009 -13.19457 -13.05875 -12.99537 -12.90925 -12.77364 -12.46228 -12.38684 -12.14670 -12.12622 -12.07207 -11.91144 -11.60101 -11.53456 -11.31917 -10.99438 -10.46153 -10.39699 -10.04125 -9.75224 -9.31237 -8.48910 -5.97788 1.34431 1.37645 1.39420 1.50556 1.75791 2.02455 2.27269 2.73697 2.99142 3.17928 3.22627 3.41637 3.44120 3.59814 3.77779 3.81468 3.93421 4.07693 4.11769 4.14475 4.23375 4.25244 4.33728 4.40127 4.42600 4.47668 4.53849 4.55350 4.61471 4.69668 4.76409 4.80166 4.84928 4.89753 4.95926 5.00442 5.06510 5.08742 5.23317 5.29592 5.36193 5.38234 5.42331 5.56474 5.85198 6.07442 6.19992 6.31484 6.58240 7.01336 7.10458 7.53193 8.10005 8.68279 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.002998 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.898897 B = 9337.865659 C =11424.860221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.144 4.144 4 C 0.075 3.925 5 H 0.139 0.861 6 F -0.207 7.207 7 C 0.489 3.511 8 O -0.549 6.549 9 N -0.597 5.597 10 C 0.055 3.945 11 C 0.175 3.825 12 H 0.074 0.926 13 C 0.055 3.945 14 N -0.687 5.687 15 C 0.067 3.933 16 C 0.434 3.566 17 O -0.626 6.626 18 N -0.570 5.570 19 C -0.337 4.337 20 H 0.074 0.926 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.274 1.274 25 H -0.266 1.266 26 H -0.271 1.271 27 C -0.160 4.160 28 C -0.179 4.179 29 C -0.162 4.162 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.338 0.662 43 H 0.105 0.895 44 H 0.072 0.928 45 H 0.397 0.603 46 H 0.279 0.721 47 H 0.129 0.871 48 H 0.076 0.924 49 H 0.110 0.890 50 H 0.117 0.883 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.248 1.528 -23.311 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.123 4.123 3 C -0.202 4.202 4 C 0.036 3.964 5 H 0.156 0.844 6 F -0.188 7.188 7 C 0.275 3.725 8 O -0.427 6.427 9 N -0.330 5.330 10 C -0.086 4.086 11 C 0.072 3.928 12 H 0.092 0.908 13 C -0.074 4.074 14 N -0.320 5.320 15 C -0.065 4.065 16 C 0.221 3.779 17 O -0.512 6.512 18 N -0.208 5.208 19 C -0.467 4.467 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.191 1.191 26 H -0.197 1.197 27 C -0.180 4.180 28 C -0.216 4.216 29 C -0.199 4.199 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.076 0.924 42 H 0.157 0.843 43 H 0.123 0.877 44 H 0.090 0.910 45 H 0.231 0.769 46 H 0.088 0.912 47 H 0.147 0.853 48 H 0.095 0.905 49 H 0.128 0.872 50 H 0.135 0.865 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.675 1.605 -23.617 26.851 hybrid contribution 0.099 0.317 1.475 1.512 sum 12.774 1.922 -22.142 25.634 Atomic orbital electron populations 1.22068 0.95235 1.03548 1.01411 1.21580 0.96986 0.98144 0.95640 1.21841 1.02189 0.93357 1.02769 1.22094 1.01255 0.88325 0.84719 0.84380 1.92875 1.88117 1.84641 1.53156 1.21396 0.85117 0.88956 0.76992 1.90616 1.21250 1.83207 1.47605 1.47932 1.13081 1.05792 1.66170 1.22252 0.81285 1.02603 1.02487 1.20609 0.99010 0.79211 0.94009 0.90827 1.22368 0.96688 0.98080 0.90242 1.59964 1.61186 1.06547 1.04323 1.21536 0.98530 0.98582 0.87862 1.20958 0.85910 0.87485 0.83522 1.90525 1.49477 1.32033 1.79180 1.41891 1.44979 1.27789 1.06129 1.19607 1.27636 1.10287 0.89125 0.90750 1.26008 0.98321 0.97847 0.98801 1.69655 1.42115 1.26117 1.18020 0.85022 0.78301 0.78173 0.77034 1.19982 1.19068 1.19653 1.22455 1.00448 0.97226 0.97833 1.23039 1.00789 1.04287 0.93491 1.23035 1.04084 0.90970 1.01823 0.94432 0.91079 0.91518 0.87840 0.93344 0.90184 0.90518 0.88572 0.89591 0.90361 0.88998 0.92393 0.84296 0.87674 0.91046 0.76860 0.91175 0.85310 0.90506 0.87211 0.86481 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.71 71.98 0.63 -3.59 16 2 C -0.10 -2.02 2.75 -10.79 -0.03 -2.05 16 3 C -0.14 -2.10 9.11 71.98 0.66 -1.45 16 4 C 0.07 1.69 2.85 29.85 0.09 1.78 16 5 H 0.14 1.91 5.86 -2.39 -0.01 1.90 16 6 F -0.21 -6.59 16.03 44.97 0.72 -5.87 16 7 C 0.49 13.59 7.02 87.66 0.61 14.20 16 8 O -0.55 -20.08 13.12 -3.02 -0.04 -20.11 16 9 N -0.60 -12.80 1.83 -822.57 -1.51 -14.30 16 10 C 0.06 0.69 8.85 127.77 1.13 1.82 16 11 C 0.18 3.89 2.57 44.99 0.12 4.01 16 12 H 0.07 2.23 6.66 -2.39 -0.02 2.22 16 13 C 0.06 1.28 4.75 86.30 0.41 1.69 16 14 N -0.69 -23.59 6.12 -517.96 -3.17 -26.76 16 15 C 0.07 2.40 6.17 85.56 0.53 2.92 16 16 C 0.43 21.82 7.82 87.66 0.69 22.50 16 17 O -0.63 -37.49 15.78 -3.04 -0.05 -37.54 16 18 N -0.57 -30.32 5.29 -306.97 -1.62 -31.95 16 19 C -0.34 -19.87 9.68 84.04 0.81 -19.05 16 20 H 0.07 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 22 N -0.92 -50.23 13.05 21.66 0.28 -49.95 16 23 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 C -0.16 -2.35 5.21 -10.79 -0.06 -2.41 16 28 C -0.18 -2.68 10.18 30.62 0.31 -2.37 16 29 C -0.16 -2.10 9.80 30.62 0.30 -1.80 16 30 H 0.04 1.08 7.69 -2.39 -0.02 1.06 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 2.11 5.25 -2.39 -0.01 2.09 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 0.87 7.93 -2.39 -0.02 0.85 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 0.59 8.07 -2.39 -0.02 0.57 16 38 H 0.09 0.98 6.53 -2.39 -0.02 0.97 16 39 H 0.08 0.97 6.23 -2.38 -0.01 0.96 16 40 H 0.09 1.98 7.47 -2.39 -0.02 1.97 16 41 H 0.06 1.05 6.88 -2.39 -0.02 1.03 16 42 H 0.34 12.69 7.56 -89.69 -0.68 12.01 16 43 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 44 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 46 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 47 H 0.13 1.35 7.43 -2.39 -0.02 1.33 16 48 H 0.08 1.47 8.05 -2.39 -0.02 1.45 16 49 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.09 1.34 7.66 -2.39 -0.02 1.33 16 Total: -1.00 -80.64 410.81 2.85 -77.79 By element: Atomic # 1 Polarization: 46.85 SS G_CDS: -0.45 Total: 46.40 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 6.66 Total: 16.14 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -6.02 Total: -122.96 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -0.09 Total: -57.65 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.72 Total: -5.87 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -80.64 2.85 -77.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717734466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.421 kcal (2) G-P(sol) polarization free energy of solvation -80.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds