Wall clock time and date at job start Wed Apr 1 2020 02:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46890 * 2 1 4 4 N 1.46494 * 109.47309 * 119.99973 * 2 1 3 5 5 C 1.46503 * 120.00228 * 298.91089 * 4 2 1 6 6 C 1.52998 * 109.47081 * 89.99863 * 5 4 2 7 7 N 1.46494 * 109.47125 * 180.02562 * 6 5 4 8 8 C 1.46502 * 120.00314 * 270.00161 * 7 6 5 9 9 C 1.36943 * 119.99828 * 90.00076 * 7 6 5 10 10 H 1.07998 * 120.00081 * 24.10300 * 9 7 6 11 11 C 1.38809 * 119.99804 * 204.10090 * 9 7 6 12 12 N 1.31619 * 120.00314 * 9.52119 * 11 9 7 13 13 Si 1.86804 * 119.99978 * 189.52564 * 11 9 7 14 14 H 1.48506 * 109.46980 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47523 * 119.99926 * 13 11 9 16 16 H 1.48496 * 109.46951 * 240.00097 * 13 11 9 17 17 C 1.34776 * 120.00229 * 118.91422 * 4 2 1 18 18 O 1.21593 * 120.00412 * 183.79514 * 17 4 2 19 19 C 1.47587 * 119.99810 * 3.79223 * 17 4 2 20 20 C 1.40240 * 119.83073 * 135.87096 * 19 17 4 21 21 C 1.36198 * 120.37504 * 179.73887 * 20 19 17 22 22 C 1.39913 * 119.96094 * 0.50801 * 21 20 19 23 23 C 1.46257 * 133.83754 * 179.76293 * 22 21 20 24 24 C 1.34459 * 107.03301 * 180.02562 * 23 22 21 25 25 N 1.36562 * 109.97660 * 359.97438 * 24 23 22 26 26 C 1.46503 * 125.07199 * 179.97438 * 25 24 23 27 27 C 1.37822 * 109.86091 * 0.02562 * 25 24 23 28 28 C 1.38690 * 133.37822 * 180.02562 * 27 25 24 29 29 H 1.08994 * 109.47518 * 60.00280 * 1 2 3 30 30 H 1.09003 * 109.46752 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47093 * 299.99645 * 1 2 3 32 32 H 1.09007 * 109.47038 * 240.00133 * 2 1 3 33 33 H 1.08998 * 109.47258 * 59.99917 * 3 2 1 34 34 H 1.09005 * 109.47107 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46988 * 299.99525 * 3 2 1 36 36 H 1.08996 * 109.47508 * 210.00316 * 5 4 2 37 37 H 1.09006 * 109.46561 * 330.00222 * 5 4 2 38 38 H 1.08996 * 109.47320 * 300.00568 * 6 5 4 39 39 H 1.09006 * 109.47010 * 60.00166 * 6 5 4 40 40 H 1.08993 * 109.46981 * 95.06641 * 8 7 6 41 41 H 1.08996 * 109.47095 * 215.07085 * 8 7 6 42 42 H 1.09004 * 109.47011 * 335.06903 * 8 7 6 43 43 H 0.97006 * 119.99932 * 179.97438 * 12 11 9 44 44 H 1.08002 * 119.80954 * 359.97438 * 20 19 17 45 45 H 1.08002 * 120.01579 * 180.27556 * 21 20 19 46 46 H 1.07988 * 126.48235 * 0.02562 * 23 22 21 47 47 H 1.07993 * 125.01587 * 180.02562 * 24 23 22 48 48 H 1.09001 * 109.47028 * 270.02655 * 26 25 24 49 49 H 1.08998 * 109.46963 * 30.02075 * 26 25 24 50 50 H 1.08999 * 109.47212 * 150.02501 * 26 25 24 51 51 H 1.08001 * 120.16189 * 359.94746 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6843 -0.1763 2.5266 6 6 0.3775 -0.8117 3.0056 7 7 0.0431 -0.2970 4.3358 8 6 0.5313 -0.9871 5.5323 9 6 -0.7259 0.8292 4.4608 10 1 -1.3961 1.1166 3.6642 11 6 -0.6440 1.6013 5.6114 12 7 0.2994 1.3634 6.4979 13 14 -1.8728 2.9780 5.9018 14 1 -2.8251 3.0397 4.7640 15 1 -2.6191 2.7185 7.1591 16 1 -1.1506 4.2708 6.0128 17 6 2.7750 -1.7990 1.0726 18 8 3.1227 -2.4114 2.0638 19 6 3.1816 -2.2695 -0.2659 20 6 4.5020 -2.6871 -0.4872 21 6 4.8878 -3.1284 -1.7166 22 6 3.9669 -3.1566 -2.7696 23 6 4.0465 -3.5552 -4.1745 24 6 2.8278 -3.3614 -4.7086 25 7 1.9754 -2.8723 -3.7604 26 6 0.5658 -2.5425 -3.9854 27 6 2.6392 -2.7339 -2.5606 28 6 2.2535 -2.2914 -1.3040 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 2.4852 -0.4234 3.2234 37 1 1.5657 0.9062 2.4784 38 1 -0.4235 -0.5646 2.3089 39 1 0.4960 -1.8942 3.0537 40 1 1.4557 -0.5187 5.8701 41 1 -0.2184 -0.9217 6.3208 42 1 0.7199 -2.0344 5.2962 43 1 0.3568 1.9033 7.3018 44 1 5.2159 -2.6622 0.3228 45 1 5.9050 -3.4528 -1.8795 46 1 4.9190 -3.9335 -4.6862 47 1 2.5620 -3.5637 -5.7355 48 1 0.4815 -1.5017 -4.2980 49 1 0.1611 -3.1895 -4.7637 50 1 0.0060 -2.6910 -3.0620 51 1 1.2385 -1.9648 -1.1317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717952384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:32 Heat of formation + Delta-G solvation = 71.204618 kcal Electronic energy + Delta-G solvation = -30840.238652 eV Core-core repulsion = 26934.935587 eV Total energy + Delta-G solvation = -3905.303064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.61381 -39.95185 -37.03751 -36.51038 -35.35286 -33.19894 -31.93385 -31.03422 -30.66751 -29.63242 -27.87414 -27.16698 -26.50699 -25.76986 -24.02631 -23.23584 -22.11058 -21.33195 -20.79359 -20.26696 -18.72688 -17.57389 -17.22328 -16.59573 -16.22459 -15.73664 -15.55710 -15.02350 -14.95033 -14.57007 -14.32367 -13.94968 -13.81535 -13.59885 -13.33928 -13.26497 -13.18673 -13.00152 -12.86596 -12.69374 -12.48049 -12.20269 -12.05533 -11.96907 -11.69768 -11.47426 -11.39905 -11.19504 -11.06035 -10.85687 -10.76665 -10.63945 -10.45435 -10.00648 -9.89909 -9.82349 -9.61860 -9.45145 -8.58965 -8.42361 -8.27522 -7.81775 -6.67552 -5.68455 -3.16661 0.73030 1.39735 2.37546 2.50264 3.04798 3.28371 3.38346 3.44766 3.46598 3.79462 4.38376 4.38992 4.52019 4.53120 4.66206 4.80562 4.88902 4.90851 5.09328 5.15225 5.17680 5.23426 5.32923 5.39677 5.46687 5.48246 5.67124 5.68896 5.71076 5.76235 5.82445 5.88633 5.93609 5.96852 6.22211 6.23337 6.29504 6.37219 6.42716 6.50553 6.52463 6.53900 6.69222 6.88354 6.92117 6.96367 7.00020 7.13599 7.47535 7.78004 7.80630 7.87668 8.43390 8.50605 9.27651 9.90980 10.42017 11.35589 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.002724 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.962054 B =10277.281321 C =11040.257635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 C -0.163 4.163 4 N -0.593 5.593 5 C 0.094 3.906 6 C 0.140 3.860 7 N -0.599 5.599 8 C 0.163 3.837 9 C -0.254 4.254 10 H 0.067 0.933 11 C 0.002 3.998 12 N -0.905 5.905 13 Si 0.903 3.097 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.553 3.447 18 O -0.531 6.531 19 C -0.097 4.097 20 C -0.097 4.097 21 C -0.077 4.077 22 C -0.094 4.094 23 C -0.209 4.209 24 C 0.055 3.945 25 N -0.486 5.486 26 C 0.075 3.925 27 C 0.086 3.914 28 C -0.101 4.101 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.038 0.962 40 H 0.030 0.970 41 H 0.041 0.959 42 H -0.002 1.002 43 H 0.252 0.748 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.147 0.853 47 H 0.168 0.832 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -7.104 -25.856 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.003 3.997 3 C -0.221 4.221 4 N -0.325 5.325 5 C -0.030 4.030 6 C 0.011 3.989 7 N -0.322 5.322 8 C 0.019 3.981 9 C -0.384 4.384 10 H 0.085 0.915 11 C -0.196 4.196 12 N -0.550 5.550 13 Si 0.733 3.267 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.217 1.217 17 C 0.340 3.660 18 O -0.409 6.409 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.096 4.096 22 C -0.099 4.099 23 C -0.234 4.234 24 C -0.071 4.071 25 N -0.169 5.169 26 C -0.066 4.066 27 C -0.019 4.019 28 C -0.121 4.121 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.017 0.983 43 H 0.062 0.938 44 H 0.149 0.851 45 H 0.145 0.855 46 H 0.165 0.835 47 H 0.185 0.815 48 H 0.090 0.910 49 H 0.102 0.898 50 H 0.101 0.899 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.406 -7.259 -25.188 26.581 hybrid contribution -0.685 0.967 0.164 1.197 sum 3.721 -6.292 -25.024 26.070 Atomic orbital electron populations 1.22336 0.94817 1.02285 1.03263 1.21736 0.94757 0.94048 0.89189 1.22156 1.01416 0.95864 1.02706 1.48204 1.50189 1.26257 1.07893 1.22592 1.00463 0.99425 0.80542 1.21300 0.93478 0.96039 0.88044 1.43944 1.59246 1.29440 0.99529 1.20815 0.98947 0.90091 0.88271 1.19222 1.15120 1.00817 1.03204 0.91513 1.25095 0.97800 0.98111 0.98627 1.70080 1.32488 1.41085 1.11370 0.86206 0.80666 0.81997 0.77796 1.20376 1.21649 1.21741 1.18253 0.78482 0.80937 0.88321 1.90812 1.55760 1.55495 1.38787 1.19677 0.94804 1.02662 0.93038 1.20620 0.94778 0.99046 0.97252 1.20179 0.98780 0.99434 0.91206 1.19348 0.92806 1.03240 0.94465 1.21689 0.97774 1.10976 0.92955 1.21824 0.89940 1.00872 0.94474 1.43787 1.09854 1.55600 1.07691 1.21991 0.78996 1.01934 1.03693 1.18060 0.92330 1.04135 0.87363 1.20276 1.00180 1.02177 0.89514 0.91954 0.92503 0.90281 0.87796 0.91338 0.92467 0.91882 0.90665 0.90335 0.93366 0.94371 0.95126 0.93989 0.98303 0.93789 0.85136 0.85484 0.83528 0.81476 0.91044 0.89830 0.89918 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 7.80 37.16 0.29 -1.74 16 2 C 0.11 1.36 2.42 -67.94 -0.16 1.20 16 3 C -0.16 -2.01 9.15 37.16 0.34 -1.67 16 4 N -0.59 -9.78 2.40 -167.31 -0.40 -10.19 16 5 C 0.09 1.88 5.15 -4.04 -0.02 1.86 16 6 C 0.14 3.04 5.76 -4.05 -0.02 3.01 16 7 N -0.60 -15.58 2.92 -181.13 -0.53 -16.10 16 8 C 0.16 4.31 9.01 59.85 0.54 4.84 16 9 C -0.25 -6.97 9.66 -15.06 -0.15 -7.11 16 10 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 11 C 0.00 0.06 5.17 -17.43 -0.09 -0.03 16 12 N -0.91 -26.72 10.59 55.49 0.59 -26.14 16 13 Si 0.90 21.81 29.56 -169.99 -5.03 16.79 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 17 C 0.55 9.72 7.27 -12.45 -0.09 9.63 16 18 O -0.53 -11.45 16.58 5.28 0.09 -11.36 16 19 C -0.10 -1.40 5.28 -104.95 -0.55 -1.96 16 20 C -0.10 -1.28 9.59 -39.56 -0.38 -1.66 16 21 C -0.08 -0.88 10.03 -39.69 -0.40 -1.27 16 22 C -0.09 -1.07 6.37 -105.04 -0.67 -1.74 16 23 C -0.21 -1.84 11.08 -37.70 -0.42 -2.26 16 24 C 0.05 0.41 11.28 -16.78 -0.19 0.22 16 25 N -0.49 -4.19 3.18 -121.84 -0.39 -4.58 16 26 C 0.08 0.40 11.02 59.85 0.66 1.06 16 27 C 0.09 0.98 6.80 -84.00 -0.57 0.41 16 28 C -0.10 -1.23 7.19 -39.03 -0.28 -1.51 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 31 H 0.08 1.15 6.13 -51.93 -0.32 0.84 16 32 H 0.10 1.21 3.67 -51.93 -0.19 1.02 16 33 H 0.07 0.96 6.63 -51.93 -0.34 0.62 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.73 7.48 -51.93 -0.39 1.34 16 37 H 0.08 1.62 6.37 -51.93 -0.33 1.29 16 38 H 0.05 0.98 5.33 -51.93 -0.28 0.70 16 39 H 0.04 0.85 7.86 -51.93 -0.41 0.45 16 40 H 0.03 0.86 7.33 -51.93 -0.38 0.48 16 41 H 0.04 1.16 7.32 -51.93 -0.38 0.78 16 42 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 46 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 48 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.08 0.26 8.13 -51.93 -0.42 -0.16 16 50 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 51 H 0.13 1.47 5.47 -52.49 -0.29 1.18 16 LS Contribution 402.80 15.07 6.07 6.07 Total: -1.00 -34.17 402.80 -9.64 -43.81 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.88 Total: 0.42 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.16 Total: 1.27 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.73 Total: -57.01 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.17 -9.64 -43.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717952384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.020 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds