Wall clock time and date at job start Wed Apr 1 2020 02:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46890 * 2 1 4 4 N 1.46494 * 109.47309 * 119.99973 * 2 1 3 5 5 C 1.46503 * 120.00228 * 298.91089 * 4 2 1 6 6 C 1.52998 * 109.47081 * 89.99863 * 5 4 2 7 7 N 1.46494 * 109.47125 * 180.02562 * 6 5 4 8 8 C 1.46502 * 120.00314 * 270.00161 * 7 6 5 9 9 C 1.36943 * 119.99828 * 90.00076 * 7 6 5 10 10 H 1.07998 * 120.00081 * 24.10300 * 9 7 6 11 11 C 1.38809 * 119.99804 * 204.10090 * 9 7 6 12 12 N 1.31619 * 120.00314 * 9.52119 * 11 9 7 13 13 Si 1.86804 * 119.99978 * 189.52564 * 11 9 7 14 14 H 1.48506 * 109.46980 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47523 * 119.99926 * 13 11 9 16 16 H 1.48496 * 109.46951 * 240.00097 * 13 11 9 17 17 C 1.34776 * 120.00229 * 118.91422 * 4 2 1 18 18 O 1.21593 * 120.00412 * 183.79514 * 17 4 2 19 19 C 1.47587 * 119.99810 * 3.79223 * 17 4 2 20 20 C 1.40240 * 119.83073 * 135.87096 * 19 17 4 21 21 C 1.36198 * 120.37504 * 179.73887 * 20 19 17 22 22 C 1.39913 * 119.96094 * 0.50801 * 21 20 19 23 23 C 1.46257 * 133.83754 * 179.76293 * 22 21 20 24 24 C 1.34459 * 107.03301 * 180.02562 * 23 22 21 25 25 N 1.36562 * 109.97660 * 359.97438 * 24 23 22 26 26 C 1.46503 * 125.07199 * 179.97438 * 25 24 23 27 27 C 1.37822 * 109.86091 * 0.02562 * 25 24 23 28 28 C 1.38690 * 133.37822 * 180.02562 * 27 25 24 29 29 H 1.08994 * 109.47518 * 60.00280 * 1 2 3 30 30 H 1.09003 * 109.46752 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47093 * 299.99645 * 1 2 3 32 32 H 1.09007 * 109.47038 * 240.00133 * 2 1 3 33 33 H 1.08998 * 109.47258 * 59.99917 * 3 2 1 34 34 H 1.09005 * 109.47107 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46988 * 299.99525 * 3 2 1 36 36 H 1.08996 * 109.47508 * 210.00316 * 5 4 2 37 37 H 1.09006 * 109.46561 * 330.00222 * 5 4 2 38 38 H 1.08996 * 109.47320 * 300.00568 * 6 5 4 39 39 H 1.09006 * 109.47010 * 60.00166 * 6 5 4 40 40 H 1.08993 * 109.46981 * 95.06641 * 8 7 6 41 41 H 1.08996 * 109.47095 * 215.07085 * 8 7 6 42 42 H 1.09004 * 109.47011 * 335.06903 * 8 7 6 43 43 H 0.97006 * 119.99932 * 179.97438 * 12 11 9 44 44 H 1.08002 * 119.80954 * 359.97438 * 20 19 17 45 45 H 1.08002 * 120.01579 * 180.27556 * 21 20 19 46 46 H 1.07988 * 126.48235 * 0.02562 * 23 22 21 47 47 H 1.07993 * 125.01587 * 180.02562 * 24 23 22 48 48 H 1.09001 * 109.47028 * 270.02655 * 26 25 24 49 49 H 1.08998 * 109.46963 * 30.02075 * 26 25 24 50 50 H 1.08999 * 109.47212 * 150.02501 * 26 25 24 51 51 H 1.08001 * 120.16189 * 359.94746 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6843 -0.1763 2.5266 6 6 0.3775 -0.8117 3.0056 7 7 0.0431 -0.2970 4.3358 8 6 0.5313 -0.9871 5.5323 9 6 -0.7259 0.8292 4.4608 10 1 -1.3961 1.1166 3.6642 11 6 -0.6440 1.6013 5.6114 12 7 0.2994 1.3634 6.4979 13 14 -1.8728 2.9780 5.9018 14 1 -2.8251 3.0397 4.7640 15 1 -2.6191 2.7185 7.1591 16 1 -1.1506 4.2708 6.0128 17 6 2.7750 -1.7990 1.0726 18 8 3.1227 -2.4114 2.0638 19 6 3.1816 -2.2695 -0.2659 20 6 4.5020 -2.6871 -0.4872 21 6 4.8878 -3.1284 -1.7166 22 6 3.9669 -3.1566 -2.7696 23 6 4.0465 -3.5552 -4.1745 24 6 2.8278 -3.3614 -4.7086 25 7 1.9754 -2.8723 -3.7604 26 6 0.5658 -2.5425 -3.9854 27 6 2.6392 -2.7339 -2.5606 28 6 2.2535 -2.2914 -1.3040 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 2.4852 -0.4234 3.2234 37 1 1.5657 0.9062 2.4784 38 1 -0.4235 -0.5646 2.3089 39 1 0.4960 -1.8942 3.0537 40 1 1.4557 -0.5187 5.8701 41 1 -0.2184 -0.9217 6.3208 42 1 0.7199 -2.0344 5.2962 43 1 0.3568 1.9033 7.3018 44 1 5.2159 -2.6622 0.3228 45 1 5.9050 -3.4528 -1.8795 46 1 4.9190 -3.9335 -4.6862 47 1 2.5620 -3.5637 -5.7355 48 1 0.4815 -1.5017 -4.2980 49 1 0.1611 -3.1895 -4.7637 50 1 0.0060 -2.6910 -3.0620 51 1 1.2385 -1.9648 -1.1317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717952384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:31 Heat of formation + Delta-G solvation = 52.633058 kcal Electronic energy + Delta-G solvation = -30841.043975 eV Core-core repulsion = 26934.935587 eV Total energy + Delta-G solvation = -3906.108388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.41209 -41.20127 -38.28230 -37.72170 -37.17678 -34.07559 -33.54142 -32.56668 -31.54879 -30.76061 -29.34776 -28.17596 -27.92751 -27.09912 -25.57109 -24.40869 -23.15810 -22.52487 -22.23126 -21.37323 -19.85332 -18.90707 -18.47655 -17.97408 -17.29646 -17.04296 -16.74256 -16.25271 -16.09155 -15.93569 -15.54097 -15.35507 -15.00163 -14.91331 -14.61857 -14.38421 -14.27405 -14.07876 -13.96419 -13.86509 -13.66391 -13.25436 -13.20508 -13.08981 -12.95514 -12.85908 -12.78153 -12.67842 -12.51096 -12.28222 -12.17703 -12.06909 -12.03848 -11.92431 -11.73286 -11.44304 -10.95390 -10.69623 -10.50641 -9.85839 -9.20863 -8.78329 -8.55901 -7.82721 -5.34977 -0.18124 0.47972 1.46833 1.47620 1.57126 1.58640 1.85154 1.86862 2.05355 2.51342 2.84418 3.32023 3.38957 3.68273 3.74295 3.88527 3.92031 3.96731 4.09997 4.12362 4.15516 4.31652 4.33019 4.50341 4.54015 4.54840 4.60843 4.62117 4.67863 4.73524 4.75714 4.79124 4.79652 4.88910 4.95151 4.98557 5.00574 5.03345 5.08474 5.25196 5.30140 5.33623 5.40761 5.50691 5.56997 5.64019 5.65400 5.71564 5.78946 6.17892 6.31230 6.41449 6.44423 7.10085 7.13135 7.81371 8.30262 9.21548 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.002724 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.962054 B =10277.281321 C =11040.257635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 C -0.160 4.160 4 N -0.589 5.589 5 C 0.115 3.885 6 C 0.147 3.853 7 N -0.614 5.614 8 C 0.180 3.820 9 C -0.260 4.260 10 H 0.078 0.922 11 C -0.055 4.055 12 N -0.942 5.942 13 Si 0.974 3.026 14 H -0.260 1.260 15 H -0.293 1.293 16 H -0.292 1.292 17 C 0.550 3.450 18 O -0.584 6.584 19 C -0.123 4.123 20 C -0.115 4.115 21 C -0.075 4.075 22 C -0.107 4.107 23 C -0.228 4.228 24 C 0.073 3.927 25 N -0.484 5.484 26 C 0.066 3.934 27 C 0.070 3.930 28 C -0.090 4.090 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.124 0.876 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.028 0.972 40 H 0.003 0.997 41 H 0.022 0.978 42 H 0.014 0.986 43 H 0.248 0.752 44 H 0.119 0.881 45 H 0.149 0.851 46 H 0.167 0.833 47 H 0.211 0.789 48 H 0.085 0.915 49 H 0.110 0.890 50 H 0.080 0.920 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 -6.922 -30.788 31.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.002 3.998 3 C -0.218 4.218 4 N -0.321 5.321 5 C -0.010 4.010 6 C 0.020 3.980 7 N -0.338 5.338 8 C 0.034 3.966 9 C -0.390 4.390 10 H 0.096 0.904 11 C -0.250 4.250 12 N -0.588 5.588 13 Si 0.801 3.199 14 H -0.184 1.184 15 H -0.221 1.221 16 H -0.219 1.219 17 C 0.340 3.660 18 O -0.466 6.466 19 C -0.128 4.128 20 C -0.136 4.136 21 C -0.094 4.094 22 C -0.112 4.112 23 C -0.252 4.252 24 C -0.053 4.053 25 N -0.167 5.167 26 C -0.075 4.075 27 C -0.036 4.036 28 C -0.111 4.111 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.021 0.979 41 H 0.041 0.959 42 H 0.033 0.967 43 H 0.057 0.943 44 H 0.137 0.863 45 H 0.166 0.834 46 H 0.184 0.816 47 H 0.228 0.772 48 H 0.104 0.896 49 H 0.129 0.871 50 H 0.098 0.902 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.732 -7.068 -30.201 31.137 hybrid contribution -0.163 0.816 1.467 1.686 sum 2.570 -6.252 -28.734 29.519 Atomic orbital electron populations 1.22302 0.93610 1.02642 1.03700 1.22054 0.95619 0.94186 0.87985 1.22145 1.01060 0.95417 1.03200 1.48189 1.50040 1.26210 1.07634 1.21964 0.98226 0.98775 0.82062 1.21331 0.94754 0.95270 0.86683 1.44156 1.59538 1.29419 1.00686 1.20518 0.96989 0.90740 0.88312 1.19591 1.15208 1.00768 1.03415 0.90383 1.25938 0.99710 1.00778 0.98539 1.70270 1.34403 1.42354 1.11784 0.85106 0.78434 0.78515 0.77802 1.18407 1.22050 1.21910 1.18841 0.77516 0.80385 0.89234 1.90769 1.57701 1.57208 1.40877 1.19378 0.96007 1.05606 0.91768 1.20613 0.94419 1.00481 0.98040 1.20369 0.99990 0.98556 0.90452 1.19782 0.92864 1.02801 0.95774 1.22023 0.99501 1.11984 0.91717 1.22560 0.89025 0.97986 0.95732 1.44125 1.11203 1.54606 1.06741 1.22304 0.77023 1.03536 1.04596 1.18116 0.92972 1.04502 0.88042 1.20225 0.99921 1.01527 0.89429 0.88275 0.92199 0.92955 0.85880 0.93488 0.93104 0.88611 0.94430 0.90825 0.91284 0.95339 0.97865 0.95884 0.96707 0.94295 0.86320 0.83356 0.81562 0.77218 0.89602 0.87146 0.90161 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 7.80 71.98 0.56 -3.03 16 2 C 0.10 2.54 2.42 44.99 0.11 2.65 16 3 C -0.16 -3.77 9.15 71.98 0.66 -3.11 16 4 N -0.59 -20.11 2.40 -801.50 -1.92 -22.04 16 5 C 0.11 4.87 5.15 86.38 0.44 5.31 16 6 C 0.15 6.57 5.76 86.38 0.50 7.07 16 7 N -0.61 -32.95 2.92 -726.96 -2.12 -35.07 16 8 C 0.18 9.93 9.01 127.77 1.15 11.08 16 9 C -0.26 -14.41 9.66 84.03 0.81 -13.60 16 10 H 0.08 4.08 7.84 -2.91 -0.02 4.06 16 11 C -0.05 -3.12 5.17 84.86 0.44 -2.68 16 12 N -0.94 -57.49 10.59 21.65 0.23 -57.26 16 13 Si 0.97 45.19 29.56 68.60 2.03 47.21 16 14 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 15 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 16 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 17 C 0.55 20.43 7.27 86.71 0.63 21.06 16 18 O -0.58 -27.17 16.58 -4.01 -0.07 -27.24 16 19 C -0.12 -3.64 5.28 -20.07 -0.11 -3.75 16 20 C -0.12 -3.18 9.59 22.28 0.21 -2.96 16 21 C -0.08 -1.66 10.03 22.20 0.22 -1.44 16 22 C -0.11 -2.21 6.37 -20.14 -0.13 -2.34 16 23 C -0.23 -3.21 11.08 23.49 0.26 -2.95 16 24 C 0.07 0.73 11.28 83.09 0.94 1.67 16 25 N -0.48 -6.39 3.18 -539.40 -1.71 -8.11 16 26 C 0.07 0.39 11.02 127.77 1.41 1.80 16 27 C 0.07 1.42 6.80 38.96 0.26 1.69 16 28 C -0.09 -2.10 7.19 22.63 0.16 -1.94 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.27 7.65 -2.39 -0.02 1.25 16 31 H 0.05 1.45 6.13 -2.39 -0.01 1.43 16 32 H 0.12 2.64 3.67 -2.38 -0.01 2.63 16 33 H 0.05 1.31 6.63 -2.39 -0.02 1.29 16 34 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.86 7.48 -2.39 -0.02 1.84 16 37 H 0.07 3.18 6.37 -2.38 -0.02 3.16 16 38 H 0.07 2.80 5.33 -2.39 -0.01 2.79 16 39 H 0.03 1.32 7.86 -2.38 -0.02 1.30 16 40 H 0.00 0.18 7.33 -2.39 -0.02 0.17 16 41 H 0.02 1.31 7.32 -2.39 -0.02 1.30 16 42 H 0.01 0.74 7.84 -2.38 -0.02 0.72 16 43 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 44 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 45 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 46 H 0.17 1.58 8.06 -2.92 -0.02 1.55 16 47 H 0.21 0.23 8.06 -2.91 -0.02 0.21 16 48 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.11 0.10 8.13 -2.39 -0.02 0.08 16 50 H 0.08 0.55 8.10 -2.39 -0.02 0.53 16 51 H 0.14 2.89 5.47 -2.91 -0.02 2.88 16 Total: -1.00 -78.75 402.80 5.89 -72.85 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.93 Total: 15.12 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 8.54 Total: 14.53 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -5.53 Total: -122.47 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.07 Total: -27.24 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -78.75 5.89 -72.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717952384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.487 kcal (2) G-P(sol) polarization free energy of solvation -78.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds