Wall clock time and date at job start Wed Apr 1 2020 01:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47146 * 2 1 4 4 F 1.39903 * 109.46867 * 240.00013 * 2 1 3 5 5 C 1.50699 * 109.46933 * 119.99905 * 2 1 3 6 6 O 1.21285 * 120.00324 * 348.60425 * 5 2 1 7 7 N 1.34777 * 119.99873 * 168.60447 * 5 2 1 8 8 C 1.46927 * 120.63204 * 5.09472 * 7 5 2 9 9 C 1.53196 * 108.77673 * 233.58865 * 8 7 5 10 10 C 1.53037 * 109.31303 * 305.36309 * 9 8 7 11 11 C 1.53044 * 109.53500 * 61.36546 * 10 9 8 12 12 C 1.46924 * 120.63114 * 185.07548 * 7 5 2 13 13 H 1.09001 * 109.70536 * 246.27145 * 12 7 5 14 14 C 1.52998 * 109.58654 * 6.62465 * 12 7 5 15 15 N 1.46496 * 109.47325 * 287.35767 * 14 12 7 16 16 C 1.34779 * 120.00641 * 185.41398 * 15 14 12 17 17 O 1.21286 * 119.99414 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00367 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47139 * 180.02562 * 18 16 15 20 20 N 1.46496 * 109.47414 * 180.02562 * 19 18 16 21 21 C 1.36938 * 120.00315 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99689 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99931 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99970 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99694 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47231 * 60.00031 * 25 23 21 27 27 H 1.48501 * 109.47068 * 179.97438 * 25 23 21 28 28 H 1.48489 * 109.47348 * 299.99598 * 25 23 21 29 29 H 1.09001 * 109.47051 * 300.00021 * 1 2 3 30 30 H 1.09004 * 109.46693 * 59.99942 * 1 2 3 31 31 H 1.08993 * 109.47093 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46860 * 184.28081 * 3 2 1 33 33 H 1.08999 * 109.47286 * 304.27494 * 3 2 1 34 34 H 1.08994 * 109.47580 * 64.27822 * 3 2 1 35 35 H 1.08997 * 109.58794 * 113.80258 * 8 7 5 36 36 H 1.09003 * 109.70340 * 353.44631 * 8 7 5 37 37 H 1.09002 * 109.49371 * 185.40968 * 9 8 7 38 38 H 1.09005 * 109.49662 * 65.31626 * 9 8 7 39 39 H 1.08998 * 109.46078 * 301.35019 * 10 9 8 40 40 H 1.08999 * 109.45090 * 181.37637 * 10 9 8 41 41 H 1.09004 * 109.49374 * 178.68609 * 11 10 9 42 42 H 1.08996 * 109.52688 * 58.60422 * 11 10 9 43 43 H 1.09008 * 109.47125 * 167.35784 * 14 12 7 44 44 H 1.09001 * 109.47215 * 47.36338 * 14 12 7 45 45 H 0.97006 * 120.00083 * 5.41531 * 15 14 12 46 46 H 1.08997 * 109.46898 * 300.00170 * 18 16 15 47 47 H 1.08999 * 109.46694 * 60.00444 * 18 16 15 48 48 H 1.09004 * 109.47380 * 300.00212 * 19 18 16 49 49 H 1.09003 * 109.47205 * 60.00077 * 19 18 16 50 50 H 0.96998 * 119.99836 * 0.02562 * 20 19 18 51 51 H 0.96999 * 120.00215 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2305 6 8 1.2637 -0.9881 2.1266 7 7 3.3357 -1.0371 1.3351 8 6 4.2990 -0.6103 0.3111 9 6 5.0571 -1.8412 -0.1963 10 6 5.6856 -2.5736 0.9914 11 6 4.5838 -3.0436 1.9440 12 6 3.8204 -1.8264 2.4756 13 1 4.4850 -1.2172 3.0883 14 6 2.6318 -2.2942 3.3177 15 7 2.0759 -1.1555 4.0529 16 6 1.0864 -1.3489 4.9474 17 8 0.6566 -2.4658 5.1440 18 6 0.5150 -0.1775 5.7040 19 6 -0.5849 -0.6676 6.6478 20 7 -1.1409 0.4711 7.3829 21 6 -2.1463 0.2746 8.2916 22 1 -2.5290 -0.7200 8.4667 23 6 -2.6734 1.3537 8.9877 24 7 -2.2065 2.5657 8.7747 25 14 -4.0443 1.0854 10.2278 26 1 -3.5739 0.1656 11.2946 27 1 -4.4279 2.3871 10.8310 28 1 -5.2206 0.4904 9.5444 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1274 1.4433 -0.0767 33 1 1.6155 1.9779 -0.8492 34 1 1.7407 1.9337 0.9258 35 1 5.0033 0.0993 0.7450 36 1 3.7700 -0.1397 -0.5177 37 1 5.8405 -1.5271 -0.8860 38 1 4.3651 -2.5083 -0.7103 39 1 6.3586 -1.8982 1.5197 40 1 6.2460 -3.4361 0.6307 41 1 5.0305 -3.5854 2.7778 42 1 3.8962 -3.6997 1.4104 43 1 2.9639 -3.0553 4.0239 44 1 1.8665 -2.7137 2.6647 45 1 2.4199 -0.2622 3.8958 46 1 1.3045 0.3005 6.2838 47 1 0.0961 0.5407 4.9992 48 1 -1.3745 -1.1460 6.0682 49 1 -0.1656 -1.3857 7.3525 50 1 -0.7974 1.3644 7.2253 51 1 -2.5746 3.3197 9.2613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718001244.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:09 Heat of formation + Delta-G solvation = -81.438722 kcal Electronic energy + Delta-G solvation = -31912.983736 eV Core-core repulsion = 27570.292335 eV Total energy + Delta-G solvation = -4342.691401 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -48.41885 -41.12164 -38.95611 -37.96124 -35.24892 -34.62596 -33.77938 -33.13832 -32.01594 -31.53591 -29.02666 -27.91086 -27.11768 -25.27658 -24.03536 -23.84938 -22.23829 -21.42352 -20.94165 -20.01739 -19.45089 -17.86590 -17.14929 -16.80404 -16.42621 -16.20072 -15.97138 -15.70003 -15.53492 -15.16396 -14.78561 -14.61608 -14.42930 -14.17750 -13.81963 -13.56856 -13.43080 -13.37628 -13.09589 -12.99846 -12.87996 -12.78702 -12.52497 -12.43999 -12.39503 -12.34154 -12.08551 -11.67262 -11.59596 -11.34255 -11.14403 -10.92285 -10.91870 -10.89807 -10.68351 -10.59728 -10.03814 -9.63513 -9.60631 -9.22679 -9.08732 -8.76336 -8.42578 -6.81114 -5.67231 -2.94802 2.09776 2.39073 3.22044 3.48866 3.52328 3.55238 3.58053 3.72095 3.99384 4.14800 4.25495 4.32465 4.36597 4.43874 4.57175 4.69543 4.71572 4.75814 4.94937 5.01505 5.07715 5.14641 5.24333 5.27614 5.31085 5.36990 5.39510 5.48145 5.53492 5.57409 5.60162 5.62076 5.65147 5.74731 5.80158 5.83821 5.86728 5.92802 6.18594 6.28187 6.39926 6.75534 6.89717 7.03672 7.08515 7.71854 7.81620 7.86336 8.52300 8.73566 9.63115 10.21177 10.56885 11.56213 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.002404 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.315836 B =11643.058984 C =12630.743547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 C -0.178 4.178 4 F -0.196 7.196 5 C 0.486 3.514 6 O -0.482 6.482 7 N -0.603 5.603 8 C 0.093 3.907 9 C -0.134 4.134 10 C -0.119 4.119 11 C -0.128 4.128 12 C 0.134 3.866 13 H 0.081 0.919 14 C 0.133 3.867 15 N -0.703 5.703 16 C 0.524 3.476 17 O -0.548 6.548 18 C -0.143 4.143 19 C 0.170 3.830 20 N -0.736 5.736 21 C -0.233 4.233 22 H 0.071 0.929 23 C -0.018 4.018 24 N -0.938 5.938 25 Si 0.909 3.091 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.392 0.608 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.027 0.973 49 H 0.026 0.974 50 H 0.382 0.618 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.767 -4.830 -25.801 33.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.081 3.919 3 C -0.236 4.236 4 F -0.176 7.176 5 C 0.271 3.729 6 O -0.354 6.354 7 N -0.338 5.338 8 C -0.030 4.030 9 C -0.173 4.173 10 C -0.157 4.157 11 C -0.167 4.167 12 C 0.032 3.968 13 H 0.099 0.901 14 C 0.009 3.991 15 N -0.354 5.354 16 C 0.311 3.689 17 O -0.426 6.426 18 C -0.184 4.184 19 C 0.042 3.958 20 N -0.380 5.380 21 C -0.364 4.364 22 H 0.089 0.911 23 C -0.213 4.213 24 N -0.588 5.588 25 Si 0.740 3.260 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.225 0.775 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.045 0.955 49 H 0.044 0.956 50 H 0.215 0.785 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 19.902 -5.900 -25.080 32.556 hybrid contribution -0.272 0.680 0.258 0.776 sum 19.630 -5.220 -24.823 32.074 Atomic orbital electron populations 1.22176 0.90484 1.04663 1.04286 1.21255 0.97096 0.92916 0.80657 1.22550 1.02712 0.93195 1.05136 1.92846 1.89764 1.82819 1.52198 1.20919 0.82621 0.80557 0.88794 1.91038 1.55588 1.50843 1.37951 1.48100 1.07304 1.53911 1.24533 1.22149 0.92160 0.97055 0.91610 1.21900 0.99952 0.97365 0.98045 1.21515 0.97451 1.00500 0.96198 1.21903 0.97890 0.96815 1.00087 1.21584 0.95911 0.92719 0.86635 0.90078 1.21326 0.93713 0.89585 0.94465 1.45784 1.38616 1.09821 1.41194 1.20600 0.78686 0.90747 0.78852 1.90653 1.59831 1.25775 1.66313 1.21765 1.00535 0.96631 0.99454 1.20349 0.92460 0.90830 0.92164 1.42361 1.43228 1.04955 1.47464 1.19234 1.09964 0.93597 1.13604 0.91131 1.24726 1.00442 0.95348 1.00780 1.69650 1.45372 0.98111 1.45624 0.86233 0.82057 0.76472 0.81272 1.21288 1.21754 1.21281 0.89308 0.90739 0.90830 0.90590 0.89997 0.89651 0.91229 0.88078 0.90586 0.91146 0.91595 0.91298 0.90110 0.90976 0.91581 0.90268 0.77488 0.89500 0.89269 0.95532 0.95592 0.78500 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 8.29 37.16 0.31 -1.09 16 2 C 0.10 0.84 1.20 -91.77 -0.11 0.73 16 3 C -0.18 -1.03 8.59 37.15 0.32 -0.71 16 4 F -0.20 -1.69 14.54 2.25 0.03 -1.66 16 5 C 0.49 4.82 6.36 -10.99 -0.07 4.75 16 6 O -0.48 -6.42 9.65 5.55 0.05 -6.37 16 7 N -0.60 -4.65 2.97 -165.22 -0.49 -5.14 16 8 C 0.09 0.49 5.00 -3.71 -0.02 0.47 16 9 C -0.13 -0.64 6.08 -26.61 -0.16 -0.80 16 10 C -0.12 -0.56 5.88 -26.69 -0.16 -0.71 16 11 C -0.13 -0.80 5.34 -26.61 -0.14 -0.95 16 12 C 0.13 1.06 2.91 -67.60 -0.20 0.86 16 13 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 14 C 0.13 1.57 4.31 -4.04 -0.02 1.56 16 15 N -0.70 -9.41 3.15 -60.29 -0.19 -9.60 16 16 C 0.52 9.33 7.54 -10.99 -0.08 9.25 16 17 O -0.55 -11.93 15.97 5.55 0.09 -11.84 16 18 C -0.14 -2.62 5.81 -27.89 -0.16 -2.78 16 19 C 0.17 3.98 5.55 -4.05 -0.02 3.96 16 20 N -0.74 -20.14 5.60 -59.91 -0.34 -20.47 16 21 C -0.23 -6.97 9.99 -15.06 -0.15 -7.13 16 22 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 23 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 24 N -0.94 -29.30 13.06 55.49 0.72 -28.57 16 25 Si 0.91 23.42 29.55 -169.99 -5.02 18.39 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H 0.09 0.86 7.98 -51.93 -0.41 0.45 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.34 5.78 -51.93 -0.30 0.04 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.10 0.54 3.70 -51.93 -0.19 0.34 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.81 8.08 -51.92 -0.42 0.39 16 44 H 0.08 1.15 6.41 -51.93 -0.33 0.81 16 45 H 0.39 4.46 7.97 -40.82 -0.33 4.13 16 46 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 48 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 49 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 50 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 51 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -36.52 398.10 -8.50 -45.03 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -8.60 Total: 7.45 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -0.76 Total: 6.78 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.29 Total: -63.78 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.14 Total: -18.21 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.03 Total: -1.66 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.52 -8.50 -45.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718001244.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.412 kcal (2) G-P(sol) polarization free energy of solvation -36.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds