Wall clock time and date at job start Wed Apr 1 2020 01:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47146 * 2 1 4 4 F 1.39903 * 109.46867 * 240.00013 * 2 1 3 5 5 C 1.50699 * 109.46933 * 119.99905 * 2 1 3 6 6 O 1.21285 * 120.00324 * 348.60425 * 5 2 1 7 7 N 1.34777 * 119.99873 * 168.60447 * 5 2 1 8 8 C 1.46927 * 120.63204 * 5.09472 * 7 5 2 9 9 C 1.53196 * 108.77673 * 233.58865 * 8 7 5 10 10 C 1.53037 * 109.31303 * 305.36309 * 9 8 7 11 11 C 1.53044 * 109.53500 * 61.36546 * 10 9 8 12 12 C 1.46924 * 120.63114 * 185.07548 * 7 5 2 13 13 H 1.09001 * 109.70536 * 246.27145 * 12 7 5 14 14 C 1.52998 * 109.58654 * 6.62465 * 12 7 5 15 15 N 1.46496 * 109.47325 * 287.35767 * 14 12 7 16 16 C 1.34779 * 120.00641 * 185.41398 * 15 14 12 17 17 O 1.21286 * 119.99414 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00367 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47139 * 180.02562 * 18 16 15 20 20 N 1.46496 * 109.47414 * 180.02562 * 19 18 16 21 21 C 1.36938 * 120.00315 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99689 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99931 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99970 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99694 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47231 * 60.00031 * 25 23 21 27 27 H 1.48501 * 109.47068 * 179.97438 * 25 23 21 28 28 H 1.48489 * 109.47348 * 299.99598 * 25 23 21 29 29 H 1.09001 * 109.47051 * 300.00021 * 1 2 3 30 30 H 1.09004 * 109.46693 * 59.99942 * 1 2 3 31 31 H 1.08993 * 109.47093 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46860 * 184.28081 * 3 2 1 33 33 H 1.08999 * 109.47286 * 304.27494 * 3 2 1 34 34 H 1.08994 * 109.47580 * 64.27822 * 3 2 1 35 35 H 1.08997 * 109.58794 * 113.80258 * 8 7 5 36 36 H 1.09003 * 109.70340 * 353.44631 * 8 7 5 37 37 H 1.09002 * 109.49371 * 185.40968 * 9 8 7 38 38 H 1.09005 * 109.49662 * 65.31626 * 9 8 7 39 39 H 1.08998 * 109.46078 * 301.35019 * 10 9 8 40 40 H 1.08999 * 109.45090 * 181.37637 * 10 9 8 41 41 H 1.09004 * 109.49374 * 178.68609 * 11 10 9 42 42 H 1.08996 * 109.52688 * 58.60422 * 11 10 9 43 43 H 1.09008 * 109.47125 * 167.35784 * 14 12 7 44 44 H 1.09001 * 109.47215 * 47.36338 * 14 12 7 45 45 H 0.97006 * 120.00083 * 5.41531 * 15 14 12 46 46 H 1.08997 * 109.46898 * 300.00170 * 18 16 15 47 47 H 1.08999 * 109.46694 * 60.00444 * 18 16 15 48 48 H 1.09004 * 109.47380 * 300.00212 * 19 18 16 49 49 H 1.09003 * 109.47205 * 60.00077 * 19 18 16 50 50 H 0.96998 * 119.99836 * 0.02562 * 20 19 18 51 51 H 0.96999 * 120.00215 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2305 6 8 1.2637 -0.9881 2.1266 7 7 3.3357 -1.0371 1.3351 8 6 4.2990 -0.6103 0.3111 9 6 5.0571 -1.8412 -0.1963 10 6 5.6856 -2.5736 0.9914 11 6 4.5838 -3.0436 1.9440 12 6 3.8204 -1.8264 2.4756 13 1 4.4850 -1.2172 3.0883 14 6 2.6318 -2.2942 3.3177 15 7 2.0759 -1.1555 4.0529 16 6 1.0864 -1.3489 4.9474 17 8 0.6566 -2.4658 5.1440 18 6 0.5150 -0.1775 5.7040 19 6 -0.5849 -0.6676 6.6478 20 7 -1.1409 0.4711 7.3829 21 6 -2.1463 0.2746 8.2916 22 1 -2.5290 -0.7200 8.4667 23 6 -2.6734 1.3537 8.9877 24 7 -2.2065 2.5657 8.7747 25 14 -4.0443 1.0854 10.2278 26 1 -3.5739 0.1656 11.2946 27 1 -4.4279 2.3871 10.8310 28 1 -5.2206 0.4904 9.5444 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1274 1.4433 -0.0767 33 1 1.6155 1.9779 -0.8492 34 1 1.7407 1.9337 0.9258 35 1 5.0033 0.0993 0.7450 36 1 3.7700 -0.1397 -0.5177 37 1 5.8405 -1.5271 -0.8860 38 1 4.3651 -2.5083 -0.7103 39 1 6.3586 -1.8982 1.5197 40 1 6.2460 -3.4361 0.6307 41 1 5.0305 -3.5854 2.7778 42 1 3.8962 -3.6997 1.4104 43 1 2.9639 -3.0553 4.0239 44 1 1.8665 -2.7137 2.6647 45 1 2.4199 -0.2622 3.8958 46 1 1.3045 0.3005 6.2838 47 1 0.0961 0.5407 4.9992 48 1 -1.3745 -1.1460 6.0682 49 1 -0.1656 -1.3857 7.3525 50 1 -0.7974 1.3644 7.2253 51 1 -2.5746 3.3197 9.2613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718001244.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:07 Heat of formation + Delta-G solvation = -106.317365 kcal Electronic energy + Delta-G solvation = -31914.062555 eV Core-core repulsion = 27570.292335 eV Total energy + Delta-G solvation = -4343.770220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.09470 -41.91219 -40.32745 -38.61136 -36.86362 -36.05054 -34.58044 -33.87017 -33.71876 -32.59237 -30.82051 -28.50031 -28.01722 -26.39281 -25.52627 -24.59619 -23.48863 -22.70376 -21.63048 -21.25569 -20.22647 -19.35179 -18.51081 -17.75589 -17.43462 -17.15913 -16.90640 -16.79099 -16.52074 -16.39509 -15.89457 -15.69876 -15.32990 -15.20352 -15.09264 -14.87793 -14.53832 -14.44317 -14.23977 -14.01899 -13.84528 -13.58759 -13.41056 -13.27064 -13.18127 -13.02539 -13.00997 -12.87655 -12.82050 -12.55832 -12.39096 -12.20937 -12.16729 -12.13443 -11.85596 -11.83295 -11.63861 -11.39481 -10.98085 -10.85288 -10.30238 -9.89571 -9.48320 -9.05887 -7.98176 -5.28234 1.33307 1.45860 1.50096 1.56324 1.72658 1.82095 2.29375 2.57219 3.06010 3.34628 3.40411 3.48727 3.65209 3.74273 3.78278 3.82849 3.95477 4.05664 4.09000 4.15549 4.22089 4.26496 4.39176 4.46900 4.54987 4.57664 4.60114 4.63443 4.68998 4.71704 4.77416 4.87975 4.92619 4.96282 5.04587 5.08817 5.11843 5.14413 5.14965 5.17520 5.23201 5.44975 5.45651 5.51143 5.61291 6.23061 6.24158 6.63661 6.98588 7.30604 7.39162 8.01117 8.30659 9.25041 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.002404 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.315836 B =11643.058984 C =12630.743547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.104 3.896 3 C -0.174 4.174 4 F -0.197 7.197 5 C 0.481 3.519 6 O -0.527 6.527 7 N -0.597 5.597 8 C 0.087 3.913 9 C -0.132 4.132 10 C -0.114 4.114 11 C -0.126 4.126 12 C 0.141 3.859 13 H 0.103 0.897 14 C 0.136 3.864 15 N -0.677 5.677 16 C 0.523 3.477 17 O -0.597 6.597 18 C -0.129 4.129 19 C 0.175 3.825 20 N -0.742 5.742 21 C -0.256 4.256 22 H 0.068 0.932 23 C -0.070 4.070 24 N -0.966 5.966 25 Si 0.978 3.022 26 H -0.278 1.278 27 H -0.287 1.287 28 H -0.279 1.279 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.405 0.595 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.006 0.994 49 H 0.013 0.987 50 H 0.378 0.622 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.916 -3.801 -26.806 35.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.083 3.917 3 C -0.231 4.231 4 F -0.178 7.178 5 C 0.266 3.734 6 O -0.403 6.403 7 N -0.331 5.331 8 C -0.034 4.034 9 C -0.170 4.170 10 C -0.152 4.152 11 C -0.165 4.165 12 C 0.038 3.962 13 H 0.121 0.879 14 C 0.012 3.988 15 N -0.327 5.327 16 C 0.310 3.690 17 O -0.478 6.478 18 C -0.169 4.169 19 C 0.047 3.953 20 N -0.386 5.386 21 C -0.387 4.387 22 H 0.086 0.914 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.805 3.195 26 H -0.204 1.204 27 H -0.213 1.213 28 H -0.205 1.205 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.240 0.760 46 H 0.126 0.874 47 H 0.118 0.882 48 H 0.024 0.976 49 H 0.031 0.969 50 H 0.211 0.789 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 22.130 -4.861 -26.150 34.600 hybrid contribution -0.896 0.317 0.475 1.062 sum 21.235 -4.544 -25.674 33.626 Atomic orbital electron populations 1.22161 0.91437 1.03384 1.04627 1.21232 0.96443 0.94231 0.79792 1.22553 1.03859 0.91056 1.05610 1.92844 1.89720 1.83094 1.52156 1.21283 0.82967 0.80182 0.88930 1.91015 1.56730 1.52873 1.39703 1.48204 1.07101 1.52936 1.24845 1.22401 0.91980 0.97852 0.91133 1.21900 1.00080 0.96725 0.98340 1.21507 0.96819 1.01137 0.95695 1.21904 0.98011 0.95806 1.00729 1.21579 0.94246 0.93861 0.86526 0.87943 1.21336 0.94332 0.88965 0.94179 1.45571 1.36748 1.11090 1.39248 1.20475 0.79365 0.89685 0.79490 1.90632 1.61726 1.27298 1.68173 1.21564 0.99506 0.96946 0.98913 1.20276 0.93227 0.89563 0.92187 1.42462 1.42997 1.05654 1.47471 1.19567 1.10920 0.93756 1.14498 0.91422 1.25589 1.02931 0.95038 1.02726 1.69791 1.46549 0.98748 1.46514 0.85162 0.78959 0.76570 0.78762 1.20379 1.21298 1.20517 0.90494 0.88790 0.92946 0.88831 0.88646 0.89928 0.88807 0.87889 0.88457 0.92876 0.90137 0.90468 0.89209 0.92623 0.92112 0.93195 0.75959 0.87357 0.88232 0.97627 0.96927 0.78925 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 8.29 71.98 0.60 -2.25 16 2 C 0.10 1.63 1.20 -11.54 -0.01 1.61 16 3 C -0.17 -1.62 8.59 71.98 0.62 -1.00 16 4 F -0.20 -3.19 14.54 44.97 0.65 -2.53 16 5 C 0.48 9.34 6.36 87.66 0.56 9.90 16 6 O -0.53 -14.48 9.65 -3.05 -0.03 -14.51 16 7 N -0.60 -8.24 2.97 -795.02 -2.36 -10.60 16 8 C 0.09 0.67 5.00 86.36 0.43 1.10 16 9 C -0.13 -0.89 6.08 30.67 0.19 -0.70 16 10 C -0.11 -0.73 5.88 30.62 0.18 -0.55 16 11 C -0.13 -1.38 5.34 30.67 0.16 -1.21 16 12 C 0.14 2.00 2.91 44.97 0.13 2.13 16 13 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 14 C 0.14 3.25 4.31 86.38 0.37 3.62 16 15 N -0.68 -18.05 3.15 -463.06 -1.46 -19.51 16 16 C 0.52 19.03 7.54 87.66 0.66 19.69 16 17 O -0.60 -27.12 15.97 -3.05 -0.05 -27.17 16 18 C -0.13 -4.74 5.81 29.85 0.17 -4.57 16 19 C 0.17 8.44 5.55 86.38 0.48 8.92 16 20 N -0.74 -41.38 5.60 -343.45 -1.92 -43.30 16 21 C -0.26 -15.54 9.99 84.03 0.84 -14.70 16 22 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 23 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 24 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 25 Si 0.98 48.11 29.55 68.60 2.03 50.14 16 26 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 28 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 29 H 0.08 1.56 7.98 -2.39 -0.02 1.54 16 30 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 0.54 5.78 -2.38 -0.01 0.53 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.10 0.79 3.70 -2.39 -0.01 0.78 16 37 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 1.52 8.08 -2.38 -0.02 1.50 16 44 H 0.05 1.53 6.41 -2.39 -0.02 1.52 16 45 H 0.40 8.72 7.97 -92.70 -0.74 7.98 16 46 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 47 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 48 H 0.01 0.30 8.10 -2.39 -0.02 0.28 16 49 H 0.01 0.65 8.10 -2.39 -0.02 0.63 16 50 H 0.38 21.30 7.67 -92.71 -0.71 20.59 16 51 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -80.98 398.10 2.47 -78.51 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.51 Total: 30.89 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 5.84 Total: 18.23 kcal Atomic # 7 Polarization: -128.08 SS G_CDS: -5.46 Total: -133.55 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -0.08 Total: -41.68 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.65 Total: -2.53 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -80.98 2.47 -78.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718001244.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.807 kcal (2) G-P(sol) polarization free energy of solvation -80.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds