Wall clock time and date at job start Wed Apr 1 2020 02:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 H 1.09001 * 109.46885 * 305.00226 * 3 2 1 5 5 F 1.39898 * 109.46837 * 64.99765 * 3 2 1 6 6 C 1.50695 * 109.47129 * 185.00079 * 3 2 1 7 7 O 1.21288 * 119.99874 * 314.99764 * 6 3 2 8 8 N 1.34778 * 120.00195 * 135.00452 * 6 3 2 9 9 C 1.46498 * 120.00242 * 180.02562 * 8 6 3 10 10 C 1.52999 * 109.47405 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.53455 * 300.09762 * 10 9 8 12 12 C 1.53118 * 109.50126 * 60.19370 * 10 9 8 13 13 C 1.53123 * 109.15998 * 177.60004 * 12 10 9 14 14 C 1.53041 * 109.27270 * 302.34191 * 13 12 10 15 15 N 1.46847 * 109.52139 * 59.18351 * 14 13 12 16 16 C 1.46899 * 110.99746 * 174.15492 * 15 14 13 17 17 C 1.50701 * 109.47236 * 190.59629 * 16 15 14 18 18 O 1.21297 * 119.99652 * 6.27619 * 17 16 15 19 19 N 1.34775 * 120.00055 * 186.27045 * 17 16 15 20 20 C 1.37101 * 119.99648 * 180.02562 * 19 17 16 21 21 H 1.07992 * 120.00227 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99878 * 180.02562 * 20 19 17 23 23 N 1.31419 * 119.99797 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00450 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47254 * 89.99614 * 24 22 20 26 26 H 1.48500 * 109.47431 * 210.00322 * 24 22 20 27 27 H 1.48508 * 109.46560 * 330.00026 * 24 22 20 28 28 C 1.46840 * 111.19889 * 298.25261 * 15 14 13 29 29 H 1.09004 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47380 * 299.99921 * 1 2 3 31 31 H 1.09007 * 109.47243 * 60.00399 * 1 2 3 32 32 H 1.08998 * 109.47380 * 240.00079 * 2 1 3 33 33 H 1.08997 * 109.46877 * 119.99959 * 2 1 3 34 34 H 0.96999 * 119.99445 * 359.97438 * 8 6 3 35 35 H 1.08998 * 109.47433 * 59.98910 * 9 8 6 36 36 H 1.09007 * 109.46333 * 299.99614 * 9 8 6 37 37 H 1.09004 * 109.47003 * 299.89870 * 11 10 9 38 38 H 1.09007 * 109.47208 * 59.89634 * 11 10 9 39 39 H 1.08995 * 109.47173 * 179.90205 * 11 10 9 40 40 H 1.08993 * 109.52594 * 57.69080 * 12 10 9 41 41 H 1.09005 * 109.52367 * 297.49859 * 12 10 9 42 42 H 1.09000 * 109.50294 * 182.40644 * 13 12 10 43 43 H 1.08999 * 109.53852 * 62.30161 * 13 12 10 44 44 H 1.08994 * 109.46532 * 299.16623 * 14 13 12 45 45 H 1.09004 * 109.45841 * 179.19573 * 14 13 12 46 46 H 1.08995 * 109.47349 * 310.60351 * 16 15 14 47 47 H 1.09004 * 109.46921 * 70.59984 * 16 15 14 48 48 H 0.96996 * 120.00287 * 0.02562 * 19 17 16 49 49 H 0.97001 * 119.99449 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.46796 * 181.76336 * 28 15 14 51 51 H 1.09007 * 109.46297 * 301.73319 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 9 1.6697 2.0680 1.1954 6 6 3.5418 1.4444 -0.1238 7 8 4.2063 0.6812 0.5447 8 7 4.1466 2.2943 -0.9774 9 6 5.6066 2.2957 -1.0982 10 6 6.0322 3.3452 -2.1269 11 6 5.4074 3.0146 -3.4837 12 6 5.5609 4.7288 -1.6706 13 6 6.0425 5.7800 -2.6743 14 6 7.5673 5.7116 -2.7851 15 7 7.9675 4.3690 -3.2253 16 6 9.4136 4.3066 -3.4760 17 6 9.7481 3.0099 -4.1673 18 8 8.8588 2.2679 -4.5278 19 7 11.0352 2.6748 -4.3850 20 6 11.3394 1.4954 -5.0144 21 1 10.5477 0.8351 -5.3361 22 6 12.6664 1.1496 -5.2385 23 7 13.6298 1.9533 -4.8475 24 14 13.0810 -0.4570 -6.0966 25 1 13.1514 -0.2313 -7.5626 26 1 14.3923 -0.9548 -5.6088 27 1 12.0286 -1.4622 -5.8005 28 6 7.5573 3.3474 -2.2536 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6150 2.9044 -1.5122 35 1 5.9453 1.3116 -1.4220 36 1 6.0508 2.5329 -0.1314 37 1 5.7460 2.0311 -3.8096 38 1 4.3211 3.0131 -3.3928 39 1 5.7098 3.7638 -4.2153 40 1 5.9747 4.9483 -0.6864 41 1 4.4721 4.7446 -1.6207 42 1 5.7466 6.7719 -2.3326 43 1 5.5975 5.5834 -3.6498 44 1 8.0120 5.9225 -1.8126 45 1 7.9122 6.4492 -3.5097 46 1 9.7090 5.1428 -4.1096 47 1 9.9494 4.3618 -2.5283 48 1 11.7463 3.2680 -4.0965 49 1 14.5562 1.7117 -5.0036 50 1 7.8950 2.3678 -2.5920 51 1 8.0020 3.5695 -1.2835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724329224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:08 Heat of formation + Delta-G solvation = -156.075067 kcal Electronic energy + Delta-G solvation = -31019.587352 eV Core-core repulsion = 26673.659476 eV Total energy + Delta-G solvation = -4345.927876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.95013 -41.39147 -40.50968 -39.53321 -36.82548 -35.87932 -34.98020 -34.29253 -33.21736 -32.71261 -29.31601 -28.98958 -27.92460 -26.65193 -26.50361 -24.23220 -23.19112 -22.24392 -21.64897 -20.96501 -19.86193 -19.51581 -18.88785 -17.96700 -17.71364 -17.14217 -16.81259 -16.51555 -16.45030 -16.21251 -15.95207 -15.72835 -15.58507 -15.42636 -15.13861 -14.87655 -14.67267 -14.61487 -14.15668 -13.92438 -13.85313 -13.57365 -13.40321 -13.31378 -13.19620 -13.11161 -12.89805 -12.84494 -12.43868 -12.41247 -12.31135 -12.13739 -12.03465 -11.98057 -11.85968 -11.49533 -11.47258 -11.30657 -11.19441 -10.91715 -10.28286 -10.21507 -9.97790 -9.14263 -8.45868 -5.93805 1.27017 1.36982 1.40281 1.52770 1.84144 2.08439 2.28224 2.78861 3.21232 3.32706 3.37833 3.50497 3.64928 3.67681 3.74137 3.85875 3.89742 4.20645 4.24367 4.25358 4.34282 4.39130 4.45088 4.46512 4.50804 4.56637 4.62249 4.71013 4.73616 4.79237 4.84739 4.88296 5.00442 5.04084 5.07044 5.11868 5.13875 5.18686 5.21868 5.34103 5.36723 5.39381 5.41544 5.68560 5.91769 6.10476 6.27347 6.32541 6.62462 6.98543 7.14730 7.59179 8.15173 8.71653 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.002349 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.571933 B =11916.880860 C =13433.235335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.088 3.912 4 H 0.145 0.855 5 F -0.201 7.201 6 C 0.484 3.516 7 O -0.572 6.572 8 N -0.697 5.697 9 C 0.134 3.866 10 C -0.054 4.054 11 C -0.121 4.121 12 C -0.106 4.106 13 C -0.110 4.110 14 C 0.049 3.951 15 N -0.522 5.522 16 C 0.057 3.943 17 C 0.442 3.558 18 O -0.607 6.607 19 N -0.578 5.578 20 C -0.327 4.327 21 H 0.078 0.922 22 C -0.016 4.016 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.274 1.274 28 C 0.071 3.929 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.419 0.581 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.036 0.964 45 H 0.084 0.916 46 H 0.112 0.888 47 H 0.059 0.941 48 H 0.394 0.606 49 H 0.276 0.724 50 H 0.052 0.948 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.594 8.461 7.666 26.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C 0.049 3.951 4 H 0.162 0.838 5 F -0.182 7.182 6 C 0.269 3.731 7 O -0.450 6.450 8 N -0.350 5.350 9 C 0.010 3.990 10 C -0.055 4.055 11 C -0.178 4.178 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.078 4.078 15 N -0.246 5.246 16 C -0.074 4.074 17 C 0.229 3.771 18 O -0.493 6.493 19 N -0.216 5.216 20 C -0.457 4.457 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.199 1.199 28 C -0.058 4.058 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.258 0.742 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.092 0.908 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.130 0.870 47 H 0.077 0.923 48 H 0.228 0.772 49 H 0.086 0.914 50 H 0.071 0.929 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -23.748 7.355 7.465 25.957 hybrid contribution 1.706 -0.385 0.371 1.788 sum -22.042 6.970 7.836 24.410 Atomic orbital electron populations 1.21761 0.92300 1.03380 1.03147 1.22019 0.98747 0.93037 1.04373 1.21820 0.89566 0.97345 0.86357 0.83776 1.92862 1.91869 1.84100 1.49380 1.21635 0.91709 0.80151 0.79646 1.90738 1.67517 1.41077 1.45689 1.45937 1.07733 1.38967 1.42380 1.21231 0.80127 0.98858 0.98823 1.20654 0.93999 0.95499 0.95309 1.21654 0.99564 1.01014 0.95547 1.21672 1.01733 0.92124 0.98789 1.21609 0.93440 0.99525 1.00194 1.22301 0.97561 0.88778 0.99176 1.61416 1.12381 1.04998 1.45855 1.21734 0.89860 0.95898 0.99940 1.20794 0.82470 0.89615 0.84218 1.90481 1.47321 1.54932 1.56530 1.41964 1.06447 1.20175 1.53036 1.19613 0.92649 0.98202 1.35241 0.90399 1.26015 0.94744 1.02464 0.98273 1.69679 1.00484 1.38560 1.47613 0.84960 0.77657 0.77503 0.78423 1.19560 1.19686 1.19922 1.21966 0.95242 0.96156 0.92431 0.91103 0.92385 0.90414 0.89164 0.91760 0.74207 0.93454 0.92065 0.95571 0.90898 0.91590 0.91905 0.89386 0.88881 0.90828 0.94546 0.89751 0.87043 0.92277 0.77197 0.91434 0.92907 0.95528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.83 71.98 0.71 -0.72 16 2 C -0.14 -2.07 5.41 30.60 0.17 -1.91 16 3 C 0.09 1.30 3.77 29.85 0.11 1.41 16 4 H 0.14 0.83 7.99 -2.39 -0.02 0.81 16 5 F -0.20 -3.84 16.75 44.97 0.75 -3.09 16 6 C 0.48 10.70 7.17 87.66 0.63 11.33 16 7 O -0.57 -18.58 16.61 -3.05 -0.05 -18.63 16 8 N -0.70 -12.57 4.98 -463.06 -2.31 -14.87 16 9 C 0.13 3.25 4.57 86.38 0.39 3.64 16 10 C -0.05 -1.23 0.53 -52.13 -0.03 -1.26 16 11 C -0.12 -2.88 7.86 71.98 0.57 -2.31 16 12 C -0.11 -1.69 4.58 30.67 0.14 -1.55 16 13 C -0.11 -1.74 5.74 30.65 0.18 -1.56 16 14 C 0.05 1.03 5.46 86.33 0.47 1.50 16 15 N -0.52 -15.72 3.63 -900.94 -3.27 -18.99 16 16 C 0.06 1.94 5.45 85.56 0.47 2.41 16 17 C 0.44 20.86 7.31 87.66 0.64 21.50 16 18 O -0.61 -32.84 14.29 -3.08 -0.04 -32.89 16 19 N -0.58 -29.82 5.29 -306.98 -1.62 -31.44 16 20 C -0.33 -18.71 9.68 84.04 0.81 -17.89 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 23 N -0.92 -50.35 13.05 21.66 0.28 -50.07 16 24 Si 0.99 43.61 29.55 68.60 2.03 45.63 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 28 C 0.07 2.19 3.84 86.33 0.33 2.52 16 29 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.62 7.93 -2.39 -0.02 0.60 16 31 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.23 8.05 -2.39 -0.02 1.21 16 34 H 0.42 4.50 6.08 -92.71 -0.56 3.94 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.07 1.17 6.86 -2.38 -0.02 1.15 16 39 H 0.07 1.75 6.01 -2.39 -0.01 1.73 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 0.94 6.95 -2.38 -0.02 0.93 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 1.25 6.58 -2.39 -0.02 1.23 16 44 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 1.62 8.01 -2.38 -0.02 1.60 16 46 H 0.11 3.32 7.98 -2.39 -0.02 3.30 16 47 H 0.06 1.87 8.12 -2.38 -0.02 1.85 16 48 H 0.39 19.44 7.90 -92.71 -0.73 18.70 16 49 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 50 H 0.05 2.15 6.06 -2.39 -0.01 2.13 16 51 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -75.26 403.56 1.47 -73.79 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.35 Total: 33.83 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.05 Total: 16.73 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -6.92 Total: -115.38 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -0.09 Total: -51.51 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.75 Total: -3.09 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -75.26 1.47 -73.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724329224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.285 kcal (2) G-P(sol) polarization free energy of solvation -75.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds