Wall clock time and date at job start Wed Apr 1 2020 02:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 H 1.08999 * 109.46957 * 55.00316 * 3 2 1 5 5 F 1.39902 * 109.47359 * 295.00162 * 3 2 1 6 6 C 1.50707 * 109.47090 * 175.00281 * 3 2 1 7 7 O 1.21275 * 119.99872 * 44.99817 * 6 3 2 8 8 N 1.34772 * 119.99778 * 225.00726 * 6 3 2 9 9 C 1.46503 * 120.00003 * 180.02562 * 8 6 3 10 10 H 1.09006 * 109.52253 * 34.86564 * 9 8 6 11 11 C 1.53121 * 109.52110 * 274.68082 * 9 8 6 12 12 C 1.53038 * 109.27911 * 182.43839 * 11 9 8 13 13 N 1.46854 * 109.52021 * 59.17679 * 12 11 9 14 14 C 1.46905 * 110.99603 * 174.16099 * 13 12 11 15 15 C 1.50696 * 109.46937 * 294.20933 * 14 13 12 16 16 O 1.21292 * 120.00259 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99761 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99976 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99986 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99677 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00253 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47399 * 299.99614 * 22 20 18 25 25 H 1.48498 * 109.47295 * 60.00221 * 22 20 18 26 26 C 1.46845 * 111.19752 * 298.25390 * 13 12 11 27 27 C 1.53040 * 109.52074 * 61.74695 * 26 13 12 28 28 C 1.53004 * 109.50338 * 60.75993 * 27 26 13 29 29 C 1.53000 * 109.50311 * 180.87688 * 27 26 13 30 30 H 1.08995 * 109.46642 * 299.99866 * 1 2 3 31 31 H 1.09003 * 109.46819 * 59.99621 * 1 2 3 32 32 H 1.08992 * 109.47328 * 179.97438 * 1 2 3 33 33 H 1.09010 * 109.46874 * 240.00578 * 2 1 3 34 34 H 1.08994 * 109.47398 * 120.00212 * 2 1 3 35 35 H 0.97004 * 120.00383 * 359.97438 * 8 6 3 36 36 H 1.09004 * 109.49648 * 302.37832 * 11 9 8 37 37 H 1.08993 * 109.50595 * 62.45439 * 11 9 8 38 38 H 1.09001 * 109.46247 * 299.16263 * 12 11 9 39 39 H 1.08992 * 109.46008 * 179.18919 * 12 11 9 40 40 H 1.09000 * 109.47082 * 174.21018 * 14 13 12 41 41 H 1.09004 * 109.47143 * 54.20973 * 14 13 12 42 42 H 0.96999 * 120.00043 * 0.02562 * 17 15 14 43 43 H 0.97000 * 119.99719 * 359.97438 * 21 20 18 44 44 H 1.09000 * 109.46228 * 181.76102 * 26 13 12 45 45 H 1.08992 * 109.46716 * 301.74362 * 26 13 12 46 46 H 1.08996 * 109.46968 * 59.99636 * 28 27 26 47 47 H 1.08996 * 109.46805 * 179.97438 * 28 27 26 48 48 H 1.09001 * 109.47082 * 299.99772 * 28 27 26 49 49 H 1.08993 * 109.47150 * 59.99921 * 29 27 26 50 50 H 1.08998 * 109.47159 * 180.02562 * 29 27 26 51 51 H 1.09005 * 109.46942 * 299.99847 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 9 1.6699 2.0680 -1.1954 6 6 3.5420 1.4443 0.1238 7 8 4.2064 0.6810 -0.5447 8 7 4.1468 2.2939 0.9774 9 6 5.6069 2.2961 1.0974 10 1 6.0526 2.0869 0.1248 11 6 6.0394 1.2237 2.1012 12 6 7.5599 1.2715 2.2679 13 7 7.9598 2.6022 2.7431 14 6 9.3966 2.6429 3.0467 15 6 9.6892 1.7363 4.2143 16 8 8.7895 1.1168 4.7415 17 7 10.9508 1.6131 4.6722 18 6 11.2169 0.7886 5.7348 19 1 10.4157 0.2376 6.2047 20 6 12.5176 0.6620 6.2071 21 7 13.4924 1.3328 5.6357 22 14 12.8802 -0.4618 7.6545 23 1 14.3325 -0.4202 7.9617 24 1 12.1108 -0.0061 8.8401 25 1 12.4857 -1.8521 7.3128 26 6 7.5972 3.6436 1.7734 27 6 6.0777 3.6665 1.5919 28 6 5.4081 3.9843 2.9305 29 6 5.7020 4.7368 0.5651 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.6154 2.9046 1.5119 36 1 5.5617 1.4117 3.0628 37 1 5.7437 0.2410 1.7339 38 1 8.0370 1.0699 1.3088 39 1 7.8696 0.5188 2.9928 40 1 9.6862 3.6634 3.2975 41 1 9.9614 2.3084 2.1765 42 1 11.6703 2.1082 4.2503 43 1 13.3040 1.9161 4.8838 44 1 7.9339 4.6136 2.1391 45 1 8.0738 3.4307 0.8166 46 1 5.7464 4.9583 3.2837 47 1 4.3261 4.0009 2.8005 48 1 5.6750 3.2202 3.6606 49 1 6.1781 4.5085 -0.3884 50 1 4.6198 4.7530 0.4366 51 1 6.0405 5.7117 0.9161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733875838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:10 Heat of formation + Delta-G solvation = -128.382266 kcal Electronic energy + Delta-G solvation = -31354.199421 eV Core-core repulsion = 27009.472395 eV Total energy + Delta-G solvation = -4344.727026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.23492 -40.72376 -39.17751 -38.09065 -35.49545 -34.36838 -34.21433 -33.49450 -31.66275 -30.98100 -28.37914 -27.48399 -27.39703 -26.11692 -24.41271 -23.25143 -22.19626 -21.57395 -20.75706 -19.54278 -19.01186 -17.93198 -17.89153 -17.18951 -16.43535 -16.25728 -15.89825 -15.44887 -15.13494 -15.06368 -14.66833 -14.47339 -14.28625 -14.14098 -14.05939 -13.75510 -13.61338 -13.34472 -13.30855 -13.16340 -12.69342 -12.57703 -12.32785 -12.26732 -12.06197 -11.82777 -11.52800 -11.45674 -11.41561 -11.30604 -11.23967 -11.18821 -10.96770 -10.87639 -10.60290 -10.43100 -10.20990 -9.96771 -9.85754 -9.52386 -9.24114 -8.49358 -8.04433 -7.90804 -6.75101 -3.88228 2.14571 2.66161 3.30821 3.34632 3.54812 3.83340 3.88947 4.01736 4.11849 4.22345 4.30040 4.38238 4.47660 4.65515 4.71039 4.88196 4.90526 5.00582 5.12141 5.20365 5.21953 5.24108 5.31559 5.39621 5.44620 5.47328 5.51196 5.57812 5.65698 5.66986 5.68868 5.74898 5.78381 5.79835 5.85369 5.91718 5.96771 6.02582 6.06091 6.15046 6.27735 6.45300 6.49786 7.09772 7.20204 7.33604 7.80175 7.81117 8.08217 8.60586 8.80647 9.47969 9.88747 10.68293 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.019341 B = 0.002205 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.321275 B =12696.703907 C =13592.025886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.142 4.142 3 C 0.083 3.917 4 H 0.099 0.901 5 F -0.191 7.191 6 C 0.490 3.510 7 O -0.519 6.519 8 N -0.712 5.712 9 C 0.152 3.848 10 H 0.085 0.915 11 C -0.122 4.122 12 C 0.055 3.945 13 N -0.512 5.512 14 C 0.046 3.954 15 C 0.447 3.553 16 O -0.571 6.571 17 N -0.577 5.577 18 C -0.380 4.380 19 H 0.099 0.901 20 C -0.010 4.010 21 N -0.901 5.901 22 Si 1.091 2.909 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.067 3.933 27 C -0.066 4.066 28 C -0.137 4.137 29 C -0.141 4.141 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.401 0.599 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.023 0.977 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.375 0.625 43 H 0.261 0.739 44 H 0.079 0.921 45 H 0.032 0.968 46 H 0.058 0.942 47 H 0.042 0.958 48 H 0.081 0.919 49 H 0.054 0.946 50 H 0.056 0.944 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.561 5.984 -11.285 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.044 3.956 4 H 0.116 0.884 5 F -0.172 7.172 6 C 0.274 3.726 7 O -0.394 6.394 8 N -0.364 5.364 9 C 0.048 3.952 10 H 0.103 0.897 11 C -0.160 4.160 12 C -0.073 4.073 13 N -0.236 5.236 14 C -0.085 4.085 15 C 0.233 3.767 16 O -0.454 6.454 17 N -0.215 5.215 18 C -0.510 4.510 19 H 0.117 0.883 20 C -0.213 4.213 21 N -0.541 5.541 22 Si 0.917 3.083 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.062 4.062 27 C -0.067 4.067 28 C -0.194 4.194 29 C -0.199 4.199 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.237 0.763 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.208 0.792 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.050 0.950 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.100 0.900 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.714 4.536 -10.008 23.448 hybrid contribution -0.573 1.215 -1.892 2.320 sum -21.287 5.751 -11.899 25.056 Atomic orbital electron populations 1.21774 0.94107 1.02737 1.02445 1.21998 0.97280 0.93471 1.05229 1.21651 0.92145 0.96391 0.85457 0.88359 1.92881 1.92065 1.83902 1.48337 1.20956 0.90257 0.81111 0.80317 1.90747 1.65988 1.38813 1.43859 1.46239 1.08420 1.39124 1.42639 1.21188 0.78733 0.95307 0.99940 0.89653 1.21958 0.96403 0.98203 0.99471 1.22217 0.94180 0.91962 0.98936 1.61509 1.15290 1.04112 1.42672 1.21830 0.88480 1.00768 0.97437 1.19651 0.83426 0.86634 0.87035 1.90484 1.44615 1.49562 1.60732 1.41951 1.07021 1.41732 1.30778 1.20510 0.97269 1.23662 1.09534 0.88348 1.26499 0.90926 1.00419 1.03425 1.70903 1.33495 1.26931 1.22726 0.83136 0.76310 0.74919 0.73937 1.20444 1.21019 1.21041 1.22118 0.93678 0.96296 0.94082 1.20811 0.95699 0.93710 0.96441 1.21841 0.97989 1.03106 0.96473 1.21855 1.01388 0.98274 0.98364 0.92308 0.91970 0.91628 0.89404 0.89617 0.76302 0.90267 0.91366 0.95847 0.87504 0.89398 0.93554 0.79207 0.92783 0.90243 0.94956 0.92340 0.93955 0.89991 0.92651 0.92493 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.83 37.16 0.37 -0.52 16 2 C -0.14 -1.07 5.41 -26.73 -0.14 -1.22 16 3 C 0.08 0.68 3.77 -27.88 -0.11 0.57 16 4 H 0.10 0.48 7.99 -51.93 -0.42 0.07 16 5 F -0.19 -1.94 16.75 2.25 0.04 -1.90 16 6 C 0.49 5.37 7.14 -10.98 -0.08 5.30 16 7 O -0.52 -7.83 16.27 5.56 0.09 -7.74 16 8 N -0.71 -6.67 4.37 -53.68 -0.23 -6.90 16 9 C 0.15 1.74 1.64 -67.81 -0.11 1.63 16 10 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 11 C -0.12 -1.66 5.32 -26.65 -0.14 -1.80 16 12 C 0.06 0.89 5.11 -3.83 -0.02 0.87 16 13 N -0.51 -7.98 3.68 -236.11 -0.87 -8.85 16 14 C 0.05 0.79 5.45 -4.97 -0.03 0.77 16 15 C 0.45 10.29 7.46 -10.99 -0.08 10.20 16 16 O -0.57 -14.97 13.90 5.55 0.08 -14.89 16 17 N -0.58 -14.32 5.28 -10.96 -0.06 -14.38 16 18 C -0.38 -10.59 9.68 -14.93 -0.14 -10.73 16 19 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 20 C -0.01 -0.28 5.50 -17.47 -0.10 -0.38 16 21 N -0.90 -25.17 13.68 55.50 0.76 -24.41 16 22 Si 1.09 24.21 29.92 -169.99 -5.09 19.12 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 C 0.07 0.81 4.18 -3.83 -0.02 0.79 16 27 C -0.07 -0.67 0.57 -154.43 -0.09 -0.76 16 28 C -0.14 -1.35 7.83 37.16 0.29 -1.06 16 29 C -0.14 -1.19 8.35 37.16 0.31 -0.88 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.38 7.94 -51.93 -0.41 -0.03 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.80 8.05 -51.92 -0.42 0.38 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.40 2.72 6.56 -40.82 -0.27 2.45 16 36 H 0.08 1.10 6.58 -51.93 -0.34 0.76 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.11 2.12 5.78 -51.93 -0.30 1.82 16 40 H 0.09 1.35 7.99 -51.93 -0.41 0.93 16 41 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 42 H 0.38 8.63 6.73 -40.82 -0.27 8.36 16 43 H 0.26 7.00 6.77 -40.82 -0.28 6.72 16 44 H 0.08 0.89 8.02 -51.93 -0.42 0.47 16 45 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.04 0.32 6.41 -51.93 -0.33 -0.02 16 48 H 0.08 1.04 6.01 -51.93 -0.31 0.73 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.43 7.63 -51.93 -0.40 0.04 16 51 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 401.00 15.07 6.04 6.04 Total: -1.00 -33.58 401.00 -7.70 -41.28 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -8.37 Total: 9.84 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.09 Total: 2.79 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.40 Total: -54.55 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.17 Total: -22.63 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.09 Total: 19.12 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.58 -7.70 -41.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733875838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.101 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds