Wall clock time and date at job start Wed Apr 1 2020 02:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 H 1.08999 * 109.46957 * 55.00316 * 3 2 1 5 5 F 1.39902 * 109.47359 * 295.00162 * 3 2 1 6 6 C 1.50707 * 109.47090 * 175.00281 * 3 2 1 7 7 O 1.21275 * 119.99872 * 44.99817 * 6 3 2 8 8 N 1.34772 * 119.99778 * 225.00726 * 6 3 2 9 9 C 1.46503 * 120.00003 * 180.02562 * 8 6 3 10 10 H 1.09006 * 109.52253 * 34.86564 * 9 8 6 11 11 C 1.53121 * 109.52110 * 274.68082 * 9 8 6 12 12 C 1.53038 * 109.27911 * 182.43839 * 11 9 8 13 13 N 1.46854 * 109.52021 * 59.17679 * 12 11 9 14 14 C 1.46905 * 110.99603 * 174.16099 * 13 12 11 15 15 C 1.50696 * 109.46937 * 294.20933 * 14 13 12 16 16 O 1.21292 * 120.00259 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99761 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99976 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99986 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99677 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00253 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47399 * 299.99614 * 22 20 18 25 25 H 1.48498 * 109.47295 * 60.00221 * 22 20 18 26 26 C 1.46845 * 111.19752 * 298.25390 * 13 12 11 27 27 C 1.53040 * 109.52074 * 61.74695 * 26 13 12 28 28 C 1.53004 * 109.50338 * 60.75993 * 27 26 13 29 29 C 1.53000 * 109.50311 * 180.87688 * 27 26 13 30 30 H 1.08995 * 109.46642 * 299.99866 * 1 2 3 31 31 H 1.09003 * 109.46819 * 59.99621 * 1 2 3 32 32 H 1.08992 * 109.47328 * 179.97438 * 1 2 3 33 33 H 1.09010 * 109.46874 * 240.00578 * 2 1 3 34 34 H 1.08994 * 109.47398 * 120.00212 * 2 1 3 35 35 H 0.97004 * 120.00383 * 359.97438 * 8 6 3 36 36 H 1.09004 * 109.49648 * 302.37832 * 11 9 8 37 37 H 1.08993 * 109.50595 * 62.45439 * 11 9 8 38 38 H 1.09001 * 109.46247 * 299.16263 * 12 11 9 39 39 H 1.08992 * 109.46008 * 179.18919 * 12 11 9 40 40 H 1.09000 * 109.47082 * 174.21018 * 14 13 12 41 41 H 1.09004 * 109.47143 * 54.20973 * 14 13 12 42 42 H 0.96999 * 120.00043 * 0.02562 * 17 15 14 43 43 H 0.97000 * 119.99719 * 359.97438 * 21 20 18 44 44 H 1.09000 * 109.46228 * 181.76102 * 26 13 12 45 45 H 1.08992 * 109.46716 * 301.74362 * 26 13 12 46 46 H 1.08996 * 109.46968 * 59.99636 * 28 27 26 47 47 H 1.08996 * 109.46805 * 179.97438 * 28 27 26 48 48 H 1.09001 * 109.47082 * 299.99772 * 28 27 26 49 49 H 1.08993 * 109.47150 * 59.99921 * 29 27 26 50 50 H 1.08998 * 109.47159 * 180.02562 * 29 27 26 51 51 H 1.09005 * 109.46942 * 299.99847 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 9 1.6699 2.0680 -1.1954 6 6 3.5420 1.4443 0.1238 7 8 4.2064 0.6810 -0.5447 8 7 4.1468 2.2939 0.9774 9 6 5.6069 2.2961 1.0974 10 1 6.0526 2.0869 0.1248 11 6 6.0394 1.2237 2.1012 12 6 7.5599 1.2715 2.2679 13 7 7.9598 2.6022 2.7431 14 6 9.3966 2.6429 3.0467 15 6 9.6892 1.7363 4.2143 16 8 8.7895 1.1168 4.7415 17 7 10.9508 1.6131 4.6722 18 6 11.2169 0.7886 5.7348 19 1 10.4157 0.2376 6.2047 20 6 12.5176 0.6620 6.2071 21 7 13.4924 1.3328 5.6357 22 14 12.8802 -0.4618 7.6545 23 1 14.3325 -0.4202 7.9617 24 1 12.1108 -0.0061 8.8401 25 1 12.4857 -1.8521 7.3128 26 6 7.5972 3.6436 1.7734 27 6 6.0777 3.6665 1.5919 28 6 5.4081 3.9843 2.9305 29 6 5.7020 4.7368 0.5651 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.6154 2.9046 1.5119 36 1 5.5617 1.4117 3.0628 37 1 5.7437 0.2410 1.7339 38 1 8.0370 1.0699 1.3088 39 1 7.8696 0.5188 2.9928 40 1 9.6862 3.6634 3.2975 41 1 9.9614 2.3084 2.1765 42 1 11.6703 2.1082 4.2503 43 1 13.3040 1.9161 4.8838 44 1 7.9339 4.6136 2.1391 45 1 8.0738 3.4307 0.8166 46 1 5.7464 4.9583 3.2837 47 1 4.3261 4.0009 2.8005 48 1 5.6750 3.2202 3.6606 49 1 6.1781 4.5085 -0.3884 50 1 4.6198 4.7530 0.4366 51 1 6.0405 5.7117 0.9161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733875838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:08 Heat of formation + Delta-G solvation = -151.895509 kcal Electronic energy + Delta-G solvation = -31355.219031 eV Core-core repulsion = 27009.472395 eV Total energy + Delta-G solvation = -4345.746637 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.95846 -41.72614 -40.50611 -39.58840 -36.83182 -36.05051 -34.98904 -34.45748 -33.23272 -32.57708 -29.32951 -28.60483 -28.16446 -27.18460 -26.18293 -24.37799 -22.92965 -22.79147 -21.60646 -21.31173 -19.93818 -19.92661 -18.81652 -18.09478 -17.81643 -17.29824 -17.01889 -16.56470 -16.42595 -16.19000 -15.89781 -15.76824 -15.52943 -15.36552 -15.11568 -15.03113 -14.72291 -14.43369 -14.33457 -14.03446 -13.94089 -13.34995 -13.32035 -13.28313 -12.94040 -12.91452 -12.84365 -12.73392 -12.63117 -12.48007 -12.32811 -12.05163 -11.92505 -11.88475 -11.87070 -11.78632 -11.64163 -11.44388 -11.40556 -10.87752 -10.36654 -10.16519 -10.06537 -9.25777 -8.91212 -6.04744 1.27469 1.52886 1.54141 1.82035 1.84386 2.02473 2.38660 2.65943 3.17048 3.23055 3.31480 3.44511 3.53921 3.64481 3.71716 3.80284 3.88387 4.02721 4.14860 4.20448 4.29329 4.31802 4.35903 4.39486 4.40195 4.48793 4.59307 4.63882 4.69636 4.71523 4.80601 4.82648 4.97829 5.00739 5.02432 5.07434 5.10619 5.12169 5.19830 5.31860 5.32609 5.34336 5.59669 5.61084 5.91251 5.98318 6.14811 6.32496 6.59654 6.77276 6.99604 7.46449 7.95658 8.56490 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.019341 B = 0.002205 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.321275 B =12696.703907 C =13592.025886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.086 3.914 4 H 0.142 0.858 5 F -0.201 7.201 6 C 0.487 3.513 7 O -0.567 6.567 8 N -0.697 5.697 9 C 0.161 3.839 10 H 0.067 0.933 11 C -0.111 4.111 12 C 0.060 3.940 13 N -0.520 5.520 14 C 0.057 3.943 15 C 0.446 3.554 16 O -0.605 6.605 17 N -0.590 5.590 18 C -0.406 4.406 19 H 0.073 0.927 20 C -0.045 4.045 21 N -0.918 5.918 22 Si 1.133 2.867 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.274 1.274 26 C 0.064 3.936 27 C -0.058 4.058 28 C -0.134 4.134 29 C -0.135 4.135 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.417 0.583 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.023 0.977 39 H 0.063 0.937 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.383 0.617 43 H 0.259 0.741 44 H 0.097 0.903 45 H 0.037 0.963 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.050 0.950 50 H 0.069 0.931 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.274 7.976 -11.422 27.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.048 3.952 4 H 0.159 0.841 5 F -0.182 7.182 6 C 0.272 3.728 7 O -0.445 6.445 8 N -0.349 5.349 9 C 0.056 3.944 10 H 0.085 0.915 11 C -0.150 4.150 12 C -0.069 4.069 13 N -0.245 5.245 14 C -0.074 4.074 15 C 0.234 3.766 16 O -0.490 6.490 17 N -0.229 5.229 18 C -0.535 4.535 19 H 0.091 0.909 20 C -0.243 4.243 21 N -0.558 5.558 22 Si 0.953 3.047 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.200 1.200 26 C -0.064 4.064 27 C -0.059 4.059 28 C -0.191 4.191 29 C -0.193 4.193 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.256 0.744 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.217 0.783 43 H 0.070 0.930 44 H 0.115 0.885 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.460 6.580 -10.157 25.513 hybrid contribution -0.099 0.589 -1.893 1.985 sum -22.559 7.170 -12.049 26.561 Atomic orbital electron populations 1.21759 0.92405 1.03354 1.03099 1.22011 0.98678 0.93084 1.04344 1.21828 0.89903 0.97244 0.86274 0.84056 1.92862 1.91919 1.84088 1.49355 1.21566 0.91531 0.80213 0.79517 1.90731 1.67322 1.40703 1.45747 1.46075 1.07615 1.38917 1.42327 1.20940 0.79947 0.95391 0.98127 0.91464 1.21817 0.94620 0.98589 1.00009 1.22021 0.95900 0.91561 0.97369 1.61491 1.14113 1.04477 1.44394 1.21737 0.90014 1.00493 0.95203 1.20744 0.82274 0.86033 0.87540 1.90469 1.45589 1.50850 1.62129 1.42011 1.08065 1.42084 1.30760 1.20480 0.97072 1.24889 1.11043 0.90907 1.27793 0.90459 1.00924 1.05091 1.70971 1.33828 1.27704 1.23272 0.82638 0.76526 0.73849 0.71714 1.19820 1.19743 1.19984 1.22293 0.95172 0.95581 0.93354 1.20778 0.94361 0.93358 0.97395 1.21801 0.99792 1.02349 0.95160 1.21815 1.02240 0.97973 0.97276 0.90512 0.92382 0.91129 0.91697 0.89249 0.74357 0.90556 0.92689 0.95890 0.91845 0.86654 0.91950 0.78264 0.93035 0.88461 0.94477 0.91567 0.91204 0.93034 0.93132 0.91204 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.83 71.98 0.71 -0.72 16 2 C -0.14 -2.02 5.41 30.60 0.17 -1.85 16 3 C 0.09 1.23 3.77 29.85 0.11 1.34 16 4 H 0.14 0.81 7.99 -2.39 -0.02 0.79 16 5 F -0.20 -3.73 16.75 44.97 0.75 -2.98 16 6 C 0.49 10.14 7.14 87.66 0.63 10.77 16 7 O -0.57 -17.34 16.27 -3.02 -0.05 -17.39 16 8 N -0.70 -11.69 4.37 -442.15 -1.93 -13.62 16 9 C 0.16 3.51 1.64 45.07 0.07 3.59 16 10 H 0.07 1.77 7.58 -2.38 -0.02 1.75 16 11 C -0.11 -3.09 5.32 30.65 0.16 -2.93 16 12 C 0.06 2.00 5.11 86.32 0.44 2.44 16 13 N -0.52 -15.92 3.68 -900.91 -3.32 -19.24 16 14 C 0.06 1.90 5.45 85.55 0.47 2.37 16 15 C 0.45 20.96 7.46 87.66 0.65 21.61 16 16 O -0.61 -32.95 13.90 -3.07 -0.04 -32.99 16 17 N -0.59 -29.90 5.28 -306.98 -1.62 -31.52 16 18 C -0.41 -23.17 9.68 84.04 0.81 -22.35 16 19 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 20 C -0.04 -2.44 5.50 84.93 0.47 -1.97 16 21 N -0.92 -51.47 13.68 21.66 0.30 -51.17 16 22 Si 1.13 48.81 29.92 68.60 2.05 50.86 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 C 0.06 1.40 4.18 86.33 0.36 1.76 16 27 C -0.06 -1.04 0.57 -52.13 -0.03 -1.07 16 28 C -0.13 -2.27 7.83 71.98 0.56 -1.71 16 29 C -0.14 -1.80 8.35 71.98 0.60 -1.20 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.61 7.94 -2.39 -0.02 0.60 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 1.21 8.05 -2.38 -0.02 1.19 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.42 4.23 6.56 -92.71 -0.61 3.62 16 36 H 0.08 2.16 6.58 -2.38 -0.02 2.14 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 2.68 5.78 -2.39 -0.01 2.66 16 40 H 0.12 3.28 7.99 -2.39 -0.02 3.26 16 41 H 0.06 1.93 8.12 -2.38 -0.02 1.91 16 42 H 0.38 17.89 6.73 -92.71 -0.62 17.27 16 43 H 0.26 14.01 6.77 -92.71 -0.63 13.39 16 44 H 0.10 1.83 8.02 -2.39 -0.02 1.81 16 45 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 0.78 6.41 -2.39 -0.02 0.76 16 48 H 0.05 1.23 6.01 -2.39 -0.01 1.21 16 49 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 0.77 7.63 -2.39 -0.02 0.76 16 51 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -76.41 401.00 2.18 -74.24 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.15 Total: 33.75 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 6.18 Total: 10.07 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -6.57 Total: -115.56 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -0.09 Total: -50.39 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.75 Total: -2.98 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.05 Total: 50.86 kcal Total: -76.41 2.18 -74.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733875838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.659 kcal (2) G-P(sol) polarization free energy of solvation -76.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds