Wall clock time and date at job start Wed Apr 1 2020 01:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 N 1.46905 * 109.46684 * 174.99707 * 4 2 1 6 6 C 1.46954 * 110.99861 * 293.79643 * 5 4 2 7 7 C 1.53058 * 109.36139 * 176.81180 * 6 5 4 8 8 N 1.46957 * 109.36270 * 58.40531 * 7 6 5 9 9 C 1.46899 * 111.00226 * 176.80899 * 8 7 6 10 10 C 1.52995 * 109.47279 * 293.80068 * 9 8 7 11 11 C 1.53001 * 109.47150 * 179.97438 * 10 9 8 12 12 N 1.46504 * 109.46670 * 179.97438 * 11 10 9 13 13 C 1.34782 * 119.99654 * 180.02562 * 12 11 10 14 14 O 1.21285 * 119.99679 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00110 * 180.02562 * 13 12 11 16 16 S 1.80994 * 109.47209 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99905 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00370 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99954 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00030 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99991 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47004 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47183 * 120.00073 * 21 19 17 24 24 H 1.48499 * 109.47130 * 239.99859 * 21 19 17 25 25 C 1.46958 * 110.87886 * 300.67768 * 8 7 6 26 26 C 1.46957 * 110.99740 * 170.00084 * 5 4 2 27 27 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 28 28 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 29 29 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 31 31 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 32 32 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 33 33 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 35 35 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 36 36 H 1.08996 * 109.49296 * 296.77672 * 6 5 4 37 37 H 1.08999 * 109.48718 * 56.85111 * 6 5 4 38 38 H 1.08999 * 109.49102 * 298.43546 * 7 6 5 39 39 H 1.08999 * 109.48763 * 178.37088 * 7 6 5 40 40 H 1.09006 * 109.46778 * 53.79527 * 9 8 7 41 41 H 1.09000 * 109.47324 * 173.79464 * 9 8 7 42 42 H 1.09000 * 109.46923 * 299.99909 * 10 9 8 43 43 H 1.09000 * 109.47436 * 59.99464 * 10 9 8 44 44 H 1.09000 * 109.46629 * 299.99633 * 11 10 9 45 45 H 1.08998 * 109.47293 * 60.00082 * 11 10 9 46 46 H 0.97001 * 120.00558 * 359.97438 * 12 11 10 47 47 H 1.09000 * 109.46929 * 300.00034 * 15 13 12 48 48 H 1.08998 * 109.46974 * 59.99778 * 15 13 12 49 49 H 0.97002 * 119.99799 * 180.02562 * 20 19 17 50 50 H 1.08996 * 109.48921 * 299.35044 * 25 8 7 51 51 H 1.09000 * 109.49126 * 179.28821 * 25 8 7 52 52 H 1.09003 * 109.48825 * 303.15939 * 26 5 4 53 53 H 1.08999 * 109.49094 * 63.21977 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5040 -0.8268 1.1905 6 6 3.9249 -1.7031 0.0885 7 6 5.4534 -1.7233 0.0117 8 7 5.9994 -2.1934 1.2925 9 6 7.4634 -2.2990 1.2338 10 6 7.8562 -3.4011 0.2480 11 6 9.3810 -3.5106 0.1864 12 7 9.7569 -4.5665 -0.7571 13 6 11.0578 -4.8437 -0.9748 14 8 11.9171 -4.2187 -0.3900 15 6 11.4447 -5.9294 -1.9457 16 16 13.2485 -6.0590 -2.0186 17 6 13.4144 -7.3635 -3.1914 18 1 12.5343 -7.8170 -3.6227 19 6 14.6762 -7.8081 -3.5610 20 7 15.7490 -7.2550 -3.0357 21 14 14.8521 -9.1906 -4.8049 22 1 13.5051 -9.6376 -5.2419 23 1 15.6183 -8.7043 -5.9804 24 1 15.5728 -10.3292 -4.1810 25 6 5.5784 -1.3171 2.3946 26 6 4.0499 -1.2969 2.4713 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.7515 -0.1583 2.1370 35 1 1.6052 -1.7198 1.2952 36 1 3.5564 -2.7134 0.2660 37 1 3.5186 -1.3272 -0.8505 38 1 5.8206 -0.7176 -0.1930 39 1 5.7686 -2.3953 -0.7865 40 1 7.8832 -1.3490 0.9027 41 1 7.8502 -2.5418 2.2235 42 1 7.4364 -4.3511 0.5791 43 1 7.4694 -3.1583 -0.7417 44 1 9.8003 -2.5606 -0.1449 45 1 9.7682 -3.7534 1.1760 46 1 9.0697 -5.0666 -1.2245 47 1 11.0248 -6.8793 -1.6148 48 1 11.0580 -5.6864 -2.9354 49 1 16.6308 -7.5655 -3.2943 50 1 5.9470 -0.3069 2.2170 51 1 5.9846 -1.6929 3.3336 52 1 3.7347 -0.6249 3.2696 53 1 3.6828 -2.3026 2.6760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752339024.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:58 Heat of formation + Delta-G solvation = -69.096943 kcal Electronic energy + Delta-G solvation = -26884.670278 eV Core-core repulsion = 23108.727233 eV Total energy + Delta-G solvation = -3775.943045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.69316 -40.40091 -38.04876 -36.43193 -34.96468 -34.58003 -32.72225 -31.89567 -30.65610 -28.51007 -27.93290 -27.65561 -25.74060 -24.78895 -24.15144 -22.27136 -21.59470 -20.95853 -20.52517 -19.80598 -17.76009 -17.69758 -17.00585 -16.96412 -16.87280 -16.36950 -16.10958 -15.87963 -15.84217 -15.60796 -15.49435 -15.23214 -14.83386 -14.66227 -14.40875 -14.24804 -13.79639 -13.55135 -13.33897 -13.19358 -13.15615 -13.04091 -12.90625 -12.88725 -12.62463 -12.56924 -12.48911 -12.22812 -12.11734 -11.96145 -11.80218 -11.70521 -11.62232 -11.44378 -11.20124 -11.15486 -10.94958 -10.26844 -10.11293 -9.40463 -9.21677 -8.66492 -8.34483 -6.12575 1.27674 1.41908 1.47787 1.58953 1.61741 2.25202 2.29231 2.87817 2.93803 2.99900 3.33011 3.81088 3.86663 3.92161 3.96828 4.03176 4.09886 4.16935 4.21430 4.27016 4.30788 4.37656 4.40566 4.46828 4.51317 4.52149 4.58079 4.64268 4.69356 4.73227 4.79382 4.82569 4.85156 4.87726 4.93052 5.04199 5.04594 5.09426 5.14471 5.16203 5.22009 5.29898 5.42613 5.45605 5.45878 5.52015 5.97553 5.99943 6.17010 6.19345 6.20508 6.52036 7.07040 7.25403 8.75095 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025706 B = 0.001372 C = 0.001328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.964568 B =20405.862093 C =21077.371163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.133 4.133 4 C 0.063 3.937 5 N -0.545 5.545 6 C 0.059 3.941 7 C 0.055 3.945 8 N -0.544 5.544 9 C 0.062 3.938 10 C -0.110 4.110 11 C 0.123 3.877 12 N -0.712 5.712 13 C 0.532 3.468 14 O -0.568 6.568 15 C -0.130 4.130 16 S -0.154 6.154 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.058 3.942 26 C 0.061 3.939 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.035 0.965 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.088 0.912 40 H 0.035 0.965 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.417 0.583 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.271 0.729 50 H 0.035 0.965 51 H 0.087 0.913 52 H 0.088 0.912 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.520 13.807 8.398 38.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.191 4.191 4 C -0.065 4.065 5 N -0.270 5.270 6 C -0.069 4.069 7 C -0.073 4.073 8 N -0.269 5.269 9 C -0.067 4.067 10 C -0.148 4.148 11 C -0.001 4.001 12 N -0.366 5.366 13 C 0.318 3.682 14 O -0.446 6.446 15 C -0.281 4.281 16 S 0.074 5.926 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.070 4.070 26 C -0.067 4.067 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.052 0.948 39 H 0.106 0.894 40 H 0.053 0.947 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.254 0.746 47 H 0.129 0.871 48 H 0.129 0.871 49 H 0.080 0.920 50 H 0.054 0.946 51 H 0.105 0.895 52 H 0.106 0.894 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -32.954 14.872 9.406 37.358 hybrid contribution -0.565 -1.535 -1.374 2.136 sum -33.519 13.337 8.032 36.959 Atomic orbital electron populations 1.21798 0.94369 1.01867 1.02250 1.21123 0.95723 0.96795 0.97437 1.21661 1.01148 0.95188 1.01064 1.22173 0.86306 0.98854 0.99140 1.62172 1.10467 1.50205 1.04117 1.22167 0.94674 0.94761 0.95286 1.22233 0.94441 0.98781 0.91881 1.62158 1.09738 1.50511 1.04485 1.21930 0.87114 0.97322 1.00292 1.21621 0.91859 1.00590 1.00703 1.21300 0.96116 0.90108 0.92599 1.45739 1.06128 1.38925 1.45851 1.20091 0.83054 0.83285 0.81810 1.90691 1.50849 1.52320 1.50777 1.23374 1.01624 1.00931 1.02146 1.85587 1.00250 1.48784 1.58021 1.23246 0.96022 1.21584 1.28521 0.89864 1.26129 0.94265 0.99970 0.98741 1.70194 0.98714 1.42507 1.43422 0.84898 0.78929 0.76913 0.77153 1.17992 1.19934 1.19945 1.22164 0.95215 0.94874 0.94747 1.22130 0.94008 0.98921 0.91671 0.92341 0.92192 0.92661 0.91544 0.93129 0.93060 0.92913 0.90481 0.95052 0.94700 0.89555 0.94824 0.89352 0.94663 0.90054 0.89774 0.90252 0.92656 0.92388 0.74607 0.87143 0.87140 0.91995 0.94633 0.89466 0.89377 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 71.98 0.66 -0.43 16 2 C -0.09 -0.86 2.85 -10.79 -0.03 -0.89 16 3 C -0.13 -1.38 9.08 71.98 0.65 -0.72 16 4 C 0.06 0.64 4.35 86.30 0.38 1.02 16 5 N -0.54 -6.68 4.16 -895.70 -3.73 -10.41 16 6 C 0.06 0.73 5.42 86.31 0.47 1.20 16 7 C 0.05 0.72 5.41 86.31 0.47 1.19 16 8 N -0.54 -7.64 4.71 -895.71 -4.22 -11.86 16 9 C 0.06 0.87 4.96 86.30 0.43 1.30 16 10 C -0.11 -1.56 5.26 30.59 0.16 -1.40 16 11 C 0.12 2.64 5.67 86.38 0.49 3.13 16 12 N -0.71 -17.67 5.56 -463.04 -2.57 -20.24 16 13 C 0.53 19.70 7.85 87.66 0.69 20.39 16 14 O -0.57 -26.65 15.86 -3.04 -0.05 -26.69 16 15 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 16 S -0.15 -8.58 20.57 -56.49 -1.16 -9.75 16 17 C -0.55 -31.26 9.50 67.96 0.65 -30.62 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.78 5.49 84.86 0.47 1.24 16 20 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 21 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 C 0.06 0.74 5.61 86.31 0.48 1.23 16 26 C 0.06 0.71 5.61 86.31 0.48 1.20 16 27 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.68 6.28 -2.39 -0.01 0.67 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.69 7.75 -2.39 -0.02 0.67 16 34 H 0.08 0.74 8.03 -2.39 -0.02 0.72 16 35 H 0.03 0.34 8.12 -2.39 -0.02 0.32 16 36 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.09 0.96 6.25 -2.39 -0.01 0.94 16 38 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.09 1.05 6.34 -2.39 -0.02 1.03 16 40 H 0.04 0.54 8.12 -2.38 -0.02 0.52 16 41 H 0.08 1.13 8.03 -2.39 -0.02 1.11 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.00 6.49 -2.39 -0.02 0.99 16 44 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.42 7.34 8.47 -92.71 -0.79 6.55 16 47 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 48 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 49 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 50 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.09 0.98 8.07 -2.39 -0.02 0.96 16 52 H 0.09 0.85 8.07 -2.39 -0.02 0.83 16 53 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -75.14 427.48 -2.46 -77.60 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.07 Total: 18.48 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 6.88 Total: -6.85 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -10.23 Total: -98.45 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Total: -75.14 -2.46 -77.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752339024.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.502 kcal (2) G-P(sol) polarization free energy of solvation -75.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds