Wall clock time and date at job start Wed Apr 1 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46892 * 2 1 4 4 N 1.46506 * 109.46976 * 179.97438 * 3 2 1 5 5 C 1.36931 * 119.99546 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00558 * 359.97438 * 5 4 3 7 7 C 1.38816 * 119.99599 * 179.97438 * 5 4 3 8 8 N 1.31623 * 120.00226 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00068 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46827 * 90.00116 * 9 7 5 11 11 H 1.48500 * 109.47153 * 210.00302 * 9 7 5 12 12 H 1.48499 * 109.46940 * 330.00287 * 9 7 5 13 13 N 1.46496 * 109.46878 * 119.99542 * 2 1 3 14 14 C 1.34775 * 120.00643 * 298.25179 * 13 2 1 15 15 O 1.21288 * 119.99733 * 5.07199 * 14 13 2 16 16 C 1.50699 * 120.00356 * 185.07820 * 14 13 2 17 17 H 1.08998 * 109.25670 * 60.00031 * 16 14 13 18 18 C 1.52731 * 109.25640 * 179.47730 * 16 14 13 19 19 C 1.53323 * 108.42292 * 171.55230 * 18 16 14 20 20 C 1.52769 * 108.35111 * 290.10190 * 19 18 16 21 21 C 1.50486 * 110.55982 * 50.80540 * 20 19 18 22 22 C 1.39189 * 117.97529 * 162.70262 * 21 20 19 23 23 C 1.38403 * 118.87266 * 179.79080 * 22 21 20 24 24 C 1.38244 * 118.84152 * 359.97438 * 23 22 21 25 25 N 1.31506 * 120.61041 * 0.13387 * 24 23 22 26 26 C 1.32758 * 122.38782 * 359.90818 * 25 24 23 27 27 C 1.52999 * 109.47430 * 240.00025 * 2 1 3 28 28 C 1.53001 * 117.49656 * 303.40244 * 27 2 1 29 29 C 1.53002 * 60.02992 * 107.47632 * 28 27 2 30 30 H 1.08999 * 109.46829 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47356 * 300.00357 * 1 2 3 32 32 H 1.09007 * 109.46861 * 60.00258 * 1 2 3 33 33 H 1.08999 * 109.46853 * 299.99780 * 3 2 1 34 34 H 1.09003 * 109.46921 * 59.99800 * 3 2 1 35 35 H 0.96996 * 120.00023 * 0.02562 * 4 3 2 36 36 H 0.97000 * 120.00333 * 180.02562 * 8 7 5 37 37 H 0.97003 * 120.00175 * 118.25512 * 13 2 1 38 38 H 1.09003 * 109.67184 * 291.28968 * 18 16 14 39 39 H 1.09005 * 109.67010 * 51.81908 * 18 16 14 40 40 H 1.08996 * 109.69050 * 49.81889 * 19 18 16 41 41 H 1.09010 * 109.68741 * 170.38913 * 19 18 16 42 42 H 1.08998 * 109.25992 * 171.08965 * 20 19 18 43 43 H 1.09003 * 109.26044 * 290.52718 * 20 19 18 44 44 H 1.08004 * 120.56522 * 359.78146 * 22 21 20 45 45 H 1.07997 * 120.58373 * 179.97438 * 23 22 21 46 46 H 1.08002 * 119.69527 * 180.10689 * 24 23 22 47 47 H 1.09001 * 115.56023 * 157.71488 * 27 2 1 48 48 H 1.09000 * 117.49611 * 214.98243 * 28 27 2 49 49 H 1.08994 * 117.50036 * 359.97438 * 28 27 2 50 50 H 1.09003 * 117.49697 * 107.49824 * 29 28 27 51 51 H 1.08993 * 117.50003 * 252.51825 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1896 2.6285 0.0002 6 1 3.6496 3.5638 -0.0010 7 6 5.5777 2.6286 0.0013 8 7 6.2359 1.4887 0.0023 9 14 6.5117 4.2463 0.0000 10 1 6.7581 4.6767 1.3998 11 1 7.8098 4.0679 -0.6988 12 1 5.7097 5.2804 -0.7019 13 7 2.0183 -0.6905 1.1962 14 6 1.7220 -0.2099 2.4200 15 8 0.9761 0.7397 2.5343 16 6 2.3177 -0.8521 3.6463 17 1 3.4046 -0.7904 3.5924 18 6 1.8321 -0.1100 4.8898 19 6 2.2722 -0.8997 6.1281 20 6 1.4599 -2.1922 6.1881 21 6 1.5153 -2.9130 4.8682 22 6 1.1536 -4.2568 4.8425 23 6 1.1936 -4.9367 3.6377 24 6 1.5910 -4.2571 2.5013 25 7 1.9279 -2.9874 2.5638 26 6 1.9038 -2.3004 3.6995 27 6 2.0401 -0.7212 -1.2492 28 6 1.5712 -2.1600 -1.4752 29 6 1.0235 -1.0311 -2.3508 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.9900 0.6026 0.0006 36 1 7.2059 1.4887 0.0034 37 1 2.5549 -1.4937 1.1075 38 1 2.2700 0.8878 4.9160 39 1 0.7448 -0.0338 4.8704 40 1 3.3336 -1.1362 6.0547 41 1 2.0883 -0.3084 7.0252 42 1 1.8668 -2.8367 6.9672 43 1 0.4227 -1.9543 6.4245 44 1 0.8471 -4.7605 5.7474 45 1 0.9192 -5.9800 3.5860 46 1 1.6256 -4.7737 1.5535 47 1 3.0547 -0.4683 -1.5569 48 1 2.2773 -2.8536 -1.9316 49 1 0.8997 -2.5928 -0.7337 50 1 1.3693 -0.9821 -3.3834 51 1 -0.0082 -0.7211 -2.1852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753523821.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:12 Heat of formation + Delta-G solvation = 33.649673 kcal Electronic energy + Delta-G solvation = -31801.303333 eV Core-core repulsion = 27894.371764 eV Total energy + Delta-G solvation = -3906.931569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.05031 -39.61950 -37.80281 -36.29896 -34.49905 -33.64833 -33.08874 -31.07183 -30.51521 -30.07631 -29.18197 -25.76453 -24.79396 -23.66342 -23.34096 -22.85598 -22.20875 -21.91402 -20.31208 -19.50703 -18.50966 -17.22237 -17.04853 -16.65490 -16.52526 -15.77500 -15.45110 -15.06370 -14.57621 -14.39814 -14.36134 -14.05470 -13.76800 -13.60339 -13.42684 -13.15280 -13.00031 -12.74735 -12.64442 -12.38336 -12.12341 -11.94437 -11.91973 -11.70049 -11.31384 -11.12880 -10.92705 -10.91361 -10.74312 -10.67632 -10.65727 -10.61330 -10.03959 -10.00461 -9.83697 -9.68187 -9.57539 -9.49650 -9.19029 -8.81061 -8.62489 -8.24358 -6.74297 -5.65399 -2.90991 0.96609 1.11761 3.20536 3.50247 3.52144 3.55529 3.57290 3.75005 4.12224 4.27931 4.45167 4.59327 4.69921 4.70473 4.80119 4.88528 4.97283 5.02852 5.08668 5.24748 5.30338 5.33518 5.37129 5.48461 5.50797 5.55482 5.63054 5.64991 5.68661 5.70669 5.81237 5.84096 5.90393 5.97747 6.02581 6.10398 6.14060 6.22212 6.22694 6.36067 6.37511 6.39878 6.42244 6.55639 6.60445 6.77652 6.86470 7.08266 7.35348 7.82319 7.86676 8.29794 8.54355 8.93011 9.65565 10.25522 10.61872 11.57809 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010083 B = 0.004163 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.235783 B = 6724.198820 C = 8213.932789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.201 3.799 3 C 0.143 3.857 4 N -0.725 5.725 5 C -0.227 4.227 6 H 0.068 0.932 7 C -0.017 4.017 8 N -0.937 5.937 9 Si 0.903 3.097 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.283 1.283 13 N -0.691 5.691 14 C 0.538 3.462 15 O -0.545 6.545 16 C -0.060 4.060 17 H 0.117 0.883 18 C -0.098 4.098 19 C -0.122 4.122 20 C -0.077 4.077 21 C -0.121 4.121 22 C -0.078 4.078 23 C -0.178 4.178 24 C 0.106 3.894 25 N -0.480 5.480 26 C 0.146 3.854 27 C -0.147 4.147 28 C -0.178 4.178 29 C -0.176 4.176 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.045 0.955 35 H 0.382 0.618 36 H 0.252 0.748 37 H 0.408 0.592 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.156 0.844 47 H 0.120 0.880 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.091 0.909 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.316 -15.685 9.056 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.115 3.885 3 C 0.015 3.985 4 N -0.370 5.370 5 C -0.359 4.359 6 H 0.086 0.914 7 C -0.212 4.212 8 N -0.586 5.586 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.220 1.220 12 H -0.209 1.209 13 N -0.343 5.343 14 C 0.323 3.677 15 O -0.423 6.423 16 C -0.082 4.082 17 H 0.134 0.866 18 C -0.136 4.136 19 C -0.160 4.160 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.104 4.104 23 C -0.198 4.198 24 C -0.053 4.053 25 N -0.189 5.189 26 C 0.011 3.989 27 C -0.165 4.165 28 C -0.215 4.215 29 C -0.214 4.214 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.216 0.784 36 H 0.062 0.938 37 H 0.247 0.753 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.173 0.827 47 H 0.138 0.862 48 H 0.108 0.892 49 H 0.110 0.890 50 H 0.109 0.891 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.532 -14.392 8.343 20.827 hybrid contribution 0.920 -0.438 0.565 1.166 sum -11.611 -14.830 8.909 20.835 Atomic orbital electron populations 1.22263 0.95219 1.01279 1.03090 1.19974 0.92830 0.92994 0.82674 1.21062 0.86361 0.91969 0.99099 1.42258 0.99261 1.06145 1.89315 1.19252 0.89012 0.86270 1.41318 0.91419 1.24661 0.96275 0.96568 1.03705 1.69657 1.06518 1.23707 1.58759 0.86226 0.79420 0.83409 0.77421 1.21935 1.21965 1.20892 1.45979 1.54359 1.29766 1.04172 1.19771 0.80704 0.83042 0.84173 1.90602 1.36846 1.28306 1.86537 1.20269 1.02864 0.89356 0.95733 0.86571 1.21383 1.02325 0.98916 0.91010 1.21619 1.00160 0.95549 0.98644 1.20449 1.01360 0.96588 0.93055 1.20406 1.00661 0.94722 0.96457 1.21560 0.96777 0.93572 0.98460 1.22085 1.02432 1.01380 0.93856 1.22651 0.94242 0.89939 0.98484 1.67369 1.14393 1.08888 1.28241 1.20683 0.95066 0.94919 0.88221 1.22549 1.00491 0.96955 0.96524 1.22884 1.03865 0.91608 1.03145 1.23052 0.99170 1.03309 0.95837 0.93259 0.90443 0.92059 0.96069 0.93692 0.78353 0.93808 0.75339 0.89873 0.90563 0.91282 0.90696 0.90611 0.90309 0.85017 0.84916 0.82667 0.86198 0.89172 0.88997 0.89090 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 7.06 37.16 0.26 -2.34 16 2 C 0.20 3.63 0.54 -131.82 -0.07 3.56 16 3 C 0.14 3.22 4.94 -4.03 -0.02 3.20 16 4 N -0.73 -18.98 5.03 -59.90 -0.30 -19.28 16 5 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 8 N -0.94 -28.63 13.06 55.49 0.72 -27.90 16 9 Si 0.90 23.14 29.55 -169.99 -5.02 18.12 16 10 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 N -0.69 -12.18 4.25 -47.61 -0.20 -12.38 16 14 C 0.54 9.86 6.46 -10.99 -0.07 9.79 16 15 O -0.54 -11.33 12.06 5.55 0.07 -11.26 16 16 C -0.06 -0.91 2.72 -93.05 -0.25 -1.17 16 17 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 18 C -0.10 -1.30 4.65 -26.70 -0.12 -1.42 16 19 C -0.12 -1.20 5.98 -26.68 -0.16 -1.36 16 20 C -0.08 -0.68 5.68 -28.11 -0.16 -0.84 16 21 C -0.12 -1.32 5.74 -104.62 -0.60 -1.92 16 22 C -0.08 -0.70 9.75 -39.17 -0.38 -1.08 16 23 C -0.18 -1.55 10.12 -39.52 -0.40 -1.95 16 24 C 0.11 1.11 11.19 -17.69 -0.20 0.91 16 25 N -0.48 -6.36 7.48 -9.51 -0.07 -6.43 16 26 C 0.15 1.96 6.19 -82.43 -0.51 1.45 16 27 C -0.15 -2.44 4.87 -90.58 -0.44 -2.88 16 28 C -0.18 -2.37 9.71 -26.73 -0.26 -2.63 16 29 C -0.18 -2.42 9.63 -26.69 -0.26 -2.67 16 30 H 0.05 0.73 7.00 -51.93 -0.36 0.37 16 31 H 0.08 1.41 6.13 -51.93 -0.32 1.09 16 32 H 0.06 0.91 6.81 -51.93 -0.35 0.56 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 1.11 6.22 -51.93 -0.32 0.79 16 35 H 0.38 10.33 6.63 -40.82 -0.27 10.06 16 36 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.41 6.94 6.52 -40.82 -0.27 6.68 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.05 7.78 -51.93 -0.40 0.65 16 40 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 47 H 0.12 2.36 7.09 -51.93 -0.37 1.99 16 48 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.09 1.18 7.39 -51.93 -0.38 0.80 16 50 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 51 H 0.10 1.26 5.87 -51.93 -0.31 0.95 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -33.35 394.45 -10.73 -44.08 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -7.97 Total: 17.81 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -3.89 Total: -8.69 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: 0.15 Total: -65.99 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.35 -10.73 -44.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753523821.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.725 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds