Wall clock time and date at job start Wed Apr 1 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 119.99851 * 2 1 4 4 O 1.21585 * 119.99855 * 180.02562 * 3 2 1 5 5 N 1.34773 * 120.00153 * 0.02562 * 3 2 1 6 6 C 1.46506 * 119.99849 * 179.97438 * 5 3 2 7 7 C 1.53036 * 109.45660 * 275.02469 * 6 5 3 8 8 C 1.53192 * 109.31089 * 178.60162 * 7 6 5 9 9 N 1.46927 * 108.76529 * 54.65720 * 8 7 6 10 10 C 1.36940 * 120.63047 * 126.36260 * 9 8 7 11 11 H 1.08000 * 119.99930 * 331.85785 * 10 9 8 12 12 C 1.38821 * 119.99753 * 151.86539 * 10 9 8 13 13 N 1.31616 * 120.00068 * 343.05777 * 12 10 9 14 14 Si 1.86800 * 119.99755 * 163.06262 * 12 10 9 15 15 H 1.48501 * 109.47090 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46961 * 119.99877 * 14 12 10 17 17 H 1.48500 * 109.46714 * 240.00072 * 14 12 10 18 18 C 1.46923 * 118.73769 * 306.38301 * 9 8 7 19 19 C 1.53041 * 109.45620 * 154.97104 * 6 5 3 20 20 C 1.46492 * 119.99773 * 180.02562 * 2 1 3 21 21 C 1.54349 * 110.82363 * 52.96978 * 20 2 1 22 22 C 1.51370 * 105.16936 * 215.42214 * 21 20 2 23 23 C 1.38489 * 130.39305 * 197.18392 * 22 21 20 24 24 C 1.38106 * 120.21899 * 180.02562 * 23 22 21 25 25 C 1.38256 * 119.93276 * 0.02562 * 24 23 22 26 26 C 1.38100 * 119.93233 * 359.97438 * 25 24 23 27 27 C 1.38227 * 109.75794 * 17.18957 * 22 21 20 28 28 C 1.51370 * 109.75616 * 359.97438 * 27 22 21 29 29 H 1.08997 * 109.47236 * 89.99395 * 1 2 3 30 30 H 1.09001 * 109.46899 * 210.00315 * 1 2 3 31 31 H 1.09000 * 109.46868 * 329.99584 * 1 2 3 32 32 H 0.96998 * 120.00189 * 359.72522 * 5 3 2 33 33 H 1.08994 * 109.46046 * 35.00176 * 6 5 3 34 34 H 1.09006 * 109.50222 * 298.56521 * 7 6 5 35 35 H 1.09000 * 109.50245 * 58.66527 * 7 6 5 36 36 H 1.08999 * 109.60077 * 294.87061 * 8 7 6 37 37 H 1.09007 * 109.70525 * 174.50393 * 8 7 6 38 38 H 0.96993 * 120.00045 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.58930 * 293.82034 * 18 9 8 40 40 H 1.08998 * 109.70283 * 173.46430 * 18 9 8 41 41 H 1.08994 * 109.50290 * 301.33712 * 19 6 5 42 42 H 1.09003 * 109.49742 * 61.40812 * 19 6 5 43 43 H 1.09010 * 110.72884 * 176.58964 * 20 2 1 44 44 H 1.09002 * 110.30249 * 334.34765 * 21 20 2 45 45 H 1.09000 * 110.30280 * 96.50145 * 21 20 2 46 46 H 1.07999 * 119.89065 * 0.02562 * 23 22 21 47 47 H 1.07993 * 120.03383 * 179.97438 * 24 23 22 48 48 H 1.07996 * 120.03020 * 179.97438 * 25 24 23 49 49 H 1.07999 * 119.89137 * 180.02562 * 26 25 24 50 50 H 1.08996 * 110.30081 * 223.88480 * 28 27 22 51 51 H 1.08999 * 110.38110 * 101.77735 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4650 2.3344 0.0005 6 6 2.1976 3.6032 0.0011 7 6 2.5619 3.9808 1.4387 8 6 3.3579 5.2897 1.4324 9 7 2.5806 6.3121 0.7188 10 6 2.3074 7.5179 1.3074 11 1 2.2366 7.5902 2.3827 12 6 2.1213 8.6474 0.5220 13 7 2.5251 8.6517 -0.7306 14 14 1.2979 10.1611 1.2432 15 1 0.9396 9.9017 2.6608 16 1 2.2311 11.3139 1.1710 17 1 0.0678 10.4706 0.4709 18 6 2.1018 6.0160 -0.6383 19 6 1.3202 4.6987 -0.6089 20 6 2.1974 -1.2687 -0.0006 21 6 1.7193 -2.1778 -1.1527 22 6 1.7883 -3.5857 -0.6010 23 6 1.7868 -4.8067 -1.2545 24 6 1.8580 -5.9817 -0.5323 25 6 1.9305 -5.9399 0.8477 26 6 1.9321 -4.7233 1.5011 27 6 1.8617 -3.5439 0.7786 28 6 1.8478 -2.1050 1.2484 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 0.4951 2.3344 -0.0031 33 1 3.1082 3.4970 -0.5884 34 1 1.6508 4.1116 2.0226 35 1 3.1672 3.1893 1.8806 36 1 4.3108 5.1357 0.9262 37 1 3.5369 5.6159 2.4570 38 1 2.3947 9.4407 -1.2795 39 1 2.9523 5.9212 -1.3134 40 1 1.4505 6.8197 -0.9817 41 1 1.0415 4.4182 -1.6246 42 1 0.4206 4.8223 -0.0058 43 1 3.2717 -1.0940 -0.0611 44 1 0.6947 -1.9298 -1.4298 45 1 2.3800 -2.0762 -2.0137 46 1 1.7297 -4.8401 -2.3325 47 1 1.8562 -6.9322 -1.0450 48 1 1.9858 -6.8578 1.4140 49 1 1.9892 -4.6915 2.5791 50 1 2.5957 -1.9540 2.0268 51 1 0.8583 -1.8359 1.6181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609340345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:10 Heat of formation + Delta-G solvation = 24.979953 kcal Electronic energy + Delta-G solvation = -29783.508326 eV Core-core repulsion = 25876.200810 eV Total energy + Delta-G solvation = -3907.307516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.86935 -39.77889 -37.68234 -36.47904 -34.55142 -33.93528 -31.95194 -31.74370 -30.11684 -29.45116 -28.52963 -27.63477 -26.96161 -24.97690 -23.00201 -22.21614 -21.92496 -21.24860 -20.97804 -19.67711 -19.25167 -18.15106 -16.79315 -16.70583 -16.37558 -15.81779 -15.68839 -15.14151 -14.98673 -14.70001 -14.04596 -13.82365 -13.65934 -13.60457 -13.56528 -13.49305 -13.08269 -13.03883 -12.91324 -12.69087 -12.59414 -12.48164 -12.24306 -11.74848 -11.52679 -11.43230 -11.30444 -11.11031 -11.09761 -10.80678 -10.72559 -10.46451 -10.24709 -10.02364 -9.96958 -9.73387 -9.51711 -9.13190 -8.90106 -8.80982 -8.55172 -8.41735 -6.67049 -5.78732 -3.20728 1.03174 1.07207 2.59764 3.28637 3.36972 3.44124 3.45094 3.47376 3.96698 4.11042 4.36430 4.50155 4.66119 4.69169 4.76015 4.79291 4.83904 4.89305 5.14383 5.22718 5.28936 5.34693 5.35098 5.39616 5.42918 5.52123 5.53152 5.56779 5.63481 5.74707 5.82141 5.84002 5.92234 6.10045 6.10663 6.19305 6.31076 6.32137 6.33283 6.38638 6.54449 6.61530 6.62975 6.68222 6.82208 6.89977 7.00549 7.08561 7.33406 7.63100 7.80527 8.05821 8.45587 8.72411 9.21804 9.85101 10.42343 11.30225 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.037271 B = 0.001855 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.066287 B =15088.668487 C =15247.281824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.629 5.629 3 C 0.705 3.295 4 O -0.588 6.588 5 N -0.737 5.737 6 C 0.167 3.833 7 C -0.139 4.139 8 C 0.147 3.853 9 N -0.593 5.593 10 C -0.250 4.250 11 H 0.066 0.934 12 C 0.001 3.999 13 N -0.903 5.903 14 Si 0.902 3.098 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.289 1.289 18 C 0.175 3.825 19 C -0.146 4.146 20 C 0.163 3.837 21 C -0.094 4.094 22 C -0.092 4.092 23 C -0.106 4.106 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.106 4.106 27 C -0.092 4.092 28 C -0.096 4.096 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.391 0.609 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.055 0.945 38 H 0.253 0.747 39 H 0.021 0.979 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.120 0.880 50 H 0.081 0.919 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -28.002 0.188 28.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.366 5.366 3 C 0.407 3.593 4 O -0.465 6.465 5 N -0.391 5.391 6 C 0.064 3.936 7 C -0.179 4.179 8 C 0.021 3.979 9 N -0.316 5.316 10 C -0.380 4.380 11 H 0.084 0.916 12 C -0.197 4.197 13 N -0.548 5.548 14 Si 0.732 3.268 15 H -0.203 1.203 16 H -0.217 1.217 17 H -0.216 1.216 18 C 0.048 3.952 19 C -0.186 4.186 20 C 0.058 3.942 21 C -0.132 4.132 22 C -0.093 4.093 23 C -0.124 4.124 24 C -0.139 4.139 25 C -0.139 4.139 26 C -0.124 4.124 27 C -0.092 4.092 28 C -0.134 4.134 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.226 0.774 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.134 0.866 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.138 0.862 50 H 0.100 0.900 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.643 -27.787 0.082 28.355 hybrid contribution -1.064 0.629 0.293 1.270 sum -6.707 -27.158 0.375 27.977 Atomic orbital electron populations 1.21699 0.80271 1.03049 1.01767 1.46951 1.05996 1.04573 1.79108 1.15923 0.85411 0.80315 0.77667 1.90911 1.11528 1.86060 1.58029 1.45699 1.09607 1.04985 1.78858 1.20928 0.95338 0.80064 0.97301 1.22383 1.00701 0.98949 0.95872 1.20880 0.92652 0.87836 0.96581 1.44100 1.59767 1.13218 1.14466 1.19237 1.42346 0.84849 0.91567 0.91616 1.25058 1.00757 0.97305 0.96629 1.70032 1.48142 1.28993 1.07600 0.86231 0.79049 0.83030 0.78519 1.20284 1.21735 1.21610 1.20738 0.96048 0.92090 0.86323 1.22542 0.99448 0.97607 0.98982 1.21458 0.98327 0.81401 0.93029 1.21427 1.02739 0.90189 0.98871 1.20488 0.99810 0.94561 0.94398 1.20632 1.00719 0.91229 0.99852 1.21039 1.00761 0.97889 0.94244 1.21040 1.00753 0.97486 0.94633 1.20638 1.00671 0.91319 0.99801 1.20494 0.99744 0.94708 0.94262 1.21459 1.03043 0.90126 0.98794 0.92586 0.90822 0.91151 0.77408 0.90062 0.92512 0.92713 0.96156 0.92610 0.93672 0.96080 0.89043 0.92803 0.92289 0.86623 0.89581 0.90069 0.86221 0.85941 0.85938 0.86213 0.90037 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 8.77 59.85 0.53 1.10 16 2 N -0.63 -7.01 2.89 -178.06 -0.51 -7.53 16 3 C 0.71 10.72 8.25 -86.92 -0.72 10.01 16 4 O -0.59 -11.35 15.38 5.29 0.08 -11.27 16 5 N -0.74 -10.60 4.94 -58.64 -0.29 -10.89 16 6 C 0.17 2.96 2.42 -67.89 -0.16 2.79 16 7 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 8 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 9 N -0.59 -14.84 2.99 -172.31 -0.52 -15.35 16 10 C -0.25 -6.84 9.58 -15.05 -0.14 -6.99 16 11 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 12 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 13 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16 14 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 19 C -0.15 -2.67 5.55 -26.61 -0.15 -2.82 16 20 C 0.16 1.71 3.49 -66.53 -0.23 1.48 16 21 C -0.09 -0.83 6.38 -26.85 -0.17 -1.00 16 22 C -0.09 -0.83 6.14 -104.20 -0.64 -1.47 16 23 C -0.11 -0.86 10.04 -39.54 -0.40 -1.26 16 24 C -0.12 -0.89 10.05 -39.62 -0.40 -1.29 16 25 C -0.12 -0.89 10.05 -39.63 -0.40 -1.29 16 26 C -0.11 -0.87 10.04 -39.54 -0.40 -1.27 16 27 C -0.09 -0.83 6.14 -104.20 -0.64 -1.47 16 28 C -0.10 -0.87 6.33 -26.86 -0.17 -1.04 16 29 H 0.06 0.37 7.93 -51.93 -0.41 -0.04 16 30 H 0.07 0.46 6.48 -51.93 -0.34 0.12 16 31 H 0.07 0.50 6.37 -51.93 -0.33 0.17 16 32 H 0.39 4.55 6.33 -40.82 -0.26 4.29 16 33 H 0.08 1.63 7.57 -51.93 -0.39 1.24 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 38 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.12 1.49 7.00 -51.92 -0.36 1.13 16 44 H 0.09 0.68 6.77 -51.93 -0.35 0.33 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 48 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.09 0.70 6.37 -51.93 -0.33 0.37 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -32.34 396.29 -12.17 -44.51 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -8.13 Total: 3.52 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -4.37 Total: -0.02 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.70 Total: -59.22 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.34 -12.17 -44.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609340345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.488 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds