Wall clock time and date at job start Wed Apr 1 2020 01:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 119.99851 * 2 1 4 4 O 1.21585 * 119.99855 * 180.02562 * 3 2 1 5 5 N 1.34773 * 120.00153 * 0.02562 * 3 2 1 6 6 C 1.46506 * 119.99849 * 179.97438 * 5 3 2 7 7 C 1.53036 * 109.45660 * 275.02469 * 6 5 3 8 8 C 1.53192 * 109.31089 * 178.60162 * 7 6 5 9 9 N 1.46927 * 108.76529 * 54.65720 * 8 7 6 10 10 C 1.36940 * 120.63047 * 126.36260 * 9 8 7 11 11 H 1.08000 * 119.99930 * 331.85785 * 10 9 8 12 12 C 1.38821 * 119.99753 * 151.86539 * 10 9 8 13 13 N 1.31616 * 120.00068 * 343.05777 * 12 10 9 14 14 Si 1.86800 * 119.99755 * 163.06262 * 12 10 9 15 15 H 1.48501 * 109.47090 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46961 * 119.99877 * 14 12 10 17 17 H 1.48500 * 109.46714 * 240.00072 * 14 12 10 18 18 C 1.46923 * 118.73769 * 306.38301 * 9 8 7 19 19 C 1.53041 * 109.45620 * 154.97104 * 6 5 3 20 20 C 1.46492 * 119.99773 * 180.02562 * 2 1 3 21 21 C 1.54349 * 110.82363 * 52.96978 * 20 2 1 22 22 C 1.51370 * 105.16936 * 215.42214 * 21 20 2 23 23 C 1.38489 * 130.39305 * 197.18392 * 22 21 20 24 24 C 1.38106 * 120.21899 * 180.02562 * 23 22 21 25 25 C 1.38256 * 119.93276 * 0.02562 * 24 23 22 26 26 C 1.38100 * 119.93233 * 359.97438 * 25 24 23 27 27 C 1.38227 * 109.75794 * 17.18957 * 22 21 20 28 28 C 1.51370 * 109.75616 * 359.97438 * 27 22 21 29 29 H 1.08997 * 109.47236 * 89.99395 * 1 2 3 30 30 H 1.09001 * 109.46899 * 210.00315 * 1 2 3 31 31 H 1.09000 * 109.46868 * 329.99584 * 1 2 3 32 32 H 0.96998 * 120.00189 * 359.72522 * 5 3 2 33 33 H 1.08994 * 109.46046 * 35.00176 * 6 5 3 34 34 H 1.09006 * 109.50222 * 298.56521 * 7 6 5 35 35 H 1.09000 * 109.50245 * 58.66527 * 7 6 5 36 36 H 1.08999 * 109.60077 * 294.87061 * 8 7 6 37 37 H 1.09007 * 109.70525 * 174.50393 * 8 7 6 38 38 H 0.96993 * 120.00045 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.58930 * 293.82034 * 18 9 8 40 40 H 1.08998 * 109.70283 * 173.46430 * 18 9 8 41 41 H 1.08994 * 109.50290 * 301.33712 * 19 6 5 42 42 H 1.09003 * 109.49742 * 61.40812 * 19 6 5 43 43 H 1.09010 * 110.72884 * 176.58964 * 20 2 1 44 44 H 1.09002 * 110.30249 * 334.34765 * 21 20 2 45 45 H 1.09000 * 110.30280 * 96.50145 * 21 20 2 46 46 H 1.07999 * 119.89065 * 0.02562 * 23 22 21 47 47 H 1.07993 * 120.03383 * 179.97438 * 24 23 22 48 48 H 1.07996 * 120.03020 * 179.97438 * 25 24 23 49 49 H 1.07999 * 119.89137 * 180.02562 * 26 25 24 50 50 H 1.08996 * 110.30081 * 223.88480 * 28 27 22 51 51 H 1.08999 * 110.38110 * 101.77735 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4650 2.3344 0.0005 6 6 2.1976 3.6032 0.0011 7 6 2.5619 3.9808 1.4387 8 6 3.3579 5.2897 1.4324 9 7 2.5806 6.3121 0.7188 10 6 2.3074 7.5179 1.3074 11 1 2.2366 7.5902 2.3827 12 6 2.1213 8.6474 0.5220 13 7 2.5251 8.6517 -0.7306 14 14 1.2979 10.1611 1.2432 15 1 0.9396 9.9017 2.6608 16 1 2.2311 11.3139 1.1710 17 1 0.0678 10.4706 0.4709 18 6 2.1018 6.0160 -0.6383 19 6 1.3202 4.6987 -0.6089 20 6 2.1974 -1.2687 -0.0006 21 6 1.7193 -2.1778 -1.1527 22 6 1.7883 -3.5857 -0.6010 23 6 1.7868 -4.8067 -1.2545 24 6 1.8580 -5.9817 -0.5323 25 6 1.9305 -5.9399 0.8477 26 6 1.9321 -4.7233 1.5011 27 6 1.8617 -3.5439 0.7786 28 6 1.8478 -2.1050 1.2484 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 0.4951 2.3344 -0.0031 33 1 3.1082 3.4970 -0.5884 34 1 1.6508 4.1116 2.0226 35 1 3.1672 3.1893 1.8806 36 1 4.3108 5.1357 0.9262 37 1 3.5369 5.6159 2.4570 38 1 2.3947 9.4407 -1.2795 39 1 2.9523 5.9212 -1.3134 40 1 1.4505 6.8197 -0.9817 41 1 1.0415 4.4182 -1.6246 42 1 0.4206 4.8223 -0.0058 43 1 3.2717 -1.0940 -0.0611 44 1 0.6947 -1.9298 -1.4298 45 1 2.3800 -2.0762 -2.0137 46 1 1.7297 -4.8401 -2.3325 47 1 1.8562 -6.9322 -1.0450 48 1 1.9858 -6.8578 1.4140 49 1 1.9892 -4.6915 2.5791 50 1 2.5957 -1.9540 2.0268 51 1 0.8583 -1.8359 1.6181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609340345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:09 Heat of formation + Delta-G solvation = 7.615930 kcal Electronic energy + Delta-G solvation = -29784.261286 eV Core-core repulsion = 25876.200810 eV Total energy + Delta-G solvation = -3908.060477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.76167 -40.73498 -39.16546 -37.48490 -36.03137 -34.98848 -33.67204 -32.34176 -31.76536 -31.11500 -29.34685 -28.28914 -27.79555 -26.78929 -24.23389 -23.84272 -23.09858 -21.98214 -21.84181 -21.15392 -20.42035 -19.38267 -18.54166 -17.72132 -17.14194 -16.87294 -16.69260 -16.45121 -16.12508 -15.75850 -15.56228 -15.34404 -15.01393 -14.80412 -14.59101 -14.35663 -14.19324 -14.14385 -14.05305 -13.69273 -13.59850 -13.34886 -13.25528 -13.14902 -13.00248 -12.61659 -12.49189 -12.46610 -12.20981 -12.10839 -12.03464 -11.98584 -11.86423 -11.67930 -11.54390 -11.37122 -11.16062 -10.56099 -10.13502 -9.72193 -9.52355 -9.42346 -8.70418 -7.87247 -5.32966 0.43505 0.48375 1.47890 1.49999 1.56651 1.60877 2.11383 2.52481 2.84784 2.92783 3.29068 3.43461 3.62075 3.67132 3.90320 4.00205 4.05701 4.07586 4.08093 4.19651 4.22511 4.29561 4.34962 4.46759 4.56503 4.65669 4.66522 4.68290 4.70171 4.79233 4.82032 4.85001 4.88426 4.92736 4.96864 5.04937 5.07322 5.16477 5.18201 5.20419 5.30002 5.47011 5.48860 5.57131 5.61371 5.63262 5.65569 5.71429 5.71684 5.95413 6.11943 6.39651 6.97797 7.15027 7.56461 7.84331 8.37660 9.20093 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.037271 B = 0.001855 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.066287 B =15088.668487 C =15247.281824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.619 5.619 3 C 0.701 3.299 4 O -0.635 6.635 5 N -0.724 5.724 6 C 0.180 3.820 7 C -0.122 4.122 8 C 0.145 3.855 9 N -0.608 5.608 10 C -0.262 4.262 11 H 0.068 0.932 12 C -0.050 4.050 13 N -0.936 5.936 14 Si 0.969 3.031 15 H -0.266 1.266 16 H -0.295 1.295 17 H -0.287 1.287 18 C 0.179 3.821 19 C -0.127 4.127 20 C 0.159 3.841 21 C -0.085 4.085 22 C -0.106 4.106 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.107 4.107 28 C -0.087 4.087 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.409 0.591 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.006 0.994 37 H 0.057 0.943 38 H 0.251 0.749 39 H -0.006 1.006 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.133 0.867 47 H 0.145 0.855 48 H 0.145 0.855 49 H 0.132 0.868 50 H 0.073 0.927 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 -30.096 0.879 31.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.355 5.355 3 C 0.403 3.597 4 O -0.516 6.516 5 N -0.380 5.380 6 C 0.075 3.925 7 C -0.163 4.163 8 C 0.019 3.981 9 N -0.332 5.332 10 C -0.392 4.392 11 H 0.085 0.915 12 C -0.246 4.246 13 N -0.582 5.582 14 Si 0.797 3.203 15 H -0.191 1.191 16 H -0.222 1.222 17 H -0.214 1.214 18 C 0.052 3.948 19 C -0.166 4.166 20 C 0.054 3.946 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.134 4.134 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.107 4.107 28 C -0.125 4.125 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.247 0.753 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.012 0.988 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.151 0.849 47 H 0.163 0.837 48 H 0.162 0.838 49 H 0.149 0.851 50 H 0.091 0.909 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.104 -29.942 0.786 31.029 hybrid contribution -0.247 1.176 0.077 1.204 sum -8.351 -28.765 0.862 29.965 Atomic orbital electron populations 1.21999 0.77566 1.04535 1.03329 1.46933 1.07539 1.03350 1.77682 1.16073 0.84903 0.81279 0.77465 1.90886 1.13845 1.86844 1.60066 1.45277 1.10237 1.03657 1.78836 1.20499 0.94546 0.81353 0.96100 1.22168 1.00478 0.96914 0.96691 1.20962 0.92352 0.88759 0.96068 1.44350 1.60519 1.13371 1.14939 1.19555 1.41876 0.85882 0.91869 0.91468 1.25827 1.01565 1.00138 0.97047 1.70190 1.49474 1.29645 1.08878 0.85183 0.77679 0.79143 0.78267 1.19068 1.22193 1.21383 1.20566 0.95052 0.93930 0.85222 1.22250 0.98820 0.94805 1.00753 1.21431 0.96757 0.81512 0.94927 1.21316 1.03237 0.89915 0.97784 1.20574 1.00715 0.94836 0.94538 1.20887 1.00580 0.91180 1.00768 1.21375 0.99808 0.98609 0.94463 1.21369 0.99860 0.98053 0.94994 1.20884 1.00615 0.91391 1.00605 1.20568 1.00771 0.94837 0.94548 1.21344 1.03364 0.90140 0.97660 0.90953 0.88908 0.90158 0.75332 0.92793 0.91495 0.92540 0.97638 0.92403 0.94020 0.98827 0.91734 0.90549 0.91008 0.89769 0.88214 0.90607 0.84910 0.83730 0.83769 0.85055 0.90876 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 8.77 127.77 1.12 1.94 16 2 N -0.62 -12.95 2.89 -835.52 -2.42 -15.36 16 3 C 0.70 20.85 8.25 179.05 1.48 22.33 16 4 O -0.64 -25.09 15.38 -3.98 -0.06 -25.15 16 5 N -0.72 -19.65 4.94 -457.69 -2.26 -21.91 16 6 C 0.18 6.27 2.42 45.02 0.11 6.38 16 7 C -0.12 -4.47 5.65 30.67 0.17 -4.30 16 8 C 0.14 6.39 6.52 86.36 0.56 6.96 16 9 N -0.61 -30.91 2.99 -699.06 -2.09 -33.01 16 10 C -0.26 -14.40 9.58 84.04 0.81 -13.60 16 11 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 12 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 13 N -0.94 -55.29 11.19 21.65 0.24 -55.05 16 14 Si 0.97 44.51 29.59 68.60 2.03 46.54 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 18 C 0.18 8.57 5.30 86.37 0.46 9.03 16 19 C -0.13 -4.51 5.55 30.67 0.17 -4.34 16 20 C 0.16 3.26 3.49 45.90 0.16 3.42 16 21 C -0.08 -1.40 6.38 30.52 0.19 -1.20 16 22 C -0.11 -1.78 6.14 -19.59 -0.12 -1.90 16 23 C -0.12 -1.67 10.04 22.30 0.22 -1.45 16 24 C -0.12 -1.54 10.05 22.24 0.22 -1.32 16 25 C -0.12 -1.56 10.05 22.24 0.22 -1.33 16 26 C -0.12 -1.73 10.04 22.30 0.22 -1.50 16 27 C -0.11 -1.82 6.14 -19.59 -0.12 -1.94 16 28 C -0.09 -1.49 6.33 30.51 0.19 -1.30 16 29 H 0.07 0.70 7.93 -2.39 -0.02 0.68 16 30 H 0.09 0.82 6.48 -2.39 -0.02 0.80 16 31 H 0.08 0.84 6.37 -2.39 -0.02 0.83 16 32 H 0.41 8.29 6.33 -92.71 -0.59 7.70 16 33 H 0.05 2.21 7.57 -2.39 -0.02 2.19 16 34 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.06 2.48 7.93 -2.38 -0.02 2.46 16 38 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 39 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 40 H 0.06 3.45 6.06 -2.39 -0.01 3.43 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.08 2.28 7.00 -2.38 -0.02 2.27 16 44 H 0.10 1.34 6.77 -2.39 -0.02 1.33 16 45 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 48 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 49 H 0.13 1.53 8.06 -2.91 -0.02 1.50 16 50 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.10 1.40 6.37 -2.39 -0.02 1.38 16 Total: -1.00 -72.03 396.29 2.28 -69.75 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.34 Total: 20.70 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 6.49 Total: 13.49 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -6.53 Total: -125.34 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.06 Total: -25.15 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -72.03 2.28 -69.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609340345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.367 kcal (2) G-P(sol) polarization free energy of solvation -72.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds