Wall clock time and date at job start Wed Apr 1 2020 02:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46509 * 120.00236 * 2 1 4 4 C 1.39711 * 120.00035 * 179.97438 * 2 1 3 5 5 C 1.39027 * 120.00291 * 0.02562 * 4 2 1 6 6 C 1.38206 * 120.21760 * 180.02562 * 5 4 2 7 7 C 1.38024 * 120.23028 * 0.02562 * 6 5 4 8 8 C 1.39579 * 120.00235 * 359.97438 * 7 6 5 9 9 C 1.47862 * 120.10719 * 180.02562 * 8 7 6 10 10 O 1.21548 * 119.99862 * 203.02027 * 9 8 7 11 11 N 1.34769 * 120.00072 * 23.28926 * 9 8 7 12 12 C 1.48358 * 128.19463 * 5.29764 * 11 9 8 13 13 C 1.54879 * 104.08341 * 138.28515 * 12 11 9 14 14 H 1.09002 * 111.86014 * 264.25161 * 13 12 11 15 15 C 1.53563 * 108.95170 * 139.48055 * 13 12 11 16 16 C 1.53956 * 106.02762 * 229.10900 * 15 13 12 17 17 C 1.53957 * 104.88885 * 29.56420 * 16 15 13 18 18 H 1.09005 * 110.13963 * 211.29722 * 17 16 15 19 19 N 1.46496 * 110.14497 * 89.57424 * 17 16 15 20 20 C 1.36942 * 120.00332 * 152.01298 * 19 17 16 21 21 H 1.07993 * 119.99476 * 359.97438 * 20 19 17 22 22 C 1.38809 * 120.00222 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99811 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99989 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47343 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.47103 * 119.99797 * 24 22 20 27 27 H 1.48499 * 109.47203 * 239.99588 * 24 22 20 28 28 C 1.53560 * 106.03240 * 330.43241 * 17 16 15 29 29 H 1.08997 * 112.32178 * 255.40592 * 28 17 16 30 30 C 1.48354 * 128.19528 * 185.62150 * 11 9 8 31 31 C 1.38641 * 120.00319 * 180.28597 * 4 2 1 32 32 H 1.08994 * 109.47321 * 270.00981 * 1 2 3 33 33 H 1.09000 * 109.46956 * 30.00493 * 1 2 3 34 34 H 1.09002 * 109.47150 * 150.00015 * 1 2 3 35 35 H 1.09000 * 109.46776 * 269.99569 * 3 2 1 36 36 H 1.08998 * 109.46764 * 29.99276 * 3 2 1 37 37 H 1.09000 * 109.47303 * 149.99700 * 3 2 1 38 38 H 1.07994 * 119.89002 * 0.02562 * 5 4 2 39 39 H 1.08000 * 119.88466 * 180.02562 * 6 5 4 40 40 H 1.07995 * 119.99813 * 180.02562 * 7 6 5 41 41 H 1.09000 * 110.46990 * 257.01435 * 12 11 9 42 42 H 1.08994 * 110.46798 * 19.61758 * 12 11 9 43 43 H 1.09000 * 110.14012 * 348.24618 * 15 13 12 44 44 H 1.09000 * 110.14451 * 109.90148 * 15 13 12 45 45 H 1.09005 * 110.35762 * 148.41037 * 16 15 13 46 46 H 1.08999 * 110.36115 * 270.70992 * 16 15 13 47 47 H 0.97004 * 119.99625 * 332.01660 * 19 17 16 48 48 H 0.97003 * 119.99926 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.46914 * 340.37754 * 30 11 9 50 50 H 1.08999 * 110.47219 * 102.97914 * 30 11 9 51 51 H 1.07993 * 120.11734 * 359.97012 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 1.4684 -2.4140 0.0005 6 6 2.1550 -3.6134 0.0016 7 6 3.5352 -3.6242 0.0032 8 6 4.2425 -2.4209 0.0032 9 6 5.7211 -2.4296 0.0044 10 8 6.3342 -1.4642 0.4161 11 7 6.3889 -3.5058 -0.4561 12 6 5.8355 -4.7232 -1.0985 13 6 6.8143 -5.0129 -2.2633 14 1 6.4594 -4.5946 -3.2052 15 6 7.0513 -6.5276 -2.3505 16 6 8.5777 -6.7155 -2.4229 17 6 9.1607 -5.5184 -1.6499 18 1 10.1255 -5.2342 -2.0702 19 7 9.3071 -5.8564 -0.2320 20 6 10.2743 -5.2460 0.5211 21 1 10.9294 -4.5158 0.0696 22 6 10.4134 -5.5667 1.8645 23 7 9.6159 -6.4579 2.4143 24 14 11.7332 -4.7346 2.8916 25 1 12.4925 -3.7809 2.0435 26 1 11.0969 -4.0005 4.0148 27 1 12.6597 -5.7611 3.4329 28 6 8.1523 -4.3727 -1.8189 29 1 8.4957 -3.6204 -2.5289 30 6 7.8510 -3.7565 -0.4346 31 6 3.5499 -1.2100 0.0065 32 1 -0.3633 0.0002 1.0276 33 1 -0.3633 0.8899 -0.5139 34 1 -0.3633 -0.8900 -0.5138 35 1 2.3793 1.5833 -1.0277 36 1 1.6084 2.0284 0.5137 37 1 3.1499 1.1384 0.5139 38 1 0.3885 -2.4120 -0.0003 39 1 1.6096 -4.5456 0.0012 40 1 4.0679 -4.5636 0.0036 41 1 5.8225 -5.5541 -0.3931 42 1 4.8330 -4.5304 -1.4804 43 1 6.6541 -7.0213 -1.4637 44 1 6.5797 -6.9303 -3.2469 45 1 8.8675 -7.6520 -1.9462 46 1 8.9133 -6.6970 -3.4597 47 1 8.7189 -6.5127 0.1733 48 1 9.7128 -6.6817 3.3531 49 1 8.3962 -2.8213 -0.3069 50 1 8.1058 -4.4588 0.3590 51 1 4.0918 -0.2759 0.0103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026408521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:06 Heat of formation + Delta-G solvation = 22.729941 kcal Electronic energy + Delta-G solvation = -30744.628711 eV Core-core repulsion = 26837.223627 eV Total energy + Delta-G solvation = -3907.405084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70405 -40.54902 -39.38766 -37.09587 -36.46402 -35.11395 -32.68122 -32.42546 -31.41852 -30.12133 -29.74086 -29.05158 -26.81113 -25.82162 -25.60453 -24.90578 -23.31579 -22.14982 -21.17664 -20.34086 -19.89832 -19.33770 -18.45947 -17.74300 -17.09983 -16.93493 -16.64480 -16.34054 -16.32635 -16.04356 -15.91685 -15.41577 -15.23252 -15.00186 -14.80820 -14.54286 -14.11981 -13.98896 -13.74201 -13.46506 -13.44028 -13.32531 -13.07000 -13.02311 -12.97720 -12.86825 -12.52101 -12.22231 -12.20442 -12.13592 -12.00868 -11.76680 -11.55982 -11.41543 -11.37284 -11.27030 -10.94220 -10.92330 -10.73363 -10.01271 -9.67309 -8.83994 -8.26872 -7.94563 -5.20058 -0.05835 0.56503 1.42490 1.46218 1.52577 1.82865 1.95199 2.25586 2.54852 2.90492 3.37337 3.40670 3.59289 3.76865 3.88736 3.91972 4.06850 4.17307 4.21168 4.32232 4.37566 4.40959 4.44399 4.48806 4.52056 4.54060 4.60498 4.63858 4.70764 4.78645 4.81017 4.83046 4.86250 4.90096 4.92060 4.98390 5.07293 5.13579 5.19627 5.23748 5.29306 5.42269 5.46533 5.50668 5.52684 5.55154 5.63457 5.68672 5.80304 6.28509 6.29345 6.46938 6.62792 7.08748 7.36978 8.12512 8.35448 9.27729 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.003003 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.484466 B = 9322.534146 C =10415.701006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.644 5.644 3 C 0.088 3.912 4 C 0.200 3.800 5 C -0.170 4.170 6 C -0.070 4.070 7 C -0.159 4.159 8 C -0.096 4.096 9 C 0.558 3.442 10 O -0.601 6.601 11 N -0.614 5.614 12 C 0.097 3.903 13 C -0.088 4.088 14 H 0.103 0.897 15 C -0.103 4.103 16 C -0.121 4.121 17 C 0.169 3.831 18 H 0.047 0.953 19 N -0.716 5.716 20 C -0.228 4.228 21 H 0.069 0.931 22 C -0.066 4.066 23 N -0.960 5.960 24 Si 0.952 3.048 25 H -0.271 1.271 26 H -0.303 1.303 27 H -0.290 1.290 28 C -0.118 4.118 29 H 0.075 0.925 30 C 0.105 3.895 31 C -0.164 4.164 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.140 0.860 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.377 0.623 48 H 0.249 0.751 49 H 0.027 0.973 50 H 0.105 0.895 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.793 5.551 -12.451 26.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.356 5.356 3 C -0.055 4.055 4 C 0.098 3.902 5 C -0.193 4.193 6 C -0.088 4.088 7 C -0.180 4.180 8 C -0.099 4.099 9 C 0.350 3.650 10 O -0.485 6.485 11 N -0.344 5.344 12 C -0.024 4.024 13 C -0.108 4.108 14 H 0.122 0.878 15 C -0.141 4.141 16 C -0.159 4.159 17 C 0.060 3.940 18 H 0.065 0.935 19 N -0.356 5.356 20 C -0.360 4.360 21 H 0.087 0.913 22 C -0.259 4.259 23 N -0.610 5.610 24 Si 0.783 3.217 25 H -0.196 1.196 26 H -0.231 1.231 27 H -0.218 1.218 28 C -0.141 4.141 29 H 0.093 0.907 30 C -0.017 4.017 31 C -0.188 4.188 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.158 0.842 41 H 0.094 0.906 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.210 0.790 48 H 0.058 0.942 49 H 0.046 0.954 50 H 0.122 0.878 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.458 6.426 -12.160 26.335 hybrid contribution 1.420 0.715 1.459 2.158 sum -21.038 7.141 -10.701 24.660 Atomic orbital electron populations 1.21840 0.77357 1.04089 1.01983 1.46557 1.06265 1.02567 1.80224 1.21729 0.97141 0.85046 1.01607 1.17823 0.89972 0.87636 0.94787 1.21214 1.01215 0.90182 1.06661 1.21234 0.92711 0.99034 0.95806 1.21661 0.95661 0.96717 1.03921 1.19530 0.90361 0.95526 1.04507 1.18641 0.88358 0.80966 0.77041 1.90692 1.70994 1.35821 1.50973 1.49234 1.09302 1.17970 1.57925 1.23344 0.99034 0.85657 0.94347 1.22673 0.93417 0.96797 0.97873 0.87830 1.22072 0.95669 0.93440 1.02923 1.22402 0.95880 0.97281 1.00314 1.20963 0.95729 0.93111 0.84232 0.93459 1.42595 1.38656 1.48431 1.05919 1.19472 1.08657 1.16334 0.91498 0.91340 1.25290 1.01574 1.00770 0.98269 1.69764 1.41917 1.37283 1.12064 0.85375 0.79481 0.77809 0.79004 1.19579 1.23138 1.21754 1.23159 0.97594 0.98790 0.94524 0.90708 1.22986 0.78494 0.99300 1.00935 1.20648 0.93107 0.97125 1.07883 0.92772 0.89840 0.90111 0.92906 0.89219 0.93010 0.82560 0.81877 0.84203 0.90619 0.87245 0.91952 0.88665 0.92161 0.89391 0.79016 0.94235 0.95432 0.87769 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.19 127.77 1.30 2.20 16 2 N -0.64 -11.59 3.41 -747.40 -2.55 -14.13 16 3 C 0.09 1.45 10.19 127.77 1.30 2.75 16 4 C 0.20 4.60 6.55 38.17 0.25 4.85 16 5 C -0.17 -3.06 9.20 22.45 0.21 -2.86 16 6 C -0.07 -1.27 10.02 22.21 0.22 -1.05 16 7 C -0.16 -4.00 7.97 22.54 0.18 -3.82 16 8 C -0.10 -3.12 5.74 -20.10 -0.12 -3.23 16 9 C 0.56 23.07 7.73 86.79 0.67 23.74 16 10 O -0.60 -30.13 16.84 -3.87 -0.07 -30.20 16 11 N -0.61 -23.40 3.30 -809.09 -2.67 -26.07 16 12 C 0.10 2.73 4.63 86.66 0.40 3.13 16 13 C -0.09 -2.28 3.95 -9.33 -0.04 -2.31 16 14 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 15 C -0.10 -2.36 6.37 31.11 0.20 -2.17 16 16 C -0.12 -3.33 6.42 31.24 0.20 -3.12 16 17 C 0.17 6.17 3.48 45.50 0.16 6.33 16 18 H 0.05 1.79 8.07 -2.38 -0.02 1.77 16 19 N -0.72 -33.51 3.28 -320.52 -1.05 -34.56 16 20 C -0.23 -12.28 8.36 84.03 0.70 -11.58 16 21 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 22 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 23 N -0.96 -57.67 13.06 21.65 0.28 -57.39 16 24 Si 0.95 47.62 29.55 68.60 2.03 49.64 16 25 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.30 -15.66 7.11 99.48 0.71 -14.96 16 27 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 28 C -0.12 -4.05 3.93 -9.47 -0.04 -4.09 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 C 0.11 4.55 5.91 86.53 0.51 5.06 16 31 C -0.16 -4.94 8.75 22.67 0.20 -4.74 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.56 8.07 -2.39 -0.02 0.54 16 34 H 0.08 0.62 6.19 -2.39 -0.01 0.60 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 1.02 8.07 -2.39 -0.02 1.00 16 37 H 0.05 1.07 6.18 -2.39 -0.01 1.06 16 38 H 0.16 1.76 6.12 -2.91 -0.02 1.74 16 39 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.14 3.32 4.99 -2.91 -0.01 3.31 16 41 H 0.08 2.18 7.04 -2.39 -0.02 2.17 16 42 H 0.11 2.45 5.61 -2.39 -0.01 2.44 16 43 H 0.06 1.53 7.13 -2.39 -0.02 1.52 16 44 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 45 H 0.06 1.83 8.09 -2.38 -0.02 1.81 16 46 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.38 18.85 7.86 -92.70 -0.73 18.12 16 48 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 49 H 0.03 1.34 7.85 -2.39 -0.02 1.32 16 50 H 0.10 5.31 4.97 -2.39 -0.01 5.30 16 51 H 0.11 3.71 5.89 -2.91 -0.02 3.69 16 Total: -1.00 -75.58 390.82 2.98 -72.60 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.23 Total: 34.35 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 6.78 Total: 5.77 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -5.99 Total: -132.16 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.07 Total: -30.20 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.64 kcal Total: -75.58 2.98 -72.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026408521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.327 kcal (2) G-P(sol) polarization free energy of solvation -75.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds