Wall clock time and date at job start Wed Apr 1 2020 02:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34775 * 120.00128 * 2 1 4 4 O 1.21282 * 119.99667 * 184.65806 * 3 2 1 5 5 C 1.50698 * 119.99941 * 4.66460 * 3 2 1 6 6 C 1.50703 * 110.01585 * 304.45761 * 5 3 2 7 7 C 1.38674 * 120.41661 * 115.12465 * 6 5 3 8 8 C 1.38623 * 118.42110 * 179.97438 * 7 6 5 9 9 C 1.38226 * 119.16293 * 0.02562 * 8 7 6 10 10 N 1.31852 * 120.76206 * 0.25173 * 9 8 7 11 11 C 1.31886 * 121.72724 * 359.48120 * 10 9 8 12 12 C 1.54259 * 110.03477 * 65.85160 * 5 3 2 13 13 C 1.54959 * 104.15938 * 95.75482 * 12 5 3 14 14 C 1.54890 * 102.78013 * 37.88640 * 13 12 5 15 15 C 1.53881 * 110.02979 * 183.07326 * 5 3 2 16 16 C 1.46503 * 119.99512 * 180.02562 * 2 1 3 17 17 H 1.09004 * 110.63787 * 181.68337 * 16 2 1 18 18 C 1.55152 * 110.72085 * 305.02108 * 16 2 1 19 19 C 1.54911 * 101.57965 * 153.86755 * 18 16 2 20 20 N 1.47425 * 104.83248 * 322.99021 * 19 18 16 21 21 C 1.36935 * 125.64960 * 204.09049 * 20 19 18 22 22 H 1.07993 * 120.00345 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00020 * 0.04552 * 21 20 19 24 24 N 1.31619 * 119.99918 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00143 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46870 * 89.99987 * 25 23 21 27 27 H 1.48501 * 109.47313 * 209.99795 * 25 23 21 28 28 H 1.48494 * 109.47071 * 329.99889 * 25 23 21 29 29 C 1.47023 * 108.70294 * 24.12873 * 20 19 18 30 30 H 1.09004 * 109.46938 * 84.51781 * 1 2 3 31 31 H 1.08997 * 109.47015 * 204.51791 * 1 2 3 32 32 H 1.08998 * 109.46710 * 324.51883 * 1 2 3 33 33 H 1.08002 * 120.78767 * 359.97438 * 7 6 5 34 34 H 1.08006 * 120.42268 * 179.97438 * 8 7 6 35 35 H 1.08000 * 119.62120 * 179.97438 * 9 8 7 36 36 H 1.07997 * 119.62450 * 180.26915 * 11 10 9 37 37 H 1.09002 * 110.48997 * 214.40145 * 12 5 3 38 38 H 1.08996 * 110.48944 * 337.04400 * 12 5 3 39 39 H 1.08997 * 110.72597 * 279.57285 * 13 12 5 40 40 H 1.09005 * 110.92634 * 156.29347 * 13 12 5 41 41 H 1.08995 * 110.49116 * 203.40427 * 14 13 12 42 42 H 1.09009 * 110.59564 * 80.81842 * 14 13 12 43 43 H 1.09000 * 110.03087 * 359.94561 * 15 5 3 44 44 H 1.08998 * 110.03384 * 121.33190 * 15 5 3 45 45 H 1.09001 * 111.00575 * 271.94183 * 18 16 2 46 46 H 1.08999 * 111.00291 * 35.79775 * 18 16 2 47 47 H 1.09000 * 110.37009 * 204.15131 * 19 18 16 48 48 H 1.08997 * 110.36770 * 81.82868 * 19 18 16 49 49 H 0.97003 * 120.00180 * 180.02562 * 24 23 21 50 50 H 1.08995 * 109.88454 * 239.52093 * 29 20 19 51 51 H 1.09002 * 110.00727 * 118.42797 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3488 1.1688 -0.0853 5 6 1.3892 2.4701 0.1061 6 6 0.3577 2.5623 -0.9887 7 6 -0.9938 2.5892 -0.6794 8 6 -1.9069 2.6751 -1.7188 9 6 -1.4433 2.7303 -3.0198 10 7 -0.1505 2.6970 -3.2770 11 6 0.7466 2.6207 -2.3133 12 6 0.7069 2.5763 1.4855 13 6 1.7062 3.3956 2.3407 14 6 2.2491 4.4363 1.3302 15 6 2.3698 3.6520 0.0073 16 6 2.1975 -1.2688 -0.0006 17 1 3.2726 -1.0918 0.0295 18 6 1.7507 -2.1611 1.1874 19 6 2.0637 -3.5786 0.6466 20 7 1.7323 -3.5167 -0.7885 21 6 1.4002 -4.5853 -1.5778 22 1 1.1736 -4.4350 -2.6229 23 6 1.3545 -5.8618 -1.0344 24 7 1.6309 -6.0451 0.2393 25 14 0.9009 -7.3195 -2.1109 26 1 2.1313 -7.8901 -2.7156 27 1 0.2294 -8.3549 -1.2849 28 1 -0.0185 -6.8724 -3.1878 29 6 1.8181 -2.1176 -1.2323 30 1 -0.3633 0.0982 -1.0230 31 1 -0.3633 -0.9350 0.4264 32 1 -0.3633 0.8368 0.5965 33 1 -1.3271 2.5442 0.3470 34 1 -2.9673 2.6979 -1.5148 35 1 -2.1482 2.7970 -3.8354 36 1 1.7973 2.5999 -2.5625 37 1 -0.2439 3.1027 1.4013 38 1 0.5586 1.5856 1.9151 39 1 2.5106 2.7592 2.7094 40 1 1.1967 3.8898 3.1680 41 1 3.2256 4.8025 1.6470 42 1 1.5494 5.2650 1.2199 43 1 3.3879 3.2830 -0.1165 44 1 2.1000 4.2917 -0.8329 45 1 2.3373 -1.9453 2.0804 46 1 0.6850 -2.0446 1.3843 47 1 1.4430 -4.3215 1.1476 48 1 3.1198 -3.8118 0.7823 49 1 1.5993 -6.9372 0.6190 50 1 0.8540 -1.7930 -1.6236 51 1 2.5834 -2.0168 -2.0019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033366346.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:09 Heat of formation + Delta-G solvation = 42.967421 kcal Electronic energy + Delta-G solvation = -31822.556984 eV Core-core repulsion = 27916.029463 eV Total energy + Delta-G solvation = -3906.527521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.57961 -39.62670 -38.01403 -36.83760 -34.97503 -33.06217 -32.17059 -31.86535 -29.39318 -29.01580 -28.43553 -27.47598 -26.49707 -24.55540 -23.87269 -23.31809 -22.07221 -20.78970 -20.22984 -19.56642 -18.68705 -17.78128 -17.00438 -16.86106 -16.41880 -16.31829 -15.73457 -15.20250 -14.88588 -14.66845 -14.37140 -14.15776 -14.02651 -13.82915 -13.62508 -13.15037 -13.01577 -12.98170 -12.55500 -12.43278 -12.23961 -11.87190 -11.67767 -11.60099 -11.53197 -11.35232 -11.21496 -11.12889 -11.03085 -10.86352 -10.82119 -10.71714 -10.42876 -10.12805 -10.02043 -9.83808 -9.69304 -9.59394 -9.56531 -8.96650 -8.67320 -8.36800 -6.86350 -5.67340 -3.09445 0.87615 1.05819 2.65060 3.08888 3.39365 3.44507 3.46134 3.58128 4.10641 4.19514 4.31011 4.41106 4.48472 4.59630 4.61251 4.72256 4.90171 4.94148 5.14535 5.15879 5.20250 5.31670 5.36091 5.38341 5.42485 5.44658 5.52257 5.53509 5.54934 5.59293 5.69234 5.70057 5.74619 5.80025 5.86423 5.91154 5.93780 5.97601 6.00993 6.17573 6.23256 6.36325 6.47595 6.52693 6.57037 6.69420 6.96766 7.46399 7.57398 7.61219 7.79951 7.81561 8.25751 8.33217 9.19667 9.80120 10.44319 11.36481 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.003333 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.010590 B = 8398.482741 C = 9527.230358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.592 5.592 3 C 0.528 3.472 4 O -0.536 6.536 5 C -0.035 4.035 6 C -0.118 4.118 7 C -0.075 4.075 8 C -0.170 4.170 9 C 0.095 3.905 10 N -0.478 5.478 11 C 0.110 3.890 12 C -0.122 4.122 13 C -0.123 4.123 14 C -0.120 4.120 15 C -0.113 4.113 16 C 0.126 3.874 17 H 0.103 0.897 18 C -0.152 4.152 19 C 0.154 3.846 20 N -0.602 5.602 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.915 3.085 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.131 3.869 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.110 0.890 48 H 0.015 0.985 49 H 0.252 0.748 50 H 0.025 0.975 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 22.660 3.683 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.323 5.323 3 C 0.315 3.685 4 O -0.414 6.414 5 C -0.039 4.039 6 C -0.120 4.120 7 C -0.101 4.101 8 C -0.190 4.190 9 C -0.062 4.062 10 N -0.186 5.186 11 C -0.047 4.047 12 C -0.160 4.160 13 C -0.161 4.161 14 C -0.157 4.157 15 C -0.150 4.150 16 C 0.023 3.977 17 H 0.121 0.879 18 C -0.192 4.192 19 C 0.029 3.971 20 N -0.328 5.328 21 C -0.350 4.350 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.571 5.571 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.004 3.996 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.170 0.830 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.114 0.886 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.127 0.873 48 H 0.033 0.967 49 H 0.063 0.937 50 H 0.043 0.957 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.924 22.435 2.751 23.366 hybrid contribution -0.634 -0.929 0.184 1.140 sum -6.558 21.506 2.934 22.674 Atomic orbital electron populations 1.22201 0.80076 1.03546 1.01675 1.47746 1.06806 1.05778 1.71937 1.20113 0.87592 0.84736 0.76065 1.90655 1.13949 1.86619 1.50132 1.20263 0.94515 0.94602 0.94510 1.20568 0.94352 1.01741 0.95330 1.21658 0.92172 0.95982 1.00270 1.22138 1.00948 1.02018 0.93861 1.22819 0.92298 0.95113 0.95975 1.67736 1.02637 1.11505 1.36747 1.22626 0.99576 0.94575 0.87909 1.22752 0.99061 1.01598 0.92569 1.22504 0.98615 0.97479 0.97493 1.22318 1.01203 0.97602 0.94609 1.22311 1.00436 0.94105 0.98185 1.22283 0.97047 0.81336 0.97080 0.87898 1.23402 1.00567 0.98822 0.96374 1.21937 0.98906 0.91750 0.84533 1.44429 1.81000 1.00722 1.06663 1.19072 1.38820 0.85002 0.92118 0.90516 1.24778 1.01995 0.97356 0.96415 1.69779 1.55560 1.20771 1.11007 0.86065 0.78017 0.82284 0.79099 1.21578 1.21624 1.20700 1.21488 0.97887 0.86238 0.93963 0.92937 0.90054 0.90874 0.84063 0.84589 0.82786 0.83042 0.89763 0.90228 0.91040 0.91095 0.91265 0.91695 0.88641 0.91237 0.92048 0.91688 0.87260 0.96729 0.93696 0.95670 0.95813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 7.01 59.85 0.42 1.30 16 2 N -0.59 -9.13 2.83 -171.83 -0.49 -9.62 16 3 C 0.53 7.91 6.18 -10.99 -0.07 7.84 16 4 O -0.54 -9.79 14.60 5.56 0.08 -9.71 16 5 C -0.03 -0.38 0.45 -155.69 -0.07 -0.45 16 6 C -0.12 -1.25 2.97 -104.48 -0.31 -1.56 16 7 C -0.08 -0.64 6.66 -39.28 -0.26 -0.90 16 8 C -0.17 -1.38 10.11 -39.44 -0.40 -1.78 16 9 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 10 N -0.48 -6.04 10.36 -13.25 -0.14 -6.17 16 11 C 0.11 1.35 9.81 -17.55 -0.17 1.18 16 12 C -0.12 -1.07 4.27 -25.04 -0.11 -1.18 16 13 C -0.12 -1.04 6.91 -24.70 -0.17 -1.21 16 14 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 15 C -0.11 -1.17 5.79 -25.61 -0.15 -1.32 16 16 C 0.13 2.36 3.35 -66.10 -0.22 2.14 16 17 H 0.10 2.09 7.01 -51.93 -0.36 1.73 16 18 C -0.15 -2.89 6.59 -24.58 -0.16 -3.05 16 19 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 20 N -0.60 -15.58 3.39 -170.08 -0.58 -16.16 16 21 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 22 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -26.74 10.09 55.49 0.56 -26.18 16 25 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 C 0.13 2.88 6.88 -3.06 -0.02 2.86 16 30 H 0.05 0.71 7.17 -51.93 -0.37 0.34 16 31 H 0.08 1.13 6.13 -51.93 -0.32 0.81 16 32 H 0.07 0.72 2.91 -51.93 -0.15 0.57 16 33 H 0.14 0.89 5.27 -52.49 -0.28 0.61 16 34 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.15 1.91 8.00 -52.49 -0.42 1.49 16 37 H 0.08 0.56 5.56 -51.93 -0.29 0.27 16 38 H 0.08 0.75 6.33 -51.93 -0.33 0.42 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 43 H 0.10 1.20 6.40 -51.93 -0.33 0.87 16 44 H 0.07 0.67 7.20 -51.93 -0.37 0.30 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.06 1.17 6.14 -51.93 -0.32 0.85 16 47 H 0.11 2.94 5.87 -51.93 -0.31 2.64 16 48 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.03 0.55 7.07 -51.93 -0.37 0.18 16 51 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -32.55 379.09 -9.76 -42.31 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.57 Total: 2.32 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -2.32 Total: 0.40 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.64 Total: -58.13 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.55 -9.76 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033366346.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.278 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds