Wall clock time and date at job start Wed Apr 1 2020 02:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99757 * 2 1 4 4 O 1.21283 * 120.00340 * 185.06844 * 3 2 1 5 5 C 1.50706 * 120.00075 * 5.06671 * 3 2 1 6 6 C 1.50697 * 110.01413 * 59.11756 * 5 3 2 7 7 C 1.38675 * 120.41964 * 188.19791 * 6 5 3 8 8 C 1.38631 * 118.42191 * 179.78183 * 7 6 5 9 9 C 1.38222 * 119.15895 * 0.51548 * 8 7 6 10 10 N 1.31849 * 120.76608 * 359.72422 * 9 8 7 11 11 C 1.31883 * 121.72519 * 0.02562 * 10 9 8 12 12 C 1.53871 * 110.03109 * 297.72688 * 5 3 2 13 13 C 1.54371 * 106.54615 * 240.72405 * 12 5 3 14 14 C 1.54890 * 104.21361 * 23.57612 * 13 12 5 15 15 C 1.54268 * 110.03453 * 180.50676 * 5 3 2 16 16 C 1.46498 * 120.00479 * 179.97438 * 2 1 3 17 17 H 1.08992 * 110.88800 * 183.87622 * 16 2 1 18 18 C 1.55160 * 111.00302 * 60.00009 * 16 2 1 19 19 C 1.54323 * 102.94226 * 206.38758 * 18 16 2 20 20 N 1.47021 * 107.27129 * 22.19243 * 19 18 16 21 21 C 1.36935 * 125.64785 * 181.02053 * 20 19 18 22 22 H 1.08000 * 120.00208 * 174.87708 * 21 20 19 23 23 C 1.38809 * 119.99876 * 354.88380 * 21 20 19 24 24 N 1.31621 * 119.99934 * 157.39194 * 23 21 20 25 25 Si 1.86804 * 120.00140 * 337.39300 * 23 21 20 26 26 H 1.48507 * 109.47030 * 185.55944 * 25 23 21 27 27 H 1.48500 * 109.46887 * 305.55559 * 25 23 21 28 28 H 1.48500 * 109.47390 * 65.55890 * 25 23 21 29 29 C 1.47422 * 108.70268 * 1.28888 * 20 19 18 30 30 H 1.08997 * 109.47053 * 275.16225 * 1 2 3 31 31 H 1.08999 * 109.47249 * 35.17157 * 1 2 3 32 32 H 1.09003 * 109.46832 * 155.16775 * 1 2 3 33 33 H 1.08002 * 120.79107 * 0.02562 * 7 6 5 34 34 H 1.07999 * 120.41519 * 180.26490 * 8 7 6 35 35 H 1.08002 * 119.61707 * 179.70545 * 9 8 7 36 36 H 1.08009 * 119.61807 * 180.02562 * 11 10 9 37 37 H 1.08993 * 110.03636 * 0.02562 * 12 5 3 38 38 H 1.09000 * 110.03237 * 121.42922 * 12 5 3 39 39 H 1.09002 * 110.46510 * 264.90110 * 13 12 5 40 40 H 1.08995 * 110.49097 * 142.26847 * 13 12 5 41 41 H 1.08999 * 110.76077 * 203.75826 * 14 13 12 42 42 H 1.09004 * 110.75627 * 80.38596 * 14 13 12 43 43 H 1.08996 * 110.48545 * 214.35317 * 15 5 3 44 44 H 1.09004 * 110.48318 * 336.99989 * 15 5 3 45 45 H 1.09000 * 110.71822 * 88.02239 * 18 16 2 46 46 H 1.09001 * 110.87214 * 324.82159 * 18 16 2 47 47 H 1.08996 * 109.88051 * 262.77562 * 19 18 16 48 48 H 1.09002 * 109.88122 * 141.61332 * 19 18 16 49 49 H 0.96998 * 120.00323 * 354.98393 * 24 23 21 50 50 H 1.09002 * 110.36828 * 94.48495 * 29 20 19 51 51 H 1.08999 * 110.36843 * 216.80471 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3481 1.1694 -0.0928 5 6 1.3897 2.4698 0.1153 6 6 0.5981 2.4978 1.3973 7 6 -0.3037 3.5222 1.6435 8 6 -1.0133 3.5046 2.8343 9 6 -0.7921 2.4797 3.7350 10 7 0.0771 1.5245 3.4696 11 6 0.7660 1.5065 2.3452 12 6 0.4485 2.6449 -1.0894 13 6 0.8997 3.9295 -1.8167 14 6 2.3830 4.0990 -1.4044 15 6 2.3786 3.6532 0.0789 16 6 2.1976 -1.2686 0.0006 17 1 3.2717 -1.0971 0.0693 18 6 1.8485 -2.1130 -1.2535 19 6 2.1075 -3.5587 -0.7799 20 7 2.0281 -3.5579 0.6882 21 6 2.2187 -4.6454 1.4983 22 1 2.2205 -4.5255 2.5716 23 6 2.4097 -5.9018 0.9400 24 7 3.0183 -6.8430 1.6300 25 14 1.8029 -6.2568 -0.7907 26 1 2.0055 -7.6949 -1.1010 27 1 0.3577 -5.9288 -0.8856 28 1 2.5632 -5.4292 -1.7614 29 6 1.7030 -2.1939 1.1433 30 1 -0.3633 0.0925 1.0235 31 1 -0.3634 0.8400 -0.5920 32 1 -0.3633 -0.9327 -0.4316 33 1 -0.4526 4.3128 0.9229 34 1 -1.7269 4.2840 3.0571 35 1 -1.3374 2.4614 4.6670 36 1 1.4691 0.7071 2.1626 37 1 0.5331 1.7876 -1.7571 38 1 -0.5808 2.7510 -0.7467 39 1 0.3108 4.7837 -1.4823 40 1 0.8155 3.8063 -2.8964 41 1 2.6923 5.1404 -1.4938 42 1 3.0261 3.4514 -2.0004 43 1 2.0285 4.4627 0.7195 44 1 3.3737 3.3282 0.3826 45 1 2.5040 -1.8565 -2.0858 46 1 0.8032 -1.9800 -1.5326 47 1 3.0993 -3.8807 -1.0973 48 1 1.3496 -4.2251 -1.1918 49 1 3.3976 -6.6388 2.4991 50 1 0.6273 -2.0868 1.2827 51 1 2.2308 -1.9672 2.0696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033366347.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:12 Heat of formation + Delta-G solvation = 51.445598 kcal Electronic energy + Delta-G solvation = -31955.308369 eV Core-core repulsion = 28049.148489 eV Total energy + Delta-G solvation = -3906.159880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71149 -39.69989 -38.29454 -37.06644 -35.21752 -32.97132 -32.47690 -31.86089 -29.70620 -29.12270 -28.72423 -27.87726 -26.89804 -24.45869 -23.66012 -23.27872 -22.03449 -21.02171 -20.73895 -19.78031 -18.87806 -17.98958 -17.44351 -17.04743 -16.72008 -16.08252 -15.84154 -15.37684 -15.10102 -14.98793 -14.62337 -14.33892 -13.83317 -13.66820 -13.58348 -13.36595 -13.26860 -13.02577 -12.78294 -12.63740 -12.46575 -12.30287 -12.20658 -11.94091 -11.74364 -11.52184 -11.43665 -11.29293 -11.18044 -11.05842 -11.00672 -10.87206 -10.51418 -10.04258 -10.01516 -9.72554 -9.57732 -9.46023 -9.15637 -9.02037 -8.64178 -8.44311 -7.07200 -6.31065 -3.17334 0.82420 1.01439 2.49624 2.89071 3.43944 3.52152 3.52730 3.73380 4.01443 4.09123 4.26725 4.34261 4.53080 4.59284 4.65700 4.68011 4.77417 4.87522 4.98319 5.01608 5.09011 5.10840 5.15380 5.19736 5.23971 5.32530 5.34394 5.41987 5.44755 5.48412 5.51289 5.52113 5.59168 5.67554 5.72820 5.78156 5.82827 5.85808 5.87912 5.93387 6.00290 6.07474 6.17660 6.38337 6.40166 6.43671 6.54546 6.73373 6.76432 7.38265 7.66471 7.78148 8.10857 8.35232 9.05360 9.57898 10.23059 11.19136 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.003473 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.222847 B = 8059.135091 C = 9115.126286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.598 5.598 3 C 0.525 3.475 4 O -0.530 6.530 5 C -0.034 4.034 6 C -0.123 4.123 7 C -0.066 4.066 8 C -0.174 4.174 9 C 0.096 3.904 10 N -0.476 5.476 11 C 0.110 3.890 12 C -0.115 4.115 13 C -0.124 4.124 14 C -0.123 4.123 15 C -0.104 4.104 16 C 0.122 3.878 17 H 0.111 0.889 18 C -0.139 4.139 19 C 0.119 3.881 20 N -0.608 5.608 21 C -0.326 4.326 22 H 0.080 0.920 23 C -0.018 4.018 24 N -0.921 5.921 25 Si 1.056 2.944 26 H -0.300 1.300 27 H -0.299 1.299 28 H -0.282 1.282 29 C 0.132 3.868 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.049 0.951 48 H 0.028 0.972 49 H 0.263 0.737 50 H 0.027 0.973 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.741 27.459 -5.312 29.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.330 5.330 3 C 0.312 3.688 4 O -0.406 6.406 5 C -0.038 4.038 6 C -0.126 4.126 7 C -0.092 4.092 8 C -0.194 4.194 9 C -0.061 4.061 10 N -0.184 5.184 11 C -0.047 4.047 12 C -0.152 4.152 13 C -0.161 4.161 14 C -0.161 4.161 15 C -0.141 4.141 16 C 0.019 3.981 17 H 0.129 0.871 18 C -0.177 4.177 19 C -0.007 4.007 20 N -0.336 5.336 21 C -0.453 4.453 22 H 0.098 0.902 23 C -0.218 4.218 24 N -0.562 5.562 25 Si 0.889 3.111 26 H -0.228 1.228 27 H -0.227 1.227 28 H -0.209 1.209 29 C 0.005 3.995 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.067 0.933 48 H 0.045 0.955 49 H 0.073 0.927 50 H 0.045 0.955 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.097 25.482 -5.788 27.670 hybrid contribution -0.343 1.753 0.637 1.897 sum -9.440 27.236 -5.151 29.282 Atomic orbital electron populations 1.22267 0.79873 1.03927 1.02450 1.47769 1.06959 1.05744 1.72542 1.20208 0.87719 0.84805 0.76030 1.90691 1.13883 1.86820 1.49210 1.20319 0.95529 0.94686 0.93273 1.20544 0.98509 0.96985 0.96531 1.21342 0.93887 0.97124 0.96870 1.22119 1.01431 1.00602 0.95198 1.22867 0.94395 0.89794 0.99058 1.67811 1.06049 1.24935 1.19583 1.22986 0.96468 0.96813 0.88456 1.22486 0.98386 0.99244 0.95115 1.22423 0.96550 0.96936 1.00198 1.22504 0.96369 1.01374 0.95834 1.22426 0.99655 0.94683 0.97379 1.22527 0.97739 0.81283 0.96578 0.87068 1.22940 1.01426 0.95944 0.97422 1.21926 0.99166 0.93682 0.85877 1.44751 1.83441 1.04881 1.00528 1.20127 1.48654 0.86131 0.90380 0.90220 1.25735 0.98891 0.91607 1.05532 1.70897 1.34804 1.35676 1.14787 0.84097 0.76144 0.74369 0.76480 1.22848 1.22704 1.20908 1.21810 0.97391 0.85351 0.94983 0.92300 0.90261 0.90183 0.84701 0.84703 0.82745 0.82670 0.90388 0.90304 0.91367 0.91178 0.91148 0.90914 0.90930 0.89231 0.91002 0.91246 0.93340 0.95461 0.92730 0.95526 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 7.32 59.85 0.44 1.09 16 2 N -0.60 -8.30 1.92 -171.35 -0.33 -8.63 16 3 C 0.53 7.30 4.96 -10.98 -0.05 7.24 16 4 O -0.53 -9.19 14.78 5.56 0.08 -9.11 16 5 C -0.03 -0.35 0.47 -155.69 -0.07 -0.42 16 6 C -0.12 -1.25 3.69 -104.48 -0.39 -1.64 16 7 C -0.07 -0.52 8.27 -39.27 -0.32 -0.84 16 8 C -0.17 -1.30 10.11 -39.44 -0.40 -1.70 16 9 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 10 N -0.48 -6.24 10.36 -13.25 -0.14 -6.38 16 11 C 0.11 1.41 7.69 -17.55 -0.14 1.28 16 12 C -0.11 -0.89 3.79 -25.56 -0.10 -0.99 16 13 C -0.12 -0.81 6.83 -25.02 -0.17 -0.98 16 14 C -0.12 -0.99 6.91 -24.74 -0.17 -1.16 16 15 C -0.10 -1.00 5.65 -25.07 -0.14 -1.14 16 16 C 0.12 2.12 3.45 -65.66 -0.23 1.89 16 17 H 0.11 2.14 7.04 -51.93 -0.37 1.77 16 18 C -0.14 -2.35 6.49 -24.90 -0.16 -2.51 16 19 C 0.12 2.61 4.56 -3.07 -0.01 2.59 16 20 N -0.61 -15.11 3.34 -169.94 -0.57 -15.68 16 21 C -0.33 -9.50 10.50 -15.06 -0.16 -9.66 16 22 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 23 C -0.02 -0.53 5.48 -17.43 -0.10 -0.62 16 24 N -0.92 -29.32 13.70 55.49 0.76 -28.56 16 25 Si 1.06 26.77 24.67 -169.99 -4.19 22.58 16 26 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 27 H -0.30 -7.31 7.06 56.52 0.40 -6.91 16 28 H -0.28 -6.51 5.22 56.52 0.29 -6.21 16 29 C 0.13 2.69 6.79 -2.41 -0.02 2.68 16 30 H 0.06 0.71 5.86 -51.93 -0.30 0.40 16 31 H 0.08 0.71 3.95 -51.93 -0.21 0.50 16 32 H 0.08 0.94 6.37 -51.93 -0.33 0.61 16 33 H 0.14 0.73 7.79 -52.49 -0.41 0.32 16 34 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.16 2.33 5.87 -52.48 -0.31 2.02 16 37 H 0.08 0.67 6.59 -51.93 -0.34 0.33 16 38 H 0.08 0.51 6.52 -51.93 -0.34 0.17 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.60 7.42 -51.93 -0.39 0.21 16 44 H 0.09 1.08 6.83 -51.93 -0.35 0.72 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.04 6.47 -51.93 -0.34 0.71 16 47 H 0.05 1.13 6.78 -51.93 -0.35 0.78 16 48 H 0.03 0.63 4.24 -51.93 -0.22 0.41 16 49 H 0.26 8.28 8.73 -40.82 -0.36 7.93 16 50 H 0.03 0.53 6.97 -51.93 -0.36 0.17 16 51 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -34.50 372.78 -8.83 -43.34 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.68 Total: 0.99 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.38 Total: -4.17 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.27 Total: -59.25 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 26.77 SS G_CDS: -4.19 Total: 22.58 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.50 -8.83 -43.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033366347.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.781 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds