Wall clock time and date at job start Wed Apr 1 2020 01:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48821 * 110.96973 * 2 1 4 4 C 1.54382 * 104.46554 * 159.05437 * 3 2 1 5 5 H 1.09004 * 110.32671 * 217.17839 * 4 3 2 6 6 C 1.50700 * 110.32744 * 95.07119 * 4 3 2 7 7 O 1.21286 * 119.99860 * 242.83384 * 6 4 3 8 8 N 1.34778 * 119.99849 * 62.82554 * 6 4 3 9 9 C 1.46499 * 119.99526 * 180.02562 * 8 6 4 10 10 C 1.53007 * 109.46895 * 179.97438 * 9 8 6 11 11 H 1.08993 * 112.78067 * 303.72858 * 10 9 8 12 12 C 1.53237 * 113.38302 * 173.01444 * 10 9 8 13 13 C 1.53491 * 83.42791 * 219.29389 * 12 10 9 14 14 N 1.47060 * 87.98812 * 25.90168 * 13 12 10 15 15 C 1.36943 * 136.06025 * 152.84024 * 14 13 12 16 16 H 1.08002 * 119.99788 * 179.97438 * 15 14 13 17 17 C 1.38811 * 119.99622 * 0.27775 * 15 14 13 18 18 N 1.31614 * 120.00467 * 359.72375 * 17 15 14 19 19 Si 1.86801 * 119.99700 * 179.72266 * 17 15 14 20 20 H 1.48496 * 109.47031 * 59.99836 * 19 17 15 21 21 H 1.48497 * 109.47267 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47169 * 300.00118 * 19 17 15 23 23 C 1.54264 * 105.14824 * 336.12242 * 4 3 2 24 24 H 1.09003 * 110.32217 * 118.94709 * 23 4 3 25 25 C 1.50699 * 110.32553 * 241.05377 * 23 4 3 26 26 C 1.38235 * 119.99785 * 59.72491 * 25 23 4 27 27 C 1.38238 * 119.99464 * 179.76868 * 26 25 23 28 28 C 1.38227 * 120.00454 * 0.50855 * 27 26 25 29 29 C 1.38237 * 120.00169 * 359.74362 * 28 27 26 30 30 C 1.38237 * 120.00145 * 240.00206 * 25 23 4 31 31 C 1.48558 * 111.00165 * 115.42311 * 2 1 3 32 32 H 1.08994 * 109.47025 * 304.57891 * 1 2 3 33 33 H 1.08996 * 109.47071 * 64.58149 * 1 2 3 34 34 H 1.09004 * 109.47102 * 184.57466 * 1 2 3 35 35 H 1.08999 * 110.45463 * 40.33233 * 3 2 1 36 36 H 1.08999 * 110.50119 * 277.79565 * 3 2 1 37 37 H 0.96999 * 119.99822 * 0.02562 * 8 6 4 38 38 H 1.09005 * 109.47006 * 60.00588 * 9 8 6 39 39 H 1.08996 * 109.47529 * 300.00047 * 9 8 6 40 40 H 1.09005 * 114.32337 * 105.66457 * 12 10 9 41 41 H 1.09001 * 114.19922 * 332.91920 * 12 10 9 42 42 H 1.09000 * 113.47151 * 271.11754 * 13 12 10 43 43 H 1.09005 * 113.46726 * 140.68290 * 13 12 10 44 44 H 0.96995 * 120.00147 * 180.02562 * 18 17 15 45 45 H 1.08000 * 120.00629 * 359.97438 * 26 25 23 46 46 H 1.08001 * 119.99658 * 180.23412 * 27 26 25 47 47 H 1.08000 * 120.00526 * 179.72930 * 28 27 26 48 48 H 1.07996 * 120.00668 * 179.97438 * 29 28 27 49 49 H 1.08001 * 120.00015 * 0.02562 * 30 25 23 50 50 H 1.09003 * 110.40946 * 82.17982 * 31 2 1 51 51 H 1.08997 * 110.50985 * 319.78775 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3896 0.0000 4 6 3.4433 1.2501 0.5344 5 1 3.6955 2.0993 1.1696 6 6 4.4181 1.1461 -0.6101 7 8 5.0808 0.1403 -0.7528 8 7 4.5533 2.1706 -1.4753 9 6 5.5005 2.0692 -2.5883 10 6 5.4585 3.3575 -3.4127 11 1 4.4588 3.5925 -3.7777 12 6 6.5356 3.4185 -4.5010 13 6 6.6247 4.8926 -4.0828 14 7 6.1253 4.4934 -2.7585 15 6 6.2368 4.9673 -1.4785 16 1 5.7436 4.4526 -0.6672 17 6 6.9787 6.1128 -1.2248 18 7 7.5793 6.7403 -2.2136 19 14 7.1245 6.7636 0.5201 20 1 7.7527 5.7309 1.3826 21 1 7.9646 7.9882 0.5231 22 1 5.7727 7.0888 1.0417 23 6 3.4433 -0.0540 1.3584 24 1 4.1483 -0.7694 0.9350 25 6 3.7919 0.2350 2.7958 26 6 3.0016 1.0908 3.5400 27 6 3.3187 1.3521 4.8599 28 6 4.4320 0.7660 5.4324 29 6 5.2253 -0.0857 4.6867 30 6 4.9053 -0.3511 3.3683 31 6 2.0014 -0.5954 1.2526 32 1 -0.3633 0.5832 0.8461 33 1 -0.3633 0.4411 -0.9281 34 1 -0.3633 -1.0244 0.0820 35 1 1.4110 2.0239 0.6610 36 1 2.0089 1.7957 -1.0115 37 1 4.0235 2.9750 -1.3611 38 1 5.2285 1.2243 -3.2211 39 1 6.5068 1.9207 -2.1966 40 1 6.1610 3.2628 -5.5127 41 1 7.4295 2.8359 -4.2781 42 1 5.9388 5.5408 -4.6282 43 1 7.6443 5.2777 -4.0642 44 1 8.0980 7.5405 -2.0362 45 1 2.1345 1.5526 3.0914 46 1 2.6991 2.0178 5.4425 47 1 4.6823 0.9736 6.4623 48 1 6.0954 -0.5433 5.1337 49 1 5.5255 -1.0159 2.7854 50 1 2.0079 -1.6832 1.1836 51 1 1.4105 -0.2731 2.1099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038717954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:15 Heat of formation + Delta-G solvation = 54.600133 kcal Electronic energy + Delta-G solvation = -30613.891381 eV Core-core repulsion = 26707.868292 eV Total energy + Delta-G solvation = -3906.023089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64382 -39.09084 -38.29579 -37.57861 -34.06374 -33.36311 -32.23430 -31.02927 -30.80601 -28.65157 -28.01668 -27.32863 -25.85603 -23.47792 -23.27567 -22.79627 -21.93900 -21.58802 -20.48311 -19.62220 -19.09110 -17.48403 -17.00946 -16.49710 -15.91118 -15.73038 -15.34868 -15.19528 -14.97498 -14.84179 -14.33016 -14.27843 -13.91334 -13.73869 -13.45704 -13.28792 -13.20497 -13.02061 -12.83721 -12.57354 -12.20869 -11.96099 -11.73756 -11.67678 -11.53217 -11.41872 -11.32929 -11.10613 -10.97211 -10.86621 -10.77178 -10.74802 -10.58474 -9.99615 -9.84665 -9.56308 -9.17589 -9.01895 -8.82850 -8.81656 -8.63616 -8.50475 -6.90690 -5.77857 -3.10314 1.23539 1.31156 3.00817 3.36521 3.41713 3.42563 3.53296 3.66063 3.81128 4.40068 4.42310 4.56489 4.66534 4.81703 4.89800 4.96465 5.01251 5.10010 5.14735 5.19599 5.25122 5.29498 5.38360 5.39279 5.44848 5.47679 5.57984 5.60455 5.62054 5.66955 5.74955 5.81730 5.88518 5.92534 5.92739 6.11345 6.14471 6.34180 6.35194 6.41685 6.41989 6.57014 6.58911 6.60713 6.74084 6.76842 6.90598 6.95410 7.22004 7.39663 7.56621 7.95662 7.96634 8.62912 9.01745 9.69239 10.62398 11.39323 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009234 B = 0.003684 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.688665 B = 7597.942380 C = 9428.217239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.511 5.511 3 C 0.041 3.959 4 C -0.109 4.109 5 H 0.106 0.894 6 C 0.526 3.474 7 O -0.546 6.546 8 N -0.712 5.712 9 C 0.123 3.877 10 C 0.128 3.872 11 H 0.048 0.952 12 C -0.162 4.162 13 C 0.152 3.848 14 N -0.601 5.601 15 C -0.213 4.213 16 H 0.079 0.921 17 C -0.006 4.006 18 N -0.918 5.918 19 Si 0.906 3.094 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.286 1.286 23 C -0.045 4.045 24 H 0.115 0.885 25 C -0.072 4.072 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.125 4.125 29 C -0.118 4.118 30 C -0.108 4.108 31 C 0.042 3.958 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.401 0.599 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.025 0.975 43 H 0.071 0.929 44 H 0.254 0.746 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.125 0.875 50 H 0.085 0.915 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.781 -13.028 8.489 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.235 5.235 3 C -0.087 4.087 4 C -0.131 4.131 5 H 0.124 0.876 6 C 0.311 3.689 7 O -0.424 6.424 8 N -0.362 5.362 9 C -0.002 4.002 10 C 0.020 3.980 11 H 0.065 0.935 12 C -0.201 4.201 13 C 0.026 3.974 14 N -0.327 5.327 15 C -0.340 4.340 16 H 0.097 0.903 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.737 3.263 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.212 1.212 23 C -0.065 4.065 24 H 0.133 0.867 25 C -0.072 4.072 26 C -0.135 4.135 27 C -0.138 4.138 28 C -0.143 4.143 29 C -0.136 4.136 30 C -0.126 4.126 31 C -0.086 4.086 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.236 0.764 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.143 0.857 50 H 0.103 0.897 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.025 -13.790 8.149 20.029 hybrid contribution -0.531 1.555 1.774 2.418 sum -12.556 -12.235 9.924 20.145 Atomic orbital electron populations 1.22516 0.87814 1.02029 1.01153 1.65467 1.08170 1.14839 1.34983 1.23197 0.92963 0.90614 1.01903 1.22147 0.94879 0.99867 0.96174 0.87639 1.20068 0.82891 0.83085 0.82810 1.90620 1.47065 1.30614 1.74081 1.45901 1.42936 1.18406 1.28948 1.21788 0.93057 0.98106 0.87209 1.22353 0.95798 0.88065 0.91749 0.93502 1.23610 0.98927 1.01001 0.96534 1.22023 0.99837 0.90943 0.84576 1.45638 1.57190 1.27637 1.02259 1.18782 1.26851 1.06632 0.81781 0.90330 1.24753 1.00370 0.97861 0.97301 1.69809 1.36647 1.20410 1.29646 0.86291 0.77569 0.78341 0.84134 1.21097 1.21519 1.21243 1.20914 0.98047 0.96921 0.90572 0.86748 1.19802 0.95411 0.97051 0.94935 1.20975 0.99766 0.98455 0.94295 1.21105 0.97549 0.99909 0.95210 1.21140 0.95504 0.97741 0.99922 1.21164 0.99556 0.98499 0.94403 1.21153 0.96520 0.99808 0.95098 1.23242 0.93852 1.00543 0.90935 0.95339 0.91052 0.91201 0.92710 0.89241 0.76427 0.92317 0.91223 0.92357 0.90246 0.95768 0.91033 0.93639 0.86480 0.86224 0.86272 0.86067 0.85727 0.89704 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.53 60.07 0.57 0.69 16 2 N -0.51 -5.77 5.66 -238.00 -1.35 -7.12 16 3 C 0.04 0.47 6.04 -2.03 -0.01 0.46 16 4 C -0.11 -1.45 2.88 -90.39 -0.26 -1.71 16 5 H 0.11 1.40 7.36 -51.93 -0.38 1.02 16 6 C 0.53 8.89 7.09 -10.98 -0.08 8.81 16 7 O -0.55 -10.88 15.25 5.55 0.08 -10.80 16 8 N -0.71 -12.09 5.05 -60.29 -0.30 -12.39 16 9 C 0.12 2.25 5.51 -4.04 -0.02 2.22 16 10 C 0.13 2.46 4.10 -72.54 -0.30 2.16 16 11 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 12 C -0.16 -2.95 8.01 -26.36 -0.21 -3.16 16 13 C 0.15 3.47 7.40 -8.53 -0.06 3.40 16 14 N -0.60 -14.55 3.65 -177.20 -0.65 -15.20 16 15 C -0.21 -5.67 10.55 -15.06 -0.16 -5.83 16 16 H 0.08 2.00 7.50 -52.49 -0.39 1.61 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 18 N -0.92 -26.87 11.51 55.49 0.64 -26.23 16 19 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.05 -0.57 2.87 -90.39 -0.26 -0.83 16 24 H 0.11 1.69 6.24 -51.93 -0.32 1.37 16 25 C -0.07 -0.86 4.74 -104.62 -0.50 -1.36 16 26 C -0.12 -1.28 8.16 -39.58 -0.32 -1.61 16 27 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 28 C -0.13 -1.28 10.05 -39.59 -0.40 -1.68 16 29 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 30 C -0.11 -1.30 9.68 -39.58 -0.38 -1.68 16 31 C 0.04 0.45 5.94 -2.18 -0.01 0.44 16 32 H 0.03 0.22 7.98 -51.93 -0.41 -0.19 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.53 7.91 -51.93 -0.41 0.12 16 36 H 0.09 1.04 7.53 -51.93 -0.39 0.65 16 37 H 0.40 6.48 8.26 -40.82 -0.34 6.14 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.83 7.13 -51.93 -0.37 1.46 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.12 1.13 7.68 -52.49 -0.40 0.73 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 48 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 49 H 0.12 1.44 7.97 -52.49 -0.42 1.02 16 50 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.05 0.48 6.65 -51.93 -0.35 0.13 16 LS Contribution 408.08 15.07 6.15 6.15 Total: -1.00 -32.12 408.08 -12.14 -44.26 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -8.40 Total: 7.65 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.29 Total: -3.26 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -1.66 Total: -60.93 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.12 -12.14 -44.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038717954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.863 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds